EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSMAG00000006907 (Gene tree)
Gene ID: -
Gene Symbol: hfm1
Alias: si:ch211-83f14.5
Full Name: HFM1%2C ATP-dependent DNA helicase homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Minus strand
Length: 8111 bases
Position: chr7:13814997-13823107
Accession: ZDB-GENE-061207-43
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000011301	ResIII	PF04851.15	2.9e-12	1	1
ENSSMAP00000011301	DEAD	PF00270.29	4.5e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000011449	-	3060	-	ENSSMAP00000011301	1019 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000006907's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000006907's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSMAG00000006907	hfm1	77	32.278	ENSSMAG00000005463	snrnp200	72	32.278
ENSSMAG00000006907	hfm1	71	31.587	ENSSMAG00000012927	ascc3	62	31.633

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000006907	hfm1	87	64.916	ENSG00000162669	HFM1	62	64.916	Homo_sapiens
ENSSMAG00000006907	hfm1	81	85.560	ENSAPOG00000005304	hfm1	93	85.560	Acanthochromis_polyacanthus
ENSSMAG00000006907	hfm1	86	65.398	ENSAMEG00000000432	HFM1	62	65.398	Ailuropoda_melanoleuca
ENSSMAG00000006907	hfm1	88	84.169	ENSACIG00000021553	hfm1	81	84.169	Amphilophus_citrinellus
ENSSMAG00000006907	hfm1	85	84.041	ENSAOCG00000022839	hfm1	96	89.698	Amphiprion_ocellaris
ENSSMAG00000006907	hfm1	85	83.927	ENSAPEG00000014316	hfm1	96	90.302	Amphiprion_percula
ENSSMAG00000006907	hfm1	89	86.255	ENSATEG00000019181	hfm1	74	86.588	Anabas_testudineus
ENSSMAG00000006907	hfm1	87	66.293	ENSAPLG00000013639	HFM1	62	66.293	Anas_platyrhynchos
ENSSMAG00000006907	hfm1	87	64.819	ENSANAG00000029513	HFM1	62	64.819	Aotus_nancymaae
ENSSMAG00000006907	hfm1	88	81.514	ENSACLG00000009033	hfm1	96	82.289	Astatotilapia_calliptera
ENSSMAG00000006907	hfm1	87	72.797	ENSAMXG00000006108	hfm1	63	72.797	Astyanax_mexicanus
ENSSMAG00000006907	hfm1	87	65.140	ENSBTAG00000020856	HFM1	62	65.140	Bos_taurus
ENSSMAG00000006907	hfm1	87	64.358	ENSCJAG00000001843	HFM1	62	64.358	Callithrix_jacchus
ENSSMAG00000006907	hfm1	87	65.548	ENSCAFG00000020187	HFM1	62	65.548	Canis_familiaris
ENSSMAG00000006907	hfm1	87	65.111	ENSTSYG00000014250	HFM1	62	65.111	Carlito_syrichta
ENSSMAG00000006907	hfm1	86	64.653	ENSCPOG00000007421	HFM1	64	64.653	Cavia_porcellus
ENSSMAG00000006907	hfm1	87	64.022	ENSCCAG00000033206	HFM1	62	64.022	Cebus_capucinus
ENSSMAG00000006907	hfm1	87	64.693	ENSCATG00000030987	HFM1	62	64.693	Cercocebus_atys
