EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSMAG00000007549 (Gene tree)
Gene ID: -
Gene Symbol: sf1
Alias: wu:fc09f06|znf162
Full Name: splicing factor 1
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Minus strand
Length: 9942 bases
Position: chr1:5589912-5599853
Accession: ZDB-GENE-030131-2492
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000012261	KH_1	PF00013.29	3.7e-06	1	1
ENSSMAP00000012261	zf-CCHC	PF00098.23	0.00024	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000012418	-	3105	-	ENSSMAP00000012261	652 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000007549's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000007549's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000007549	sf1	75	88.957	ENSAPOG00000012341	sf1	84	89.501	Acanthochromis_polyacanthus
ENSSMAG00000007549	sf1	63	76.291	ENSAMEG00000017828	SF1	64	76.112	Ailuropoda_melanoleuca
ENSSMAG00000007549	sf1	70	84.934	ENSACIG00000016514	sf1	84	85.198	Amphilophus_citrinellus
ENSSMAG00000007549	sf1	75	89.571	ENSAOCG00000010934	sf1	84	90.017	Amphiprion_ocellaris
ENSSMAG00000007549	sf1	75	89.571	ENSAPEG00000009498	sf1	84	90.017	Amphiprion_percula
ENSSMAG00000007549	sf1	70	91.048	ENSATEG00000001894	sf1	84	89.501	Anabas_testudineus
ENSSMAG00000007549	sf1	75	63.584	ENSANAG00000022607	-	77	77.744	Aotus_nancymaae
ENSSMAG00000007549	sf1	63	76.581	ENSANAG00000026664	-	96	75.472	Aotus_nancymaae
ENSSMAG00000007549	sf1	70	87.364	ENSACLG00000007633	sf1	83	85.000	Astatotilapia_calliptera
ENSSMAG00000007549	sf1	71	83.731	ENSAMXG00000003630	sf1	75	82.788	Astyanax_mexicanus
ENSSMAG00000007549	sf1	63	76.526	ENSBTAG00000001035	SF1	68	76.112	Bos_taurus
ENSSMAG00000007549	sf1	52	47.753	WBGene00013808	sfa-1	51	46.809	Caenorhabditis_elegans
ENSSMAG00000007549	sf1	63	76.526	ENSCJAG00000002780	SF1	81	65.364	Callithrix_jacchus
ENSSMAG00000007549	sf1	63	76.291	ENSCAFG00000014239	SF1	64	76.112	Canis_familiaris
ENSSMAG00000007549	sf1	63	76.526	ENSCAFG00020014381	SF1	64	76.112	Canis_lupus_dingo
ENSSMAG00000007549	sf1	63	76.526	ENSCHIG00000025867	SF1	75	76.112	Capra_hircus
ENSSMAG00000007549	sf1	62	76.667	ENSCAPG00000010762	SF1	72	76.247	Cavia_aperea
ENSSMAG00000007549	sf1	63	76.291	ENSCPOG00000012290	SF1	75	76.247	Cavia_porcellus
ENSSMAG00000007549	sf1	63	76.471	ENSCCAG00000037881	SF1	96	75.708	Cebus_capucinus
ENSSMAG00000007549	sf1	63	69.524	ENSCCAG00000023781	-	83	70.757	Cebus_capucinus
ENSSMAG00000007549	sf1	63	76.526	ENSCATG00000011564	SF1	89	79.896	Cercocebus_atys
ENSSMAG00000007549	sf1	63	76.526	ENSCSAG00000007258	SF1	75	76.112	Chlorocebus_sabaeus
ENSSMAG00000007549	sf1	60	71.605	ENSCHOG00000006008	SF1	74	71.182	Choloepus_hoffmanni
ENSSMAG00000007549	sf1	65	79.954	ENSCPBG00000023763	SF1	73	65.225	Chrysemys_picta_bellii
ENSSMAG00000007549	sf1	63	55.904	ENSCING00000005564	-	87	56.849	Ciona_intestinalis
ENSSMAG00000007549	sf1	76	53.010	ENSCSAVG00000009055	-	64	65.683	Ciona_savignyi
ENSSMAG00000007549	sf1	63	76.526	ENSCANG00000042201	SF1	89	79.896	Colobus_angolensis_palliatus
ENSSMAG00000007549	sf1	63	76.761	ENSCGRG00001003677	Sf1	72	76.815	Cricetulus_griseus_chok1gshd
