EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSMAG00000007637 (Gene tree)
Gene ID: -
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Minus strand
Length: 16026 bases
Position: chr2:22133481-22149506
Accession: 17854
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000012789	Upf2	PF04050.14	3.9e-33	1	1
ENSSMAP00000012513	Upf2	PF04050.14	4.3e-33	1	1
ENSSMAP00000012570	Upf2	PF04050.14	4.3e-33	1	1
ENSSMAP00000012628	Upf2	PF04050.14	4.3e-33	1	1
ENSSMAP00000012682	Upf2	PF04050.14	4.3e-33	1	1
ENSSMAP00000012737	Upf2	PF04050.14	4.3e-33	1	1
ENSSMAP00000012570	MIF4G	PF02854.19	3.3e-69	1	3
ENSSMAP00000012570	MIF4G	PF02854.19	3.3e-69	2	3
ENSSMAP00000012570	MIF4G	PF02854.19	3.3e-69	3	3
ENSSMAP00000012737	MIF4G	PF02854.19	3.3e-69	1	3
ENSSMAP00000012737	MIF4G	PF02854.19	3.3e-69	2	3
ENSSMAP00000012737	MIF4G	PF02854.19	3.3e-69	3	3
ENSSMAP00000012513	MIF4G	PF02854.19	3.3e-69	1	3
ENSSMAP00000012513	MIF4G	PF02854.19	3.3e-69	2	3
ENSSMAP00000012513	MIF4G	PF02854.19	3.3e-69	3	3
ENSSMAP00000012628	MIF4G	PF02854.19	3.3e-69	1	3
ENSSMAP00000012628	MIF4G	PF02854.19	3.3e-69	2	3
ENSSMAP00000012628	MIF4G	PF02854.19	3.3e-69	3	3
ENSSMAP00000012682	MIF4G	PF02854.19	3.3e-69	1	3
ENSSMAP00000012682	MIF4G	PF02854.19	3.3e-69	2	3
ENSSMAP00000012682	MIF4G	PF02854.19	3.3e-69	3	3
ENSSMAP00000012789	MIF4G	PF02854.19	4.6e-67	1	3
ENSSMAP00000012789	MIF4G	PF02854.19	4.6e-67	2	3
ENSSMAP00000012789	MIF4G	PF02854.19	4.6e-67	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000012675	UPF2-201	6990	-	ENSSMAP00000012513	1346 (aa)	-	-
ENSSMAT00000012957	UPF2-206	3843	-	ENSSMAP00000012789	1280 (aa)	-	-
ENSSMAT00000012791	UPF2-203	6990	-	ENSSMAP00000012628	1346 (aa)	-	-
ENSSMAT00000012733	UPF2-202	6990	-	ENSSMAP00000012570	1346 (aa)	-	-
ENSSMAT00000012903	UPF2-205	6990	-	ENSSMAP00000012737	1346 (aa)	-	-
ENSSMAT00000012847	UPF2-204	6990	-	ENSSMAP00000012682	1346 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000007637's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000007637's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000007637	UPF2	100	80.078	ENSG00000151461	UPF2	90	83.001	Homo_sapiens
ENSSMAG00000007637	UPF2	100	88.125	ENSAPOG00000015837	UPF2	89	93.606	Acanthochromis_polyacanthus
ENSSMAG00000007637	UPF2	100	79.380	ENSAMEG00000004586	UPF2	90	83.088	Ailuropoda_melanoleuca
ENSSMAG00000007637	UPF2	100	92.003	ENSACIG00000018078	UPF2	90	92.114	Amphilophus_citrinellus
ENSSMAG00000007637	UPF2	100	93.002	ENSAOCG00000016766	UPF2	90	93.229	Amphiprion_ocellaris
ENSSMAG00000007637	UPF2	100	93.079	ENSAPEG00000019084	UPF2	90	93.229	Amphiprion_percula
ENSSMAG00000007637	UPF2	100	91.848	ENSATEG00000021677	UPF2	89	92.288	Anabas_testudineus
ENSSMAG00000007637	UPF2	100	77.227	ENSAPLG00000010287	UPF2	90	81.558	Anas_platyrhynchos
ENSSMAG00000007637	UPF2	100	80.605	ENSACAG00000009259	UPF2	90	82.771	Anolis_carolinensis