ENSSMAG00000006907	hfm1	86	63.818	ENSCLAG00000005173	HFM1	60	63.818	Chinchilla_lanigera
ENSSMAG00000006907	hfm1	68	52.216	ENSCSAVG00000005094	-	100	52.216	Ciona_savignyi
ENSSMAG00000006907	hfm1	84	61.959	ENSCGRG00001016995	Hfm1	62	61.959	Cricetulus_griseus_chok1gshd
ENSSMAG00000006907	hfm1	87	64.246	ENSCGRG00000017181	Hfm1	62	64.246	Cricetulus_griseus_crigri
ENSSMAG00000006907	hfm1	88	80.151	ENSCSEG00000017659	hfm1	84	80.328	Cynoglossus_semilaevis
ENSSMAG00000006907	hfm1	70	81.818	ENSCVAG00000005075	hfm1	86	81.818	Cyprinodon_variegatus
ENSSMAG00000006907	hfm1	82	72.608	ENSDARG00000104288	hfm1	75	72.608	Danio_rerio
ENSSMAG00000006907	hfm1	86	64.422	ENSDNOG00000004776	HFM1	60	64.422	Dasypus_novemcinctus
ENSSMAG00000006907	hfm1	87	63.210	ENSDORG00000014661	Hfm1	62	63.210	Dipodomys_ordii
ENSSMAG00000006907	hfm1	85	65.207	ENSEASG00005015424	HFM1	84	65.207	Equus_asinus_asinus
ENSSMAG00000006907	hfm1	87	65.184	ENSECAG00000024039	HFM1	60	65.552	Equus_caballus
ENSSMAG00000006907	hfm1	89	76.356	ENSELUG00000018944	hfm1	97	77.228	Esox_lucius
ENSSMAG00000006907	hfm1	88	64.699	ENSFCAG00000029116	HFM1	62	65.513	Felis_catus
ENSSMAG00000006907	hfm1	87	66.704	ENSFALG00000001781	HFM1	62	66.704	Ficedula_albicollis
ENSSMAG00000006907	hfm1	87	64.693	ENSFDAG00000020816	HFM1	60	64.693	Fukomys_damarensis
ENSSMAG00000006907	hfm1	87	73.157	ENSGMOG00000017436	hfm1	93	73.157	Gadus_morhua
ENSSMAG00000006907	hfm1	86	80.363	ENSGAFG00000018093	hfm1	92	80.242	Gambusia_affinis
ENSSMAG00000006907	hfm1	87	80.111	ENSGACG00000015686	hfm1	93	80.111	Gasterosteus_aculeatus
ENSSMAG00000006907	hfm1	87	65.290	ENSGGOG00000038524	HFM1	62	64.804	Gorilla_gorilla
ENSSMAG00000006907	hfm1	88	82.962	ENSHBUG00000007309	hfm1	84	82.962	Haplochromis_burtoni
ENSSMAG00000006907	hfm1	80	79.365	ENSHCOG00000019632	hfm1	97	79.365	Hippocampus_comes
ENSSMAG00000006907	hfm1	87	73.051	ENSIPUG00000017020	hfm1	92	72.684	Ictalurus_punctatus
ENSSMAG00000006907	hfm1	87	63.240	ENSJJAG00000017198	Hfm1	64	63.240	Jaculus_jaculus
ENSSMAG00000006907	hfm1	86	80.692	ENSKMAG00000002282	hfm1	90	80.692	Kryptolebias_marmoratus
ENSSMAG00000006907	hfm1	87	81.706	ENSLBEG00000006759	hfm1	95	83.213	Labrus_bergylta
ENSSMAG00000006907	hfm1	86	67.699	ENSLACG00000010698	HFM1	85	67.699	Latimeria_chalumnae
ENSSMAG00000006907	hfm1	87	71.602	ENSLOCG00000004931	hfm1	83	71.602	Lepisosteus_oculatus
ENSSMAG00000006907	hfm1	69	67.751	ENSLAFG00000015903	-	90	70.074	Loxodonta_africana