ENSSMAG00000007549	sf1	62	76.905	ENSCGRG00000001708	Sf1	76	76.112	Cricetulus_griseus_crigri
ENSSMAG00000007549	sf1	76	87.071	ENSCSEG00000014375	sf1	81	87.435	Cynoglossus_semilaevis
ENSSMAG00000007549	sf1	70	88.210	ENSCVAG00000001670	sf1	84	85.198	Cyprinodon_variegatus
ENSSMAG00000007549	sf1	74	78.395	ENSDARG00000008188	sf1	84	81.538	Danio_rerio
ENSSMAG00000007549	sf1	63	76.526	ENSDNOG00000001282	SF1	75	76.347	Dasypus_novemcinctus
ENSSMAG00000007549	sf1	63	76.526	ENSDORG00000016334	Sf1	64	76.112	Dipodomys_ordii
ENSSMAG00000007549	sf1	62	70.476	ENSETEG00000012830	SF1	57	70.803	Echinops_telfairi
ENSSMAG00000007549	sf1	86	49.918	ENSEBUG00000012728	sf1	59	57.336	Eptatretus_burgeri
ENSSMAG00000007549	sf1	63	76.761	ENSEASG00005018272	SF1	75	76.347	Equus_asinus_asinus
ENSSMAG00000007549	sf1	63	76.761	ENSECAG00000024544	SF1	75	76.347	Equus_caballus
ENSSMAG00000007549	sf1	56	76.053	ENSEEUG00000001058	SF1	93	76.440	Erinaceus_europaeus
ENSSMAG00000007549	sf1	76	83.133	ENSELUG00000013225	sf1	65	83.826	Esox_lucius
ENSSMAG00000007549	sf1	63	76.471	ENSFCAG00000012231	SF1	81	65.357	Felis_catus
ENSSMAG00000007549	sf1	65	74.371	ENSFDAG00000009833	SF1	72	76.247	Fukomys_damarensis
ENSSMAG00000007549	sf1	70	90.850	ENSFHEG00000022656	sf1	84	85.714	Fundulus_heteroclitus
ENSSMAG00000007549	sf1	75	78.049	ENSGMOG00000007469	sf1	71	78.271	Gadus_morhua
ENSSMAG00000007549	sf1	89	85.763	ENSGAFG00000019284	sf1	92	85.763	Gambusia_affinis
ENSSMAG00000007549	sf1	58	94.681	ENSGACG00000000826	sf1	81	87.298	Gasterosteus_aculeatus
ENSSMAG00000007549	sf1	65	79.724	ENSGAGG00000021691	SF1	73	69.663	Gopherus_agassizii
ENSSMAG00000007549	sf1	70	89.542	ENSHBUG00000011598	sf1	84	87.780	Haplochromis_burtoni
ENSSMAG00000007549	sf1	63	76.526	ENSHGLG00000009541	SF1	72	76.112	Heterocephalus_glaber_female
ENSSMAG00000007549	sf1	59	73.077	ENSHGLG00100008076	-	76	72.821	Heterocephalus_glaber_male
ENSSMAG00000007549	sf1	62	76.667	ENSHGLG00100013879	-	72	76.247	Heterocephalus_glaber_male
ENSSMAG00000007549	sf1	59	70.762	ENSHGLG00100008255	-	84	66.210	Heterocephalus_glaber_male
ENSSMAG00000007549	sf1	71	87.284	ENSHCOG00000011388	sf1	84	84.337	Hippocampus_comes
ENSSMAG00000007549	sf1	62	76.667	ENSSTOG00000009790	-	65	76.247	Ictidomys_tridecemlineatus
ENSSMAG00000007549	sf1	57	70.449	ENSSTOG00000024353	-	72	67.773	Ictidomys_tridecemlineatus
ENSSMAG00000007549	sf1	63	76.761	ENSJJAG00000011788	Sf1	64	76.347	Jaculus_jaculus
ENSSMAG00000007549	sf1	71	87.473	ENSKMAG00000005854	sf1	87	86.082	Kryptolebias_marmoratus
ENSSMAG00000007549	sf1	71	90.323	ENSLBEG00000019836	sf1	84	82.735	Labrus_bergylta
ENSSMAG00000007549	sf1	64	76.123	ENSLACG00000018493	SF1	75	75.887	Latimeria_chalumnae
ENSSMAG00000007549	sf1	71	78.981	ENSLOCG00000002130	sf1	91	79.258	Lepisosteus_oculatus
ENSSMAG00000007549	sf1	63	78.199	ENSLAFG00000007201	SF1	69	78.251	Loxodonta_africana
ENSSMAG00000007549	sf1	63	76.526	ENSMFAG00000033122	SF1	89	79.896	Macaca_fascicularis
ENSSMAG00000007549	sf1	63	76.526	ENSMMUG00000022606	SF1	99	76.415	Macaca_mulatta
