EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSSMAG00000007895 (Gene tree)
Gene ID
-
Gene Symbol
lsm5
Alias
zgc:171959
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Scophthalmus_maximus
Status
putative
Strand
Minus strand
Length
1936 bases
Position
chr21:14168639-14170574
Accession
ZDB-GENE-070822-23
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSMAP00000012812LSMPF01423.223.4e-0611
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSMAT00000012982-180-ENSSMAP0000001281259 (aa)--
Gene Model
Click here to download ENSSMAG00000007895's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000007895's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSMAG00000007895lsm57693.333ENSG00000106355LSM57393.333Homo_sapiens
ENSSMAG00000007895lsm57695.556ENSAPOG00000011743LSM57395.556Acanthochromis_polyacanthus
ENSSMAG00000007895lsm510062.637ENSAPOG00000020779LSM510062.637Acanthochromis_polyacanthus
ENSSMAG00000007895lsm510060.440ENSAMEG00000006700LSM510060.440Ailuropoda_melanoleuca
ENSSMAG00000007895lsm59298.148ENSACIG00000019185lsm59698.148Amphilophus_citrinellus
ENSSMAG00000007895lsm510062.637ENSAOCG00000001636lsm510062.637Amphiprion_ocellaris
ENSSMAG00000007895lsm57695.556ENSAPEG00000008201lsm57395.556Amphiprion_percula
ENSSMAG00000007895lsm510062.637ENSAPEG00000008151lsm510062.637Amphiprion_percula
ENSSMAG00000007895lsm510098.305ENSATEG00000020470lsm510098.305Anabas_testudineus
ENSSMAG00000007895lsm57393.023ENSAPLG00000008171LSM55893.023Anas_platyrhynchos
ENSSMAG00000007895lsm510059.341ENSANAG00000034409-10059.341Aotus_nancymaae
ENSSMAG00000007895lsm59855.556ENSANAG00000024192-9455.556Aotus_nancymaae
ENSSMAG00000007895lsm510060.759ENSANAG00000037758-10060.759Aotus_nancymaae
ENSSMAG00000007895lsm59260.465ENSACLG00000012891lsm59860.465Astatotilapia_calliptera
ENSSMAG00000007895lsm510059.574ENSAMXG00000035543lsm510059.574Astyanax_mexicanus
ENSSMAG00000007895lsm510060.440ENSBTAG00000002332LSM510060.440Bos_taurus
ENSSMAG00000007895lsm510045.055WBGene00003079lsm-510045.055Caenorhabditis_elegans
ENSSMAG00000007895lsm510060.440ENSCJAG00000047379LSM55760.440Callithrix_jacchus
ENSSMAG00000007895lsm59855.556ENSCJAG00000005678-10055.556Callithrix_jacchus
ENSSMAG00000007895lsm510059.341ENSCAFG00000019261-10059.341Canis_familiaris
ENSSMAG00000007895lsm510060.440ENSCAFG00020004946LSM510060.440Canis_lupus_dingo
ENSSMAG00000007895lsm510058.242ENSCHIG00000004079-10058.242Capra_hircus
ENSSMAG00000007895lsm510060.440ENSCHIG00000024539LSM510060.440Capra_hircus
ENSSMAG00000007895lsm57145.946ENSCHIG00000021428-9547.727Capra_hircus
ENSSMAG00000007895lsm510060.440ENSTSYG00000006449-10060.440Carlito_syrichta
ENSSMAG00000007895lsm510059.524ENSTSYG00000026530-9159.524Carlito_syrichta
ENSSMAG00000007895lsm510061.176ENSTSYG00000028728-10061.176Carlito_syrichta
ENSSMAG00000007895lsm510044.595ENSTSYG00000036637-10044.595Carlito_syrichta
ENSSMAG00000007895lsm57682.222ENSCAPG00000006980LSM56082.222Cavia_aperea