ENSSMAG00000007637	UPF2	91	77.048	ENSANAG00000028451	UPF2	91	77.170	Aotus_nancymaae
ENSSMAG00000007637	UPF2	100	91.693	ENSACLG00000012696	UPF2	90	92.028	Astatotilapia_calliptera
ENSSMAG00000007637	UPF2	100	86.466	ENSAMXG00000013700	UPF2	89	89.168	Astyanax_mexicanus
ENSSMAG00000007637	UPF2	100	79.286	ENSBTAG00000000288	UPF2	90	83.001	Bos_taurus
ENSSMAG00000007637	UPF2	100	79.907	ENSCJAG00000020685	UPF2	90	82.914	Callithrix_jacchus
ENSSMAG00000007637	UPF2	100	79.380	ENSCAFG00000004839	UPF2	90	83.088	Canis_familiaris
ENSSMAG00000007637	UPF2	95	85.572	ENSCAFG00020005882	UPF2	90	80.833	Canis_lupus_dingo
ENSSMAG00000007637	UPF2	100	79.286	ENSCHIG00000020359	UPF2	90	83.001	Capra_hircus
ENSSMAG00000007637	UPF2	100	80.140	ENSTSYG00000000935	UPF2	90	82.914	Carlito_syrichta
ENSSMAG00000007637	UPF2	91	72.464	ENSCAPG00000016658	UPF2	93	71.639	Cavia_aperea
ENSSMAG00000007637	UPF2	98	78.192	ENSCPOG00000008809	UPF2	90	80.399	Cavia_porcellus
ENSSMAG00000007637	UPF2	100	75.214	ENSCCAG00000035991	UPF2	90	83.752	Cebus_capucinus
ENSSMAG00000007637	UPF2	100	80.155	ENSCATG00000032679	UPF2	90	83.001	Cercocebus_atys
ENSSMAG00000007637	UPF2	100	79.147	ENSCLAG00000011434	UPF2	90	82.567	Chinchilla_lanigera
ENSSMAG00000007637	UPF2	100	80.155	ENSCSAG00000013372	UPF2	90	83.001	Chlorocebus_sabaeus
ENSSMAG00000007637	UPF2	78	85.463	ENSCHOG00000000422	UPF2	77	87.617	Choloepus_hoffmanni
ENSSMAG00000007637	UPF2	94	85.714	ENSCPBG00000027823	UPF2	91	83.203	Chrysemys_picta_bellii
ENSSMAG00000007637	UPF2	78	48.123	ENSCSAVG00000007772	-	99	46.744	Ciona_savignyi
ENSSMAG00000007637	UPF2	100	75.154	ENSCANG00000040396	UPF2	90	77.643	Colobus_angolensis_palliatus
ENSSMAG00000007637	UPF2	100	78.915	ENSCGRG00001019347	Upf2	90	82.812	Cricetulus_griseus_chok1gshd
ENSSMAG00000007637	UPF2	100	78.915	ENSCGRG00000017993	Upf2	90	82.812	Cricetulus_griseus_crigri
ENSSMAG00000007637	UPF2	99	83.891	ENSCSEG00000003520	UPF2	90	83.507	Cynoglossus_semilaevis
ENSSMAG00000007637	UPF2	99	90.368	ENSCVAG00000006167	UPF2	93	93.002	Cyprinodon_variegatus
ENSSMAG00000007637	UPF2	100	79.070	ENSDNOG00000018160	UPF2	90	82.914	Dasypus_novemcinctus
ENSSMAG00000007637	UPF2	100	78.837	ENSDORG00000002478	Upf2	90	82.480	Dipodomys_ordii
ENSSMAG00000007637	UPF2	89	36.120	FBgn0029992	Upf2	72	37.251	Drosophila_melanogaster
ENSSMAG00000007637	UPF2	73	91.971	ENSETEG00000011583	-	62	91.667	Echinops_telfairi
ENSSMAG00000007637	UPF2	65	72.078	ENSEBUG00000012448	-	92	67.319	Eptatretus_burgeri
ENSSMAG00000007637	UPF2	100	79.690	ENSEASG00005019274	UPF2	90	83.001	Equus_asinus_asinus
ENSSMAG00000007637	UPF2	100	79.690	ENSECAG00000017022	UPF2	90	83.001	Equus_caballus
ENSSMAG00000007637	UPF2	82	74.295	ENSEEUG00000007819	UPF2	67	86.777	Erinaceus_europaeus
ENSSMAG00000007637	UPF2	100	87.839	ENSELUG00000012014	UPF2	90	90.147	Esox_lucius