ENSSMAG00000007549	sf1	63	76.526	ENSMNEG00000037901	SF1	89	79.896	Macaca_nemestrina
ENSSMAG00000007549	sf1	63	76.235	ENSMLEG00000040706	SF1	89	79.841	Mandrillus_leucophaeus
ENSSMAG00000007549	sf1	70	92.140	ENSMAMG00000001780	sf1	84	90.361	Mastacembelus_armatus
ENSSMAG00000007549	sf1	70	89.542	ENSMZEG00005009196	sf1	84	87.780	Maylandia_zebra
ENSSMAG00000007549	sf1	63	76.526	ENSMAUG00000014064	Sf1	72	76.815	Mesocricetus_auratus
ENSSMAG00000007549	sf1	63	76.526	ENSMICG00000001202	SF1	94	77.108	Microcebus_murinus
ENSSMAG00000007549	sf1	63	76.526	ENSMOCG00000022038	Sf1	72	76.347	Microtus_ochrogaster
ENSSMAG00000007549	sf1	70	87.555	ENSMMOG00000020474	sf1	84	86.403	Mola_mola
ENSSMAG00000007549	sf1	63	77.049	ENSMODG00000029407	SF1	89	76.581	Monodelphis_domestica
ENSSMAG00000007549	sf1	70	84.934	ENSMALG00000020521	sf1	92	84.828	Monopterus_albus
ENSSMAG00000007549	sf1	63	76.761	MGP_CAROLIEiJ_G0022607	Sf1	99	93.985	Mus_caroli
ENSSMAG00000007549	sf1	63	76.761	ENSMUSG00000024949	Sf1	99	93.985	Mus_musculus
ENSSMAG00000007549	sf1	63	76.761	MGP_PahariEiJ_G0014101	Sf1	99	93.985	Mus_pahari
ENSSMAG00000007549	sf1	63	76.761	MGP_SPRETEiJ_G0023518	Sf1	99	93.985	Mus_spretus
ENSSMAG00000007549	sf1	63	76.526	ENSMPUG00000012684	SF1	64	76.112	Mustela_putorius_furo
ENSSMAG00000007549	sf1	68	72.489	ENSMLUG00000029800	-	71	73.364	Myotis_lucifugus
ENSSMAG00000007549	sf1	64	75.926	ENSMLUG00000015217	-	65	76.212	Myotis_lucifugus
ENSSMAG00000007549	sf1	63	76.761	ENSNGAG00000005550	Sf1	72	76.347	Nannospalax_galili
ENSSMAG00000007549	sf1	70	87.364	ENSNBRG00000017606	sf1	83	84.854	Neolamprologus_brichardi
ENSSMAG00000007549	sf1	63	76.526	ENSNLEG00000005236	-	89	79.896	Nomascus_leucogenys
ENSSMAG00000007549	sf1	62	77.218	ENSMEUG00000013424	SF1	76	76.794	Notamacropus_eugenii
ENSSMAG00000007549	sf1	56	76.316	ENSOPRG00000005008	SF1	74	75.853	Ochotona_princeps
ENSSMAG00000007549	sf1	63	73.944	ENSODEG00000006102	-	79	68.797	Octodon_degus
ENSSMAG00000007549	sf1	70	89.325	ENSONIG00000015728	sf1	84	87.608	Oreochromis_niloticus
ENSSMAG00000007549	sf1	58	70.153	ENSOANG00000002909	SF1	84	72.145	Ornithorhynchus_anatinus
ENSSMAG00000007549	sf1	63	76.291	ENSOCUG00000026486	SF1	65	76.112	Oryctolagus_cuniculus
ENSSMAG00000007549	sf1	72	86.809	ENSORLG00000011853	sf1	84	81.419	Oryzias_latipes
ENSSMAG00000007549	sf1	72	86.809	ENSORLG00020011834	sf1	84	81.419	Oryzias_latipes_hni
ENSSMAG00000007549	sf1	71	87.013	ENSORLG00015012855	sf1	84	81.588	Oryzias_latipes_hsok
ENSSMAG00000007549	sf1	71	87.013	ENSOMEG00000005210	sf1	84	85.026	Oryzias_melastigma
ENSSMAG00000007549	sf1	63	76.291	ENSOGAG00000016196	SF1	64	76.112	Otolemur_garnettii
ENSSMAG00000007549	sf1	63	76.291	ENSOARG00000009166	SF1	72	76.112	Ovis_aries
ENSSMAG00000007549	sf1	63	77.176	ENSPPAG00000002799	-	97	75.708	Pan_paniscus
ENSSMAG00000007549	sf1	63	76.471	ENSPPRG00000013566	SF1	64	76.961	Panthera_pardus
ENSSMAG00000007549	sf1	63	76.291	ENSPTIG00000016141	SF1	74	76.347	Panthera_tigris_altaica
ENSSMAG00000007549	sf1	64	76.267	ENSPTRG00000003846	SF1	96	76.815	Pan_troglodytes