ENSSMAG00000007895lsm510094.915ENSCPOG00000036386LSM510094.915Cavia_porcellus
ENSSMAG00000007895lsm510060.440ENSCCAG00000037808-10060.440Cebus_capucinus
ENSSMAG00000007895lsm510063.291ENSCCAG00000032792-10063.291Cebus_capucinus
ENSSMAG00000007895lsm510060.440ENSCCAG00000000821-10060.440Cebus_capucinus
ENSSMAG00000007895lsm510058.442ENSCCAG00000037334-10058.442Cebus_capucinus
ENSSMAG00000007895lsm510058.242ENSCCAG00000032123-10058.242Cebus_capucinus
ENSSMAG00000007895lsm57693.333ENSCATG00000040218LSM57393.333Cercocebus_atys
ENSSMAG00000007895lsm59850.000ENSCATG00000014790-10050.000Cercocebus_atys
ENSSMAG00000007895lsm510052.222ENSCLAG00000005062-9052.222Chinchilla_lanigera
ENSSMAG00000007895lsm510094.915ENSCLAG00000000202LSM510094.915Chinchilla_lanigera
ENSSMAG00000007895lsm57353.333ENSCHOG00000005335LSM59953.333Choloepus_hoffmanni
ENSSMAG00000007895lsm510060.440ENSCPBG00000013685LSM510060.440Chrysemys_picta_bellii
ENSSMAG00000007895lsm57682.222ENSCING00000020625-5182.222Ciona_intestinalis
ENSSMAG00000007895lsm57682.222ENSCSAVG00000001439-5182.222Ciona_savignyi
ENSSMAG00000007895lsm57693.333ENSCANG00000039909LSM57393.333Colobus_angolensis_palliatus
ENSSMAG00000007895lsm510094.915ENSCGRG00001015461Lsm510094.915Cricetulus_griseus_chok1gshd
ENSSMAG00000007895lsm57693.333ENSCGRG00000007677Lsm56093.333Cricetulus_griseus_crigri
ENSSMAG00000007895lsm510096.610ENSCSEG00000015286lsm510096.610Cynoglossus_semilaevis
ENSSMAG00000007895lsm57695.556ENSCVAG00000004262lsm510062.637Cyprinodon_variegatus
ENSSMAG00000007895lsm57695.556ENSDARG00000071573lsm57395.556Danio_rerio
ENSSMAG00000007895lsm59354.023ENSDNOG00000049495-9654.023Dasypus_novemcinctus
ENSSMAG00000007895lsm510060.440ENSDNOG00000034958LSM510060.440Dasypus_novemcinctus
ENSSMAG00000007895lsm510094.915ENSDORG00000009422Lsm510094.915Dipodomys_ordii
ENSSMAG00000007895lsm510060.440ENSETEG00000018068LSM510060.440Echinops_telfairi
ENSSMAG00000007895lsm55891.176ENSETEG00000016074-5291.176Echinops_telfairi
ENSSMAG00000007895lsm59752.500ENSETEG00000010651-9952.500Echinops_telfairi
ENSSMAG00000007895lsm57667.347ENSETEG00000000777-9950.000Echinops_telfairi
ENSSMAG00000007895lsm510059.341ENSEBUG00000008540lsm510059.341Eptatretus_burgeri
ENSSMAG00000007895lsm510060.440ENSEASG00005003500LSM510060.440Equus_asinus_asinus
ENSSMAG00000007895lsm510054.878ENSECAG00000018445LSM510054.878Equus_caballus
ENSSMAG00000007895lsm57686.667ENSEEUG00000004102LSM57586.667Erinaceus_europaeus
ENSSMAG00000007895lsm510062.637ENSELUG00000007792lsm510062.637Esox_lucius
ENSSMAG00000007895lsm510060.440ENSFCAG00000000230LSM510060.440Felis_catus
ENSSMAG00000007895lsm57693.333ENSFALG00000001892LSM55493.333Ficedula_albicollis
ENSSMAG00000007895lsm510094.915ENSFDAG00000008767LSM510094.915Fukomys_damarensis
ENSSMAG00000007895lsm58179.167ENSFHEG00000004011lsm55579.167Fundulus_heteroclitus
ENSSMAG00000007895lsm59862.222ENSGMOG00000018235lsm510062.222Gadus_morhua
