EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSMAG00000009137 (Gene tree)
Gene ID: -
Gene Symbol: polr2a
Alias: im:7136071
Full Name: polymerase (RNA) II (DNA directed) polypeptide A
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Plus strand
Length: 14113 bases
Position: chr2:5728832-5742944
Accession: ZDB-GENE-041008-78
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000014924	RNA_pol_Rpb1_5	PF04998.17	2.1e-101	1	1
ENSSMAP00000014924	RNA_pol_Rpb1_R	PF05001.13	5.8e-18	1	25
ENSSMAP00000014924	RNA_pol_Rpb1_R	PF05001.13	5.8e-18	2	25
ENSSMAP00000014924	RNA_pol_Rpb1_R	PF05001.13	5.8e-18	3	25
ENSSMAP00000014924	RNA_pol_Rpb1_R	PF05001.13	5.8e-18	4	25
ENSSMAP00000014924	RNA_pol_Rpb1_R	PF05001.13	5.8e-18	5	25
ENSSMAP00000014924	RNA_pol_Rpb1_R	PF05001.13	5.8e-18	6	25
ENSSMAP00000014924	RNA_pol_Rpb1_R	PF05001.13	5.8e-18	7	25
ENSSMAP00000014924	RNA_pol_Rpb1_R	PF05001.13	5.8e-18	8	25
ENSSMAP00000014924	RNA_pol_Rpb1_R	PF05001.13	5.8e-18	9	25
ENSSMAP00000014924	RNA_pol_Rpb1_R	PF05001.13	5.8e-18	10	25
ENSSMAP00000014924	RNA_pol_Rpb1_R	PF05001.13	5.8e-18	11	25
ENSSMAP00000014924	RNA_pol_Rpb1_R	PF05001.13	5.8e-18	12	25
ENSSMAP00000014924	RNA_pol_Rpb1_R	PF05001.13	5.8e-18	13	25
ENSSMAP00000014924	RNA_pol_Rpb1_R	PF05001.13	5.8e-18	14	25
ENSSMAP00000014924	RNA_pol_Rpb1_R	PF05001.13	5.8e-18	15	25
ENSSMAP00000014924	RNA_pol_Rpb1_R	PF05001.13	5.8e-18	16	25
ENSSMAP00000014924	RNA_pol_Rpb1_R	PF05001.13	5.8e-18	17	25
ENSSMAP00000014924	RNA_pol_Rpb1_R	PF05001.13	5.8e-18	18	25
ENSSMAP00000014924	RNA_pol_Rpb1_R	PF05001.13	5.8e-18	19	25
ENSSMAP00000014924	RNA_pol_Rpb1_R	PF05001.13	5.8e-18	20	25
ENSSMAP00000014924	RNA_pol_Rpb1_R	PF05001.13	5.8e-18	21	25
ENSSMAP00000014924	RNA_pol_Rpb1_R	PF05001.13	5.8e-18	22	25
ENSSMAP00000014924	RNA_pol_Rpb1_R	PF05001.13	5.8e-18	23	25
ENSSMAP00000014924	RNA_pol_Rpb1_R	PF05001.13	5.8e-18	24	25
ENSSMAP00000014924	RNA_pol_Rpb1_R	PF05001.13	5.8e-18	25	25
ENSSMAP00000014924	RNA_pol_Rpb1_4	PF05000.17	1.3e-37	1	1
ENSSMAP00000014924	RNA_pol_Rpb1_2	PF00623.20	1.8e-74	1	1
ENSSMAP00000014924	RNA_pol_Rpb1_3	PF04983.18	4.8e-50	1	1
ENSSMAP00000014924	RNA_pol_Rpb1_1	PF04997.12	1.7e-107	1	1
ENSSMAP00000014924	RNA_pol_Rpb1_7	PF04990.12	8.6e-55	1	1
ENSSMAP00000014924	RNA_pol_Rpb1_6	PF04992.14	6.1e-67	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000015113	-	8786	-	ENSSMAP00000014924	1959 (aa)	-	A0A2U9B1D0

Gene Model

Click here to download ENSSMAG00000009137's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000009137's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSMAG00000009137	polr2a	66	38.352	ENSSMAG00000001780	polr3a	91	38.011