ENSSMAG00000007637	UPF2	100	84.239	ENSFCAG00000005785	UPF2	90	82.827	Felis_catus
ENSSMAG00000007637	UPF2	90	84.695	ENSFALG00000001889	UPF2	88	83.896	Ficedula_albicollis
ENSSMAG00000007637	UPF2	100	78.682	ENSFDAG00000014348	UPF2	90	82.307	Fukomys_damarensis
ENSSMAG00000007637	UPF2	99	89.969	ENSFHEG00000009826	UPF2	91	91.493	Fundulus_heteroclitus
ENSSMAG00000007637	UPF2	90	88.286	ENSGMOG00000005557	UPF2	90	88.465	Gadus_morhua
ENSSMAG00000007637	UPF2	100	82.016	ENSGALG00000033772	UPF2	90	83.824	Gallus_gallus
ENSSMAG00000007637	UPF2	100	90.591	ENSGAFG00000020867	UPF2	90	91.319	Gambusia_affinis
ENSSMAG00000007637	UPF2	100	91.783	ENSGACG00000001080	UPF2	90	91.609	Gasterosteus_aculeatus
ENSSMAG00000007637	UPF2	100	79.225	ENSGAGG00000002700	UPF2	90	82.944	Gopherus_agassizii
ENSSMAG00000007637	UPF2	100	80.078	ENSGGOG00000001479	UPF2	90	83.001	Gorilla_gorilla
ENSSMAG00000007637	UPF2	100	91.770	ENSHBUG00000004249	UPF2	90	92.028	Haplochromis_burtoni
ENSSMAG00000007637	UPF2	100	78.915	ENSHGLG00000015176	-	90	82.394	Heterocephalus_glaber_female
ENSSMAG00000007637	UPF2	100	70.388	ENSHGLG00000003822	-	89	73.374	Heterocephalus_glaber_female
ENSSMAG00000007637	UPF2	100	76.744	ENSHGLG00100010036	UPF2	89	82.206	Heterocephalus_glaber_male
ENSSMAG00000007637	UPF2	100	88.112	ENSHCOG00000004025	UPF2	89	89.670	Hippocampus_comes
ENSSMAG00000007637	UPF2	100	84.317	ENSIPUG00000015524	UPF2	90	88.215	Ictalurus_punctatus
ENSSMAG00000007637	UPF2	100	78.837	ENSSTOG00000013075	UPF2	90	82.654	Ictidomys_tridecemlineatus
ENSSMAG00000007637	UPF2	100	78.173	ENSJJAG00000004913	Upf2	90	82.134	Jaculus_jaculus
ENSSMAG00000007637	UPF2	99	90.767	ENSKMAG00000001071	UPF2	91	91.248	Kryptolebias_marmoratus
ENSSMAG00000007637	UPF2	80	89.320	ENSLBEG00000000728	-	82	88.839	Labrus_bergylta
ENSSMAG00000007637	UPF2	100	92.081	ENSLBEG00000016394	-	89	92.028	Labrus_bergylta
ENSSMAG00000007637	UPF2	99	74.690	ENSLACG00000015945	UPF2	90	75.948	Latimeria_chalumnae
ENSSMAG00000007637	UPF2	99	84.448	ENSLOCG00000015698	UPF2	91	88.725	Lepisosteus_oculatus
ENSSMAG00000007637	UPF2	100	80.155	ENSMFAG00000043865	UPF2	90	83.001	Macaca_fascicularis
ENSSMAG00000007637	UPF2	100	80.155	ENSMMUG00000008241	UPF2	90	83.001	Macaca_mulatta
ENSSMAG00000007637	UPF2	80	80.426	ENSMNEG00000008062	UPF2	87	84.022	Macaca_nemestrina
ENSSMAG00000007637	UPF2	100	77.829	ENSMLEG00000036120	UPF2	89	83.033	Mandrillus_leucophaeus
ENSSMAG00000007637	UPF2	100	91.867	ENSMAMG00000018276	UPF2	90	92.201	Mastacembelus_armatus
ENSSMAG00000007637	UPF2	100	91.693	ENSMZEG00005021595	UPF2	90	92.028	Maylandia_zebra
ENSSMAG00000007637	UPF2	99	80.031	ENSMGAG00000004573	UPF2	90	83.927	Meleagris_gallopavo
ENSSMAG00000007637	UPF2	100	76.899	ENSMAUG00000016512	Upf2	90	80.469	Mesocricetus_auratus
ENSSMAG00000007637	UPF2	95	85.075	ENSMICG00000001716	UPF2	90	79.965	Microcebus_murinus