ENSSMAG00000007895lsm510059.341ENSGALG00000041625LSM510059.341Gallus_gallus
ENSSMAG00000007895lsm57695.556ENSGAFG00000016824lsm57395.556Gambusia_affinis
ENSSMAG00000007895lsm510063.736ENSGACG00000005528lsm510063.736Gasterosteus_aculeatus
ENSSMAG00000007895lsm510060.440ENSGAGG00000015593LSM510060.440Gopherus_agassizii
ENSSMAG00000007895lsm510060.440ENSGGOG00000043469LSM510060.440Gorilla_gorilla
ENSSMAG00000007895lsm59260.465ENSHBUG00000013773lsm59860.465Haplochromis_burtoni
ENSSMAG00000007895lsm510094.915ENSHGLG00000011765LSM510094.915Heterocephalus_glaber_female
ENSSMAG00000007895lsm510089.831ENSHGLG00100015610LSM510089.831Heterocephalus_glaber_male
ENSSMAG00000007895lsm510093.220ENSHCOG00000008288lsm510093.220Hippocampus_comes
ENSSMAG00000007895lsm510061.538ENSIPUG00000021095LSM510061.538Ictalurus_punctatus
ENSSMAG00000007895lsm57680.000ENSSTOG00000033886-5180.000Ictidomys_tridecemlineatus
ENSSMAG00000007895lsm510094.915ENSSTOG00000012662LSM510094.915Ictidomys_tridecemlineatus
ENSSMAG00000007895lsm510091.525ENSJJAG00000012145-10091.525Jaculus_jaculus
ENSSMAG00000007895lsm510057.895ENSJJAG00000016144-9257.895Jaculus_jaculus
ENSSMAG00000007895lsm58049.367ENSJJAG00000004475-10049.367Jaculus_jaculus
ENSSMAG00000007895lsm510061.538ENSKMAG00000021861lsm510061.538Kryptolebias_marmoratus
ENSSMAG00000007895lsm58656.627ENSLBEG00000009235LSM56556.627Labrus_bergylta
ENSSMAG00000007895lsm510059.341ENSLACG00000022448LSM510059.341Latimeria_chalumnae
ENSSMAG00000007895lsm510061.538ENSLOCG00000012903lsm510061.538Lepisosteus_oculatus
ENSSMAG00000007895lsm510060.440ENSLAFG00000029579LSM510060.440Loxodonta_africana
ENSSMAG00000007895lsm510058.228ENSLAFG00000027938-10058.228Loxodonta_africana
ENSSMAG00000007895lsm510059.341ENSMFAG00000030152-10059.341Macaca_fascicularis
ENSSMAG00000007895lsm510060.440ENSMFAG00000038508LSM510060.440Macaca_fascicularis
ENSSMAG00000007895lsm59851.111ENSMMUG00000039822-10051.111Macaca_mulatta
ENSSMAG00000007895lsm510059.341ENSMMUG00000030131-10059.341Macaca_mulatta
ENSSMAG00000007895lsm510059.341ENSMNEG00000037935-10059.341Macaca_nemestrina
ENSSMAG00000007895lsm57693.333ENSMNEG00000015331LSM57393.333Macaca_nemestrina
ENSSMAG00000007895lsm59749.438ENSMLEG00000034037-10049.438Mandrillus_leucophaeus
ENSSMAG00000007895lsm510060.440ENSMLEG00000024945LSM510060.440Mandrillus_leucophaeus
ENSSMAG00000007895lsm510057.143ENSMAMG00000012869lsm510057.143Mastacembelus_armatus
ENSSMAG00000007895lsm59260.465ENSMZEG00005019554lsm59860.465Maylandia_zebra
ENSSMAG00000007895lsm510059.341ENSMGAG00000012117LSM510059.341Meleagris_gallopavo
ENSSMAG00000007895lsm510059.341ENSMAUG00000008132-10059.341Mesocricetus_auratus
ENSSMAG00000007895lsm510094.915ENSMAUG00000012222Lsm510094.915Mesocricetus_auratus
ENSSMAG00000007895lsm59871.622ENSMICG00000033928-9671.622Microcebus_murinus
ENSSMAG00000007895lsm510060.440ENSMICG00000005353LSM510060.440Microcebus_murinus
ENSSMAG00000007895lsm510094.915ENSMOCG00000012018Lsm510094.915Microtus_ochrogaster