ENSSMAG00000009137	polr2a	50	44.262	ENSSMAG00000014342	polr1a	66	44.262

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000009137	polr2a	87	98.387	ENSAPOG00000006552	polr2a	90	98.387	Acanthochromis_polyacanthus
ENSSMAG00000009137	polr2a	82	93.680	ENSAMEG00000016265	-	82	93.688	Ailuropoda_melanoleuca
ENSSMAG00000009137	polr2a	100	95.422	ENSACIG00000015982	polr2a	100	95.931	Amphilophus_citrinellus
ENSSMAG00000009137	polr2a	96	96.154	ENSAOCG00000004255	polr2a	100	93.211	Amphiprion_ocellaris
ENSSMAG00000009137	polr2a	100	95.982	ENSAPEG00000012623	polr2a	100	96.490	Amphiprion_percula
ENSSMAG00000009137	polr2a	100	95.320	ENSATEG00000019644	polr2a	100	95.829	Anabas_testudineus
ENSSMAG00000009137	polr2a	82	94.224	ENSACAG00000014561	POLR2A	82	94.231	Anolis_carolinensis
ENSSMAG00000009137	polr2a	82	93.917	ENSANAG00000020093	-	82	93.924	Aotus_nancymaae
ENSSMAG00000009137	polr2a	100	95.219	ENSACLG00000006735	polr2a	100	95.677	Astatotilapia_calliptera
ENSSMAG00000009137	polr2a	100	94.659	ENSAMXG00000020046	polr2a	100	95.168	Astyanax_mexicanus
ENSSMAG00000009137	polr2a	82	93.917	ENSBTAG00000046765	POLR2A	82	93.924	Bos_taurus
ENSSMAG00000009137	polr2a	94	71.429	WBGene00000123	ama-1	99	79.612	Caenorhabditis_elegans
ENSSMAG00000009137	polr2a	85	93.979	ENSCAFG00000016532	POLR2A	99	93.986	Canis_familiaris
ENSSMAG00000009137	polr2a	82	93.114	ENSCAFG00020007929	-	82	93.123	Canis_lupus_dingo
ENSSMAG00000009137	polr2a	82	93.917	ENSCHIG00000027173	-	82	93.924	Capra_hircus
ENSSMAG00000009137	polr2a	90	93.217	ENSTSYG00000012803	-	85	91.213	Carlito_syrichta
ENSSMAG00000009137	polr2a	98	90.460	ENSCAPG00000001882	-	100	93.173	Cavia_aperea
ENSSMAG00000009137	polr2a	99	90.349	ENSCPOG00000014812	-	100	92.746	Cavia_porcellus
ENSSMAG00000009137	polr2a	82	93.917	ENSCCAG00000020938	-	82	93.924	Cebus_capucinus
ENSSMAG00000009137	polr2a	82	93.917	ENSCATG00000013680	-	82	93.924	Cercocebus_atys
ENSSMAG00000009137	polr2a	93	89.913	ENSCLAG00000012196	-	82	93.800	Chinchilla_lanigera
ENSSMAG00000009137	polr2a	82	85.256	ENSCSAG00000011644	-	82	85.274	Chlorocebus_sabaeus
ENSSMAG00000009137	polr2a	91	82.670	ENSCPBG00000012697	POLR2A	94	90.244	Chrysemys_picta_bellii
ENSSMAG00000009137	polr2a	98	76.671	ENSCING00000007884	-	99	77.228	Ciona_intestinalis
ENSSMAG00000009137	polr2a	98	79.630	ENSCSAVG00000008334	-	99	81.731	Ciona_savignyi
ENSSMAG00000009137	polr2a	82	93.234	ENSCANG00000010622	-	82	93.242	Colobus_angolensis_palliatus
ENSSMAG00000009137	polr2a	93	86.903	ENSCGRG00001003538	Polr2a	81	87.600	Cricetulus_griseus_chok1gshd
