EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSMAG00000008088 (Gene tree)
Gene ID: -
Gene Symbol: npm1b
Alias: npm4
Full Name: nucleophosmin 1b
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Plus strand
Length: 17641 bases
Position: chr13:3585939-3603579
Accession: ZDB-GENE-080723-7
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000013166	Nucleoplasmin	PF03066.15	1.3e-37	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000013337	-	5697	-	ENSSMAP00000013166	295 (aa)	-	A0A2U9C540

Gene Model

Click here to download ENSSMAG00000008088's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000008088's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSMAG00000008088	npm1b	97	37.457	ENSSMAG00000019090	npm1a	96	38.870

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000008088	npm1b	100	83.502	ENSAPOG00000004268	npm1b	100	83.502	Acanthochromis_polyacanthus
ENSSMAG00000008088	npm1b	100	84.122	ENSAOCG00000012549	npm1b	100	84.122	Amphiprion_ocellaris
ENSSMAG00000008088	npm1b	100	83.108	ENSAPEG00000000868	npm1b	100	83.108	Amphiprion_percula
ENSSMAG00000008088	npm1b	100	83.278	ENSATEG00000006254	npm1b	100	83.612	Anabas_testudineus
ENSSMAG00000008088	npm1b	98	43.046	ENSACAG00000015626	-	100	40.984	Anolis_carolinensis
ENSSMAG00000008088	npm1b	98	60.726	ENSAMXG00000042148	npm1b	99	60.596	Astyanax_mexicanus
ENSSMAG00000008088	npm1b	77	33.333	ENSCAFG00000023359	-	90	31.556	Canis_familiaris
ENSSMAG00000008088	npm1b	99	43.934	ENSCPBG00000021221	-	60	44.702	Chrysemys_picta_bellii
ENSSMAG00000008088	npm1b	100	78.000	ENSCSEG00000004530	npm1b	100	77.333	Cynoglossus_semilaevis
ENSSMAG00000008088	npm1b	100	71.812	ENSCVAG00000013016	npm1b	100	72.483	Cyprinodon_variegatus
ENSSMAG00000008088	npm1b	99	63.880	ENSDARG00000037675	npm1b	99	64.548	Danio_rerio
ENSSMAG00000008088	npm1b	99	60.968	ENSELUG00000022123	npm1b	99	60.968	Esox_lucius
ENSSMAG00000008088	npm1b	94	44.366	ENSFALG00000003320	-	94	44.366	Ficedula_albicollis
ENSSMAG00000008088	npm1b	100	71.667	ENSFHEG00000020794	npm1b	100	71.667	Fundulus_heteroclitus
ENSSMAG00000008088	npm1b	98	59.524	ENSGMOG00000002689	npm1b	100	59.184	Gadus_morhua
ENSSMAG00000008088	npm1b	98	44.590	ENSGALG00000002197	-	73	45.098	Gallus_gallus
ENSSMAG00000008088	npm1b	100	70.370	ENSGAFG00000017709	npm1b	100	70.370	Gambusia_affinis
ENSSMAG00000008088	npm1b	98	81.849	ENSGACG00000016706	npm1b	100	81.849	Gasterosteus_aculeatus
ENSSMAG00000008088	npm1b	98	44.371	ENSGAGG00000020250	-	100	44.702	Gopherus_agassizii
ENSSMAG00000008088	npm1b	100	78.261	ENSHBUG00000019903	npm1b	95	80.936	Haplochromis_burtoni
ENSSMAG00000008088	npm1b	100	73.986	ENSHCOG00000003895	npm1b	100	73.986	Hippocampus_comes
ENSSMAG00000008088	npm1b	99	58.766	ENSIPUG00000020165	npm1b	99	56.678	Ictalurus_punctatus
ENSSMAG00000008088	npm1b	99	77.816	ENSKMAG00000008260	npm1b	99	78.157	Kryptolebias_marmoratus
ENSSMAG00000008088	npm1b	92	43.667	ENSLACG00000001779	-	100	40.138	Latimeria_chalumnae
ENSSMAG00000008088	npm1b	93	49.153	ENSLOCG00000001942	npm1b	100	49.324	Lepisosteus_oculatus
ENSSMAG00000008088	npm1b	72	78.995	ENSMAMG00000015335	npm1b	100	79.452	Mastacembelus_armatus
ENSSMAG00000008088	npm1b	93	44.523	ENSMGAG00000001591	-	100	43.617	Meleagris_gallopavo
ENSSMAG00000008088	npm1b	81	83.884	ENSMALG00000015383	npm1b	100	87.190	Monopterus_albus
ENSSMAG00000008088	npm1b	99	73.311	ENSONIG00000001397	npm1b	98	76.712	Oreochromis_niloticus
ENSSMAG00000008088	npm1b	100	66.554	ENSOMEG00000003414	npm1b	100	65.878	Oryzias_melastigma
ENSSMAG00000008088	npm1b	99	56.825	ENSPKIG00000020050	npm1b	99	57.460	Paramormyrops_kingsleyae
ENSSMAG00000008088	npm1b	96	44.558	ENSPSIG00000011204	-	93	42.712	Pelodiscus_sinensis
ENSSMAG00000008088	npm1b	100	73.154	ENSPFOG00000018357	npm1b	100	73.826	Poecilia_formosa
ENSSMAG00000008088	npm1b	98	63.333	ENSPNAG00000005498	npm1b	99	62.876	Pygocentrus_nattereri
ENSSMAG00000008088	npm1b	99	56.856	ENSSFOG00015005064	npm1b	100	57.770	Scleropages_formosus
ENSSMAG00000008088	npm1b	100	89.597	ENSSDUG00000007726	npm1b	100	89.597	Seriola_dumerili
ENSSMAG00000008088	npm1b	100	89.933	ENSSLDG00000021396	npm1b	100	89.933	Seriola_lalandi_dorsalis
ENSSMAG00000008088	npm1b	59	42.857	ENSSPUG00000015604	-	90	42.778	Sphenodon_punctatus
ENSSMAG00000008088	npm1b	100	85.859	ENSSPAG00000011152	npm1b	100	85.859	Stegastes_partitus
ENSSMAG00000008088	npm1b	93	45.775	ENSTGUG00000014970	-	100	45.775	Taeniopygia_guttata
ENSSMAG00000008088	npm1b	100	78.188	ENSTRUG00000008105	npm1b	95	77.181	Takifugu_rubripes
ENSSMAG00000008088	npm1b	99	72.148	ENSTNIG00000013057	npm1b	100	72.148	Tetraodon_nigroviridis
ENSSMAG00000008088	npm1b	99	42.810	ENSXETG00000008403	npm1	99	39.344	Xenopus_tropicalis
ENSSMAG00000008088	npm1b	100	73.490	ENSXMAG00000001986	npm1b	100	73.826	Xiphophorus_maculatus