ENSSMAG00000007637	UPF2	100	79.225	ENSMOCG00000008263	Upf2	90	83.073	Microtus_ochrogaster
ENSSMAG00000007637	UPF2	100	85.459	ENSMMOG00000006528	UPF2	90	86.632	Mola_mola
ENSSMAG00000007637	UPF2	100	79.364	ENSMODG00000016794	UPF2	90	83.117	Monodelphis_domestica
ENSSMAG00000007637	UPF2	100	89.837	ENSMALG00000002663	UPF2	90	89.931	Monopterus_albus
ENSSMAG00000007637	UPF2	100	80.000	MGP_CAROLIEiJ_G0023157	Upf2	100	83.490	Mus_caroli
ENSSMAG00000007637	UPF2	100	80.310	ENSMUSG00000043241	Upf2	99	84.053	Mus_musculus
ENSSMAG00000007637	UPF2	100	79.147	MGP_PahariEiJ_G0019217	Upf2	100	84.053	Mus_pahari
ENSSMAG00000007637	UPF2	100	80.543	MGP_SPRETEiJ_G0024075	Upf2	100	84.053	Mus_spretus
ENSSMAG00000007637	UPF2	100	79.380	ENSMPUG00000001064	UPF2	90	83.088	Mustela_putorius_furo
ENSSMAG00000007637	UPF2	100	78.748	ENSMLUG00000000228	UPF2	90	82.368	Myotis_lucifugus
ENSSMAG00000007637	UPF2	100	91.770	ENSNBRG00000013629	UPF2	90	92.028	Neolamprologus_brichardi
ENSSMAG00000007637	UPF2	100	80.078	ENSNLEG00000012058	UPF2	90	82.914	Nomascus_leucogenys
ENSSMAG00000007637	UPF2	72	92.958	ENSOPRG00000006801	-	73	92.958	Ochotona_princeps
ENSSMAG00000007637	UPF2	100	79.054	ENSODEG00000001290	UPF2	90	82.480	Octodon_degus
ENSSMAG00000007637	UPF2	100	91.537	ENSONIG00000017991	UPF2	90	91.941	Oreochromis_niloticus
ENSSMAG00000007637	UPF2	100	78.837	ENSOCUG00000006230	UPF2	90	83.435	Oryctolagus_cuniculus
ENSSMAG00000007637	UPF2	100	89.899	ENSORLG00000017189	UPF2	90	91.847	Oryzias_latipes
ENSSMAG00000007637	UPF2	100	89.821	ENSORLG00020005969	UPF2	90	91.761	Oryzias_latipes_hni
ENSSMAG00000007637	UPF2	100	89.821	ENSORLG00015005713	UPF2	90	91.674	Oryzias_latipes_hsok
ENSSMAG00000007637	UPF2	100	86.392	ENSOMEG00000023420	UPF2	88	87.326	Oryzias_melastigma
ENSSMAG00000007637	UPF2	100	80.543	ENSOGAG00000005796	UPF2	90	83.088	Otolemur_garnettii
ENSSMAG00000007637	UPF2	100	79.163	ENSOARG00000014587	UPF2	90	82.857	Ovis_aries
ENSSMAG00000007637	UPF2	100	77.367	ENSPPAG00000037953	UPF2	90	79.532	Pan_paniscus
ENSSMAG00000007637	UPF2	91	83.248	ENSPPRG00000000690	UPF2	90	82.827	Panthera_pardus
ENSSMAG00000007637	UPF2	91	83.248	ENSPTIG00000008867	UPF2	90	82.827	Panthera_tigris_altaica
ENSSMAG00000007637	UPF2	100	80.078	ENSPTRG00000002291	UPF2	90	83.001	Pan_troglodytes
ENSSMAG00000007637	UPF2	100	80.155	ENSPANG00000023399	UPF2	90	83.001	Papio_anubis
ENSSMAG00000007637	UPF2	100	85.803	ENSPKIG00000025502	UPF2	90	87.771	Paramormyrops_kingsleyae
ENSSMAG00000007637	UPF2	59	76.340	ENSPSIG00000015158	UPF2	79	82.726	Pelodiscus_sinensis
ENSSMAG00000007637	UPF2	100	86.392	ENSPMGG00000005259	UPF2	90	88.619	Periophthalmus_magnuspinnatus
ENSSMAG00000007637	UPF2	87	81.061	ENSPEMG00000015731	Upf2	88	84.259	Peromyscus_maniculatus_bairdii
ENSSMAG00000007637	UPF2	90	83.577	ENSPCIG00000006656	UPF2	90	83.030	Phascolarctos_cinereus