ENSSMAG00000009137	polr2a	83	89.897	ENSCGRG00000012105	Polr2a	93	90.257	Cricetulus_griseus_crigri
ENSSMAG00000009137	polr2a	99	94.504	ENSCSEG00000002635	polr2a	100	95.013	Cynoglossus_semilaevis
ENSSMAG00000009137	polr2a	82	97.643	ENSCVAG00000005156	polr2a	82	97.643	Cyprinodon_variegatus
ENSSMAG00000009137	polr2a	100	96.441	ENSDARG00000099966	polr2a	100	96.441	Danio_rerio
ENSSMAG00000009137	polr2a	82	91.124	ENSDNOG00000016482	-	82	91.135	Dasypus_novemcinctus
ENSSMAG00000009137	polr2a	82	93.917	ENSDORG00000008667	Polr2a	82	93.924	Dipodomys_ordii
ENSSMAG00000009137	polr2a	99	70.259	FBgn0003277	RpII215	98	74.969	Drosophila_melanogaster
ENSSMAG00000009137	polr2a	94	89.675	ENSETEG00000002540	-	87	90.753	Echinops_telfairi
ENSSMAG00000009137	polr2a	82	86.900	ENSEBUG00000013967	polr2a	82	86.886	Eptatretus_burgeri
ENSSMAG00000009137	polr2a	82	91.868	ENSEASG00005019114	-	83	91.878	Equus_asinus_asinus
ENSSMAG00000009137	polr2a	82	93.917	ENSECAG00000018485	POLR2A	82	93.924	Equus_caballus
ENSSMAG00000009137	polr2a	83	93.858	ENSEEUG00000001154	-	95	93.858	Erinaceus_europaeus
ENSSMAG00000009137	polr2a	89	92.232	ENSELUG00000014284	polr2a	84	92.910	Esox_lucius
ENSSMAG00000009137	polr2a	82	93.979	ENSFDAG00000008287	-	82	93.986	Fukomys_damarensis
ENSSMAG00000009137	polr2a	85	97.519	ENSFHEG00000001768	polr2a	94	97.519	Fundulus_heteroclitus
ENSSMAG00000009137	polr2a	99	92.771	ENSGMOG00000007725	polr2a	100	92.797	Gadus_morhua
ENSSMAG00000009137	polr2a	99	100.000	ENSGAFG00000005389	polr2a	100	93.282	Gambusia_affinis
ENSSMAG00000009137	polr2a	99	94.015	ENSGACG00000019366	polr2a	100	93.792	Gasterosteus_aculeatus
ENSSMAG00000009137	polr2a	90	90.325	ENSGGOG00000014800	-	96	92.284	Gorilla_gorilla
ENSSMAG00000009137	polr2a	89	95.161	ENSHBUG00000018937	polr2a	98	95.533	Haplochromis_burtoni
ENSSMAG00000009137	polr2a	82	93.979	ENSHGLG00000012381	POLR2A	82	93.986	Heterocephalus_glaber_female
ENSSMAG00000009137	polr2a	82	93.979	ENSHGLG00100014843	POLR2A	82	93.986	Heterocephalus_glaber_male
ENSSMAG00000009137	polr2a	82	97.208	ENSHCOG00000011874	polr2a	82	97.208	Hippocampus_comes
ENSSMAG00000009137	polr2a	100	94.303	ENSIPUG00000002613	Polr2a	100	94.812	Ictalurus_punctatus
ENSSMAG00000009137	polr2a	82	93.917	ENSSTOG00000001304	-	82	93.924	Ictidomys_tridecemlineatus
ENSSMAG00000009137	polr2a	82	93.917	ENSJJAG00000013049	Polr2a	82	93.924	Jaculus_jaculus
ENSSMAG00000009137	polr2a	82	100.000	ENSKMAG00000016343	polr2a	86	100.000	Kryptolebias_marmoratus
ENSSMAG00000009137	polr2a	99	95.623	ENSLBEG00000027652	polr2a	100	96.132	Labrus_bergylta