ENSSMAG00000007549	sf1	63	76.526	ENSPANG00000020754	SF1	89	79.896	Papio_anubis
ENSSMAG00000007549	sf1	52	79.480	ENSPKIG00000012116	sf1	88	76.667	Paramormyrops_kingsleyae
ENSSMAG00000007549	sf1	63	76.526	ENSPEMG00000010463	Sf1	72	76.815	Peromyscus_maniculatus_bairdii
ENSSMAG00000007549	sf1	65	62.028	ENSPMAG00000008272	sf1	65	56.504	Petromyzon_marinus
ENSSMAG00000007549	sf1	63	76.995	ENSPCIG00000018173	SF1	81	74.951	Phascolarctos_cinereus
ENSSMAG00000007549	sf1	70	89.130	ENSPFOG00000013683	sf1	84	85.763	Poecilia_formosa
ENSSMAG00000007549	sf1	82	85.102	ENSPLAG00000018076	sf1	79	85.102	Poecilia_latipinna
ENSSMAG00000007549	sf1	70	89.130	ENSPMEG00000005726	sf1	84	85.763	Poecilia_mexicana
ENSSMAG00000007549	sf1	70	88.478	ENSPREG00000004155	sf1	84	85.420	Poecilia_reticulata
ENSSMAG00000007549	sf1	63	76.526	ENSPPYG00000003098	-	78	76.112	Pongo_abelii
ENSSMAG00000007549	sf1	63	76.235	ENSPCAG00000013631	SF1	81	64.758	Procavia_capensis
ENSSMAG00000007549	sf1	63	76.526	ENSPCOG00000027546	SF1	94	77.108	Propithecus_coquereli
ENSSMAG00000007549	sf1	63	76.471	ENSPVAG00000016938	SF1	81	66.727	Pteropus_vampyrus
ENSSMAG00000007549	sf1	70	89.107	ENSPNYG00000004673	sf1	84	87.435	Pundamilia_nyererei
ENSSMAG00000007549	sf1	71	81.602	ENSPNAG00000013072	sf1	84	80.928	Pygocentrus_nattereri
ENSSMAG00000007549	sf1	63	76.526	ENSRNOG00000021085	Sf1	68	75.630	Rattus_norvegicus
ENSSMAG00000007549	sf1	63	76.291	ENSRBIG00000042818	SF1	89	79.896	Rhinopithecus_bieti
ENSSMAG00000007549	sf1	63	76.471	ENSRROG00000045655	SF1	94	75.529	Rhinopithecus_roxellana
ENSSMAG00000007549	sf1	52	38.655	YLR116W	MSL5	56	44.043	Saccharomyces_cerevisiae
ENSSMAG00000007549	sf1	62	67.788	ENSSBOG00000022267	-	95	67.263	Saimiri_boliviensis_boliviensis
ENSSMAG00000007549	sf1	75	69.368	ENSSHAG00000006841	SF1	74	79.268	Sarcophilus_harrisii
ENSSMAG00000007549	sf1	75	78.004	ENSSFOG00015021978	sf1	84	76.520	Scleropages_formosus
ENSSMAG00000007549	sf1	70	92.593	ENSSDUG00000003903	sf1	87	91.237	Seriola_dumerili
ENSSMAG00000007549	sf1	70	92.810	ENSSLDG00000013075	sf1	84	91.409	Seriola_lalandi_dorsalis
ENSSMAG00000007549	sf1	62	72.143	ENSSARG00000008180	SF1	78	71.971	Sorex_araneus
ENSSMAG00000007549	sf1	63	80.000	ENSSPUG00000012907	SF1	68	80.000	Sphenodon_punctatus
ENSSMAG00000007549	sf1	75	89.980	ENSSPAG00000019060	sf1	84	89.845	Stegastes_partitus
ENSSMAG00000007549	sf1	63	76.526	ENSSSCG00000013021	SF1	75	76.112	Sus_scrofa
ENSSMAG00000007549	sf1	76	69.043	ENSTNIG00000004820	sf1	78	73.903	Tetraodon_nigroviridis
ENSSMAG00000007549	sf1	62	71.776	ENSTBEG00000013133	SF1	68	63.065	Tupaia_belangeri
ENSSMAG00000007549	sf1	62	71.905	ENSTTRG00000008857	SF1	75	71.971	Tursiops_truncatus
ENSSMAG00000007549	sf1	70	71.336	ENSUMAG00000007268	SF1	79	76.112	Ursus_maritimus
ENSSMAG00000007549	sf1	63	76.526	ENSVVUG00000028585	SF1	75	76.112	Vulpes_vulpes
ENSSMAG00000007549	sf1	76	72.421	ENSXETG00000008434	sf1	68	77.804	Xenopus_tropicalis
ENSSMAG00000007549	sf1	56	92.603	ENSXCOG00000003704	sf1	93	85.657	Xiphophorus_couchianus
ENSSMAG00000007549	sf1	70	89.588	ENSXMAG00000007822	sf1	87	86.278	Xiphophorus_maculatus