ENSSMAG00000007895lsm57695.556ENSMMOG00000004026lsm55295.556Mola_mola
ENSSMAG00000007895lsm57693.333ENSMODG00000013274-7393.333Monodelphis_domestica
ENSSMAG00000007895lsm57688.889ENSMALG00000010343lsm57388.889Monopterus_albus
ENSSMAG00000007895lsm510094.915MGP_CAROLIEiJ_G0028421Lsm510094.915Mus_caroli
ENSSMAG00000007895lsm510094.915ENSMUSG00000091625Lsm510094.915Mus_musculus
ENSSMAG00000007895lsm510094.915MGP_PahariEiJ_G0022171Lsm510094.915Mus_pahari
ENSSMAG00000007895lsm510094.915MGP_SPRETEiJ_G0029423Lsm510094.915Mus_spretus
ENSSMAG00000007895lsm510060.440ENSMLUG00000017028LSM510060.440Myotis_lucifugus
ENSSMAG00000007895lsm59862.500ENSNGAG00000022569-9662.500Nannospalax_galili
ENSSMAG00000007895lsm510094.915ENSNGAG00000024142Lsm510094.915Nannospalax_galili
ENSSMAG00000007895lsm510060.920ENSNGAG00000017707-10060.920Nannospalax_galili
ENSSMAG00000007895lsm57695.556ENSNBRG00000011386lsm56095.556Neolamprologus_brichardi
ENSSMAG00000007895lsm510060.440ENSNLEG00000015268LSM510060.440Nomascus_leucogenys
ENSSMAG00000007895lsm57693.333ENSOPRG00000002443LSM56093.333Ochotona_princeps
ENSSMAG00000007895lsm510094.915ENSODEG00000008258-10094.915Octodon_degus
ENSSMAG00000007895lsm510060.440ENSODEG00000019072-10060.440Octodon_degus
ENSSMAG00000007895lsm56951.220ENSOANG00000014540-5551.220Ornithorhynchus_anatinus
ENSSMAG00000007895lsm510060.440ENSOCUG00000029043LSM510060.440Oryctolagus_cuniculus
ENSSMAG00000007895lsm510060.440ENSORLG00000027725lsm55860.440Oryzias_latipes
ENSSMAG00000007895lsm57693.333ENSORLG00020003019lsm58655.172Oryzias_latipes_hni
ENSSMAG00000007895lsm510060.440ENSORLG00015003338lsm510060.440Oryzias_latipes_hsok
ENSSMAG00000007895lsm57693.333ENSOMEG00000001078lsm510059.341Oryzias_melastigma
ENSSMAG00000007895lsm510060.440ENSOGAG00000013892LSM510060.440Otolemur_garnettii
ENSSMAG00000007895lsm510060.440ENSOARG00000006944LSM510060.440Ovis_aries
ENSSMAG00000007895lsm510060.440ENSPPAG00000003697-10060.440Pan_paniscus
ENSSMAG00000007895lsm510060.440ENSPPRG00000002550LSM510060.440Panthera_pardus
ENSSMAG00000007895lsm510060.440ENSPTIG00000015604LSM510060.440Panthera_tigris_altaica
ENSSMAG00000007895lsm510045.977ENSPTRG00000049488-10051.724Pan_troglodytes
ENSSMAG00000007895lsm510060.440ENSPTRG00000019057LSM510060.440Pan_troglodytes
ENSSMAG00000007895lsm510060.440ENSPANG00000032179-10060.440Papio_anubis
ENSSMAG00000007895lsm59851.111ENSPANG00000032538-10051.111Papio_anubis
ENSSMAG00000007895lsm510058.242ENSPANG00000033477-10058.242Papio_anubis
ENSSMAG00000007895lsm510061.538ENSPKIG00000011910lsm510061.538Paramormyrops_kingsleyae
ENSSMAG00000007895lsm57393.023ENSPSIG00000014796LSM55893.023Pelodiscus_sinensis
ENSSMAG00000007895lsm57695.556ENSPMGG00000011699lsm57395.556Periophthalmus_magnuspinnatus
ENSSMAG00000007895lsm510045.122ENSPEMG00000022375-10045.122Peromyscus_maniculatus_bairdii
ENSSMAG00000007895lsm510062.637ENSPFOG00000001433lsm510062.637Poecilia_formosa