ENSSMAG00000009137	polr2a	81	85.199	ENSLACG00000012071	POLR2A	81	85.209	Latimeria_chalumnae
ENSSMAG00000009137	polr2a	87	96.408	ENSLOCG00000013863	polr2a	97	95.965	Lepisosteus_oculatus
ENSSMAG00000009137	polr2a	99	90.633	ENSLAFG00000008626	-	97	93.924	Loxodonta_africana
ENSSMAG00000009137	polr2a	50	92.543	ENSMFAG00000007042	-	99	92.543	Macaca_fascicularis
ENSSMAG00000009137	polr2a	82	93.917	ENSMMUG00000023620	-	91	93.924	Macaca_mulatta
ENSSMAG00000009137	polr2a	82	93.482	ENSMNEG00000040407	-	82	93.490	Macaca_nemestrina
ENSSMAG00000009137	polr2a	81	89.557	ENSMLEG00000030263	-	99	92.543	Mandrillus_leucophaeus
ENSSMAG00000009137	polr2a	82	97.891	ENSMAMG00000003351	polr2a	82	97.891	Mastacembelus_armatus
ENSSMAG00000009137	polr2a	100	94.354	ENSMZEG00005021429	polr2a	100	94.812	Maylandia_zebra
ENSSMAG00000009137	polr2a	50	93.578	ENSMAUG00000021055	-	99	93.578	Mesocricetus_auratus
ENSSMAG00000009137	polr2a	82	93.855	ENSMICG00000013372	-	98	92.938	Microcebus_murinus
ENSSMAG00000009137	polr2a	99	89.467	ENSMOCG00000018279	Polr2a	100	89.679	Microtus_ochrogaster
ENSSMAG00000009137	polr2a	90	97.457	ENSMMOG00000012515	polr2a	92	97.457	Mola_mola
ENSSMAG00000009137	polr2a	82	93.855	ENSMODG00000007009	-	82	93.862	Monodelphis_domestica
ENSSMAG00000009137	polr2a	91	98.017	ENSMALG00000008716	polr2a	99	95.658	Monopterus_albus
ENSSMAG00000009137	polr2a	82	93.917	MGP_CAROLIEiJ_G0016587	Polr2a	82	93.924	Mus_caroli
ENSSMAG00000009137	polr2a	82	93.917	ENSMUSG00000005198	Polr2a	82	93.924	Mus_musculus
ENSSMAG00000009137	polr2a	82	91.842	MGP_PahariEiJ_G0017718	Polr2a	82	91.852	Mus_pahari
ENSSMAG00000009137	polr2a	82	93.917	MGP_SPRETEiJ_G0017423	Polr2a	82	93.924	Mus_spretus
ENSSMAG00000009137	polr2a	82	94.041	ENSMPUG00000009648	-	82	94.048	Mustela_putorius_furo
ENSSMAG00000009137	polr2a	82	93.304	ENSMLUG00000009088	-	82	93.313	Myotis_lucifugus
ENSSMAG00000009137	polr2a	82	93.917	ENSNGAG00000002543	Polr2a	82	93.924	Nannospalax_galili
ENSSMAG00000009137	polr2a	100	95.371	ENSNBRG00000002005	polr2a	100	95.829	Neolamprologus_brichardi
ENSSMAG00000009137	polr2a	82	92.508	ENSNLEG00000009460	-	82	92.517	Nomascus_leucogenys
ENSSMAG00000009137	polr2a	94	94.880	ENSMEUG00000008611	-	93	94.880	Notamacropus_eugenii
ENSSMAG00000009137	polr2a	81	93.746	ENSOPRG00000015116	-	99	93.746	Ochotona_princeps
ENSSMAG00000009137	polr2a	82	97.829	ENSONIG00000009231	polr2a	82	97.829	Oreochromis_niloticus
ENSSMAG00000009137	polr2a	99	89.885	ENSOCUG00000017929	-	100	93.800	Oryctolagus_cuniculus
ENSSMAG00000009137	polr2a	100	95.117	ENSORLG00000006431	polr2a	100	95.626	Oryzias_latipes