ENSSMAG00000007637	UPF2	100	90.358	ENSPFOG00000017118	UPF2	90	91.667	Poecilia_formosa
ENSSMAG00000007637	UPF2	100	90.358	ENSPLAG00000005094	UPF2	90	91.580	Poecilia_latipinna
ENSSMAG00000007637	UPF2	100	90.280	ENSPMEG00000017009	UPF2	90	91.493	Poecilia_mexicana
ENSSMAG00000007637	UPF2	100	89.269	ENSPREG00000021880	UPF2	90	90.365	Poecilia_reticulata
ENSSMAG00000007637	UPF2	65	82.367	ENSPPYG00000002089	-	99	82.012	Pongo_abelii
ENSSMAG00000007637	UPF2	95	80.041	ENSPCAG00000000684	UPF2	80	80.204	Procavia_capensis
ENSSMAG00000007637	UPF2	100	77.674	ENSPCOG00000021656	UPF2	90	79.879	Propithecus_coquereli
ENSSMAG00000007637	UPF2	93	84.783	ENSPVAG00000017286	UPF2	87	84.964	Pteropus_vampyrus
ENSSMAG00000007637	UPF2	100	89.286	ENSPNYG00000017096	UPF2	90	89.341	Pundamilia_nyererei
ENSSMAG00000007637	UPF2	100	87.345	ENSPNAG00000009357	UPF2	90	89.428	Pygocentrus_nattereri
ENSSMAG00000007637	UPF2	100	75.270	ENSRNOG00000023593	Upf2	100	95.556	Rattus_norvegicus
ENSSMAG00000007637	UPF2	100	79.131	ENSRBIG00000037780	UPF2	90	81.960	Rhinopithecus_bieti
ENSSMAG00000007637	UPF2	100	79.922	ENSRROG00000043547	UPF2	90	82.914	Rhinopithecus_roxellana
ENSSMAG00000007637	UPF2	100	79.829	ENSSBOG00000020012	UPF2	90	82.827	Saimiri_boliviensis_boliviensis
ENSSMAG00000007637	UPF2	100	84.198	ENSSFOG00015023788	upf2	90	88.581	Scleropages_formosus
ENSSMAG00000007637	UPF2	100	92.785	ENSSDUG00000017244	UPF2	89	93.576	Seriola_dumerili
ENSSMAG00000007637	UPF2	100	89.449	ENSSLDG00000016866	UPF2	90	88.976	Seriola_lalandi_dorsalis
ENSSMAG00000007637	UPF2	100	78.251	ENSSARG00000008615	UPF2	90	82.047	Sorex_araneus
ENSSMAG00000007637	UPF2	100	78.176	ENSSPUG00000014544	UPF2	88	83.784	Sphenodon_punctatus
ENSSMAG00000007637	UPF2	68	82.554	ENSSSCG00000011117	-	99	82.098	Sus_scrofa
ENSSMAG00000007637	UPF2	90	84.682	ENSTGUG00000002163	-	90	83.969	Taeniopygia_guttata
ENSSMAG00000007637	UPF2	100	89.907	ENSTRUG00000007519	UPF2	89	90.641	Takifugu_rubripes
ENSSMAG00000007637	UPF2	100	85.891	ENSTNIG00000004453	UPF2	97	86.805	Tetraodon_nigroviridis
ENSSMAG00000007637	UPF2	93	72.273	ENSTBEG00000012679	UPF2	83	74.718	Tupaia_belangeri
ENSSMAG00000007637	UPF2	100	79.519	ENSTTRG00000016388	UPF2	90	83.001	Tursiops_truncatus
ENSSMAG00000007637	UPF2	87	95.506	ENSUAMG00000023560	UPF2	88	95.506	Ursus_americanus
ENSSMAG00000007637	UPF2	100	79.302	ENSUMAG00000012953	UPF2	85	83.001	Ursus_maritimus
ENSSMAG00000007637	UPF2	82	96.774	ENSVPAG00000006763	UPF2	76	96.774	Vicugna_pacos
ENSSMAG00000007637	UPF2	91	83.248	ENSVVUG00000006166	UPF2	90	83.088	Vulpes_vulpes
ENSSMAG00000007637	UPF2	100	76.012	ENSXETG00000033103	UPF2	99	75.115	Xenopus_tropicalis
ENSSMAG00000007637	UPF2	100	90.303	ENSXCOG00000011604	UPF2	90	91.667	Xiphophorus_couchianus
ENSSMAG00000007637	UPF2	100	90.747	ENSXMAG00000017209	UPF2	90	91.753	Xiphophorus_maculatus