ENSSMAG00000006907	hfm1	87	61.376	ENSMFAG00000003649	HFM1	62	61.376	Macaca_fascicularis
ENSSMAG00000006907	hfm1	87	64.693	ENSMMUG00000006819	HFM1	62	64.693	Macaca_mulatta
ENSSMAG00000006907	hfm1	90	81.937	ENSMAMG00000004623	hfm1	97	85.439	Mastacembelus_armatus
ENSSMAG00000006907	hfm1	88	81.514	ENSMZEG00005004679	hfm1	96	82.289	Maylandia_zebra
ENSSMAG00000006907	hfm1	76	67.097	ENSMGAG00000008437	HFM1	96	67.097	Meleagris_gallopavo
ENSSMAG00000006907	hfm1	87	64.206	ENSMAUG00000018858	Hfm1	62	64.206	Mesocricetus_auratus
ENSSMAG00000006907	hfm1	87	65.179	ENSMICG00000037935	HFM1	62	65.179	Microcebus_murinus
ENSSMAG00000006907	hfm1	87	64.318	ENSMOCG00000014812	Hfm1	62	64.318	Microtus_ochrogaster
ENSSMAG00000006907	hfm1	91	79.872	ENSMMOG00000006148	hfm1	99	79.766	Mola_mola
ENSSMAG00000006907	hfm1	81	89.952	ENSMALG00000002401	hfm1	94	86.418	Monopterus_albus
ENSSMAG00000006907	hfm1	79	72.034	MGP_CAROLIEiJ_G0027496	Hfm1	58	72.034	Mus_caroli
ENSSMAG00000006907	hfm1	87	63.799	ENSMUSG00000043410	Hfm1	62	63.799	Mus_musculus
ENSSMAG00000006907	hfm1	87	64.022	MGP_PahariEiJ_G0017268	Hfm1	62	64.022	Mus_pahari
ENSSMAG00000006907	hfm1	87	64.469	MGP_SPRETEiJ_G0028495	Hfm1	62	64.469	Mus_spretus
ENSSMAG00000006907	hfm1	87	65.067	ENSMPUG00000004594	HFM1	60	65.067	Mustela_putorius_furo
ENSSMAG00000006907	hfm1	87	65.513	ENSMLUG00000010200	HFM1	62	65.513	Myotis_lucifugus
ENSSMAG00000006907	hfm1	88	78.174	ENSNBRG00000002910	hfm1	97	82.729	Neolamprologus_brichardi
ENSSMAG00000006907	hfm1	87	63.111	ENSNLEG00000010285	HFM1	62	63.111	Nomascus_leucogenys
ENSSMAG00000006907	hfm1	79	58.557	ENSMEUG00000015788	HFM1	56	58.557	Notamacropus_eugenii
ENSSMAG00000006907	hfm1	82	61.356	ENSOPRG00000013916	HFM1	58	61.722	Ochotona_princeps
ENSSMAG00000006907	hfm1	89	80.670	ENSONIG00000010590	hfm1	85	83.055	Oreochromis_niloticus
ENSSMAG00000006907	hfm1	80	80.882	ENSORLG00000026844	hfm1	99	80.882	Oryzias_latipes
ENSSMAG00000006907	hfm1	94	66.122	ENSORLG00020002951	hfm1	70	70.503	Oryzias_latipes_hni
ENSSMAG00000006907	hfm1	94	74.438	ENSOMEG00000016474	hfm1	62	79.306	Oryzias_melastigma
ENSSMAG00000006907	hfm1	87	64.889	ENSOGAG00000032369	HFM1	73	64.889	Otolemur_garnettii
ENSSMAG00000006907	hfm1	87	65.140	ENSOARG00000015812	HFM1	62	65.140	Ovis_aries
ENSSMAG00000006907	hfm1	87	65.140	ENSPPAG00000024582	HFM1	67	65.140	Pan_paniscus
ENSSMAG00000006907	hfm1	88	64.661	ENSPPRG00000003270	HFM1	62	65.475	Panthera_pardus
ENSSMAG00000006907	hfm1	88	64.770	ENSPTIG00000018881	HFM1	62	65.587	Panthera_tigris_altaica