ENSSMAG00000007895lsm510062.637ENSPLAG00000009665lsm510062.637Poecilia_latipinna
ENSSMAG00000007895lsm510062.637ENSPMEG00000022265lsm510062.637Poecilia_mexicana
ENSSMAG00000007895lsm57695.556ENSPREG00000022452lsm57395.556Poecilia_reticulata
ENSSMAG00000007895lsm510058.242ENSPPYG00000017661LSM510058.242Pongo_abelii
ENSSMAG00000007895lsm58356.790ENSPCAG00000013740LSM510056.790Procavia_capensis
ENSSMAG00000007895lsm510060.440ENSPVAG00000009786LSM510060.440Pteropus_vampyrus
ENSSMAG00000007895lsm59260.465ENSPNYG00000022236lsm59860.465Pundamilia_nyererei
ENSSMAG00000007895lsm510061.538ENSPNAG00000001887lsm510061.538Pygocentrus_nattereri
ENSSMAG00000007895lsm510058.696ENSRNOG00000027305AABR07065089.110058.696Rattus_norvegicus
ENSSMAG00000007895lsm510060.440ENSRNOG00000042126Lsm510060.440Rattus_norvegicus
ENSSMAG00000007895lsm510059.341ENSRBIG00000024431-10059.341Rhinopithecus_bieti
ENSSMAG00000007895lsm57693.333ENSRBIG00000027803-7393.333Rhinopithecus_bieti
ENSSMAG00000007895lsm510060.440ENSRBIG00000030340-10060.440Rhinopithecus_bieti
ENSSMAG00000007895lsm510060.440ENSRBIG00000030714-10060.440Rhinopithecus_bieti
ENSSMAG00000007895lsm510060.440ENSRROG00000004655-10060.440Rhinopithecus_roxellana
ENSSMAG00000007895lsm510060.440ENSRROG00000023884-10060.440Rhinopithecus_roxellana
ENSSMAG00000007895lsm57693.333ENSRROG00000042782-7393.333Rhinopithecus_roxellana
ENSSMAG00000007895lsm510058.242ENSSBOG00000019124-10058.242Saimiri_boliviensis_boliviensis
ENSSMAG00000007895lsm510060.440ENSSBOG00000012312LSM510060.440Saimiri_boliviensis_boliviensis
ENSSMAG00000007895lsm510060.759ENSSBOG00000034794-10060.759Saimiri_boliviensis_boliviensis
ENSSMAG00000007895lsm510061.538ENSSFOG00015010099lsm510061.538Scleropages_formosus
ENSSMAG00000007895lsm57695.556ENSSDUG00000010762lsm57395.556Seriola_dumerili
ENSSMAG00000007895lsm510096.610ENSSLDG00000025242lsm510096.610Seriola_lalandi_dorsalis
ENSSMAG00000007895lsm57693.333ENSSPUG00000002690LSM57393.333Sphenodon_punctatus
ENSSMAG00000007895lsm510098.305ENSSPAG00000005435lsm510098.305Stegastes_partitus
ENSSMAG00000007895lsm57693.333ENSSSCG00000026064-10060.440Sus_scrofa
ENSSMAG00000007895lsm510058.242ENSTGUG00000017539LSM510058.242Taeniopygia_guttata
ENSSMAG00000007895lsm510059.341ENSTNIG00000008695lsm510059.341Tetraodon_nigroviridis
ENSSMAG00000007895lsm510060.440ENSTBEG00000004876LSM510060.440Tupaia_belangeri
ENSSMAG00000007895lsm510060.440ENSTTRG00000004237LSM510060.440Tursiops_truncatus
ENSSMAG00000007895lsm59860.000ENSUMAG00000002625LSM56560.000Ursus_maritimus
ENSSMAG00000007895lsm510060.440ENSVPAG00000009985LSM510060.440Vicugna_pacos
ENSSMAG00000007895lsm510060.440ENSVVUG00000021311LSM510060.440Vulpes_vulpes
ENSSMAG00000007895lsm58556.098ENSXETG00000026465lsm510056.098Xenopus_tropicalis
ENSSMAG00000007895lsm57695.556ENSXCOG00000015348lsm57395.556Xiphophorus_couchianus
ENSSMAG00000007895lsm510062.637ENSXMAG00000029988lsm510062.637Xiphophorus_maculatus

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