ENSSMAG00000006907	hfm1	87	65.028	ENSPTRG00000000948	HFM1	62	65.028	Pan_troglodytes
ENSSMAG00000006907	hfm1	87	64.581	ENSPANG00000009838	HFM1	62	64.581	Papio_anubis
ENSSMAG00000006907	hfm1	87	70.964	ENSPKIG00000003810	hfm1	95	71.481	Paramormyrops_kingsleyae
ENSSMAG00000006907	hfm1	81	77.711	ENSPMGG00000011059	hfm1	100	77.711	Periophthalmus_magnuspinnatus
ENSSMAG00000006907	hfm1	87	64.358	ENSPEMG00000022852	Hfm1	62	64.358	Peromyscus_maniculatus_bairdii
ENSSMAG00000006907	hfm1	87	64.922	ENSPCIG00000014233	HFM1	60	64.922	Phascolarctos_cinereus
ENSSMAG00000006907	hfm1	86	79.955	ENSPFOG00000017194	hfm1	85	79.955	Poecilia_formosa
ENSSMAG00000006907	hfm1	87	80.313	ENSPLAG00000000571	hfm1	81	80.313	Poecilia_latipinna
ENSSMAG00000006907	hfm1	87	80.291	ENSPMEG00000019475	hfm1	82	80.291	Poecilia_mexicana
ENSSMAG00000006907	hfm1	87	79.333	ENSPREG00000007803	hfm1	92	80.097	Poecilia_reticulata
ENSSMAG00000006907	hfm1	87	64.804	ENSPPYG00000001163	HFM1	62	64.804	Pongo_abelii
ENSSMAG00000006907	hfm1	87	58.491	ENSPVAG00000009713	HFM1	63	58.491	Pteropus_vampyrus
ENSSMAG00000006907	hfm1	88	81.403	ENSPNYG00000001795	hfm1	96	82.289	Pundamilia_nyererei
ENSSMAG00000006907	hfm1	90	70.120	ENSPNAG00000010865	hfm1	87	70.530	Pygocentrus_nattereri
ENSSMAG00000006907	hfm1	87	63.799	ENSRNOG00000023299	Hfm1	62	63.799	Rattus_norvegicus
ENSSMAG00000006907	hfm1	87	64.804	ENSRROG00000045569	HFM1	62	64.804	Rhinopithecus_roxellana
ENSSMAG00000006907	hfm1	87	64.358	ENSSBOG00000027456	HFM1	63	64.358	Saimiri_boliviensis_boliviensis
ENSSMAG00000006907	hfm1	59	67.921	ENSSHAG00000014616	-	69	67.921	Sarcophilus_harrisii
ENSSMAG00000006907	hfm1	87	72.568	ENSSFOG00015020129	hfm1	61	72.568	Scleropages_formosus
ENSSMAG00000006907	hfm1	85	85.189	ENSSDUG00000011424	hfm1	93	88.434	Seriola_dumerili
ENSSMAG00000006907	hfm1	81	88.327	ENSSLDG00000016386	hfm1	92	88.327	Seriola_lalandi_dorsalis
ENSSMAG00000006907	hfm1	81	86.007	ENSSPAG00000001023	hfm1	93	86.007	Stegastes_partitus
ENSSMAG00000006907	hfm1	87	65.475	ENSSSCG00000006912	HFM1	65	65.475	Sus_scrofa
ENSSMAG00000006907	hfm1	86	66.109	ENSTGUG00000006172	HFM1	93	66.109	Taeniopygia_guttata
ENSSMAG00000006907	hfm1	87	65.208	ENSTTRG00000013933	HFM1	63	65.208	Tursiops_truncatus
ENSSMAG00000006907	hfm1	87	62.458	ENSVPAG00000011331	HFM1	62	62.500	Vicugna_pacos
ENSSMAG00000006907	hfm1	85	65.398	ENSVVUG00000020760	HFM1	84	65.398	Vulpes_vulpes
ENSSMAG00000006907	hfm1	86	76.239	ENSXMAG00000004178	hfm1	91	80.704	Xiphophorus_maculatus