ENSSMAG00000009137	polr2a	100	95.117	ENSORLG00020010235	polr2a	100	95.626	Oryzias_latipes_hni
ENSSMAG00000009137	polr2a	100	95.015	ENSORLG00015007075	polr2a	100	95.524	Oryzias_latipes_hsok
ENSSMAG00000009137	polr2a	92	97.449	ENSOMEG00000010713	polr2a	100	97.449	Oryzias_melastigma
ENSSMAG00000009137	polr2a	82	93.917	ENSOGAG00000033608	-	82	93.924	Otolemur_garnettii
ENSSMAG00000009137	polr2a	95	93.917	ENSOARG00000013874	-	85	93.924	Ovis_aries
ENSSMAG00000009137	polr2a	82	91.998	ENSPPAG00000043734	-	89	91.478	Pan_paniscus
ENSSMAG00000009137	polr2a	82	92.508	ENSPTRG00000008691	POLR2A	82	92.517	Pan_troglodytes
ENSSMAG00000009137	polr2a	82	93.234	ENSPANG00000024099	-	82	93.242	Papio_anubis
ENSSMAG00000009137	polr2a	78	95.194	ENSPKIG00000005727	polr2a	85	80.702	Paramormyrops_kingsleyae
ENSSMAG00000009137	polr2a	98	92.345	ENSPSIG00000014006	POLR2A	100	92.255	Pelodiscus_sinensis
ENSSMAG00000009137	polr2a	100	97.080	ENSPMGG00000019734	polr2a	100	97.080	Periophthalmus_magnuspinnatus
ENSSMAG00000009137	polr2a	82	93.917	ENSPEMG00000012521	Polr2a	82	93.924	Peromyscus_maniculatus_bairdii
ENSSMAG00000009137	polr2a	86	93.859	ENSPCIG00000028851	-	82	93.859	Phascolarctos_cinereus
ENSSMAG00000009137	polr2a	85	97.705	ENSPFOG00000007890	polr2a	85	97.705	Poecilia_formosa
ENSSMAG00000009137	polr2a	85	97.705	ENSPLAG00000007399	polr2a	99	94.040	Poecilia_latipinna
ENSSMAG00000009137	polr2a	89	95.409	ENSPMEG00000002071	polr2a	99	95.726	Poecilia_mexicana
ENSSMAG00000009137	polr2a	100	95.320	ENSPREG00000013122	polr2a	100	95.829	Poecilia_reticulata
ENSSMAG00000009137	polr2a	82	93.917	ENSPPYG00000007924	-	82	93.924	Pongo_abelii
ENSSMAG00000009137	polr2a	74	94.474	ENSPCAG00000006951	-	74	94.474	Procavia_capensis
ENSSMAG00000009137	polr2a	82	92.681	ENSPCOG00000025260	-	82	92.690	Propithecus_coquereli
ENSSMAG00000009137	polr2a	82	93.606	ENSPVAG00000005069	-	82	93.614	Pteropus_vampyrus
ENSSMAG00000009137	polr2a	100	88.412	ENSPNYG00000022340	polr2a	100	90.590	Pundamilia_nyererei
ENSSMAG00000009137	polr2a	82	96.836	ENSPNAG00000011237	polr2a	82	96.836	Pygocentrus_nattereri
ENSSMAG00000009137	polr2a	82	93.979	ENSRNOG00000028834	Polr2a	82	93.986	Rattus_norvegicus
ENSSMAG00000009137	polr2a	82	93.544	ENSRBIG00000002471	-	95	93.552	Rhinopithecus_bieti
ENSSMAG00000009137	polr2a	82	93.917	ENSRROG00000029583	-	89	93.056	Rhinopithecus_roxellana
ENSSMAG00000009137	polr2a	83	50.521	YDL140C	RPO21	99	83.544	Saccharomyces_cerevisiae
ENSSMAG00000009137	polr2a	82	93.917	ENSSBOG00000000808	-	82	93.924	Saimiri_boliviensis_boliviensis
ENSSMAG00000009137	polr2a	92	93.855	ENSSHAG00000002858	-	84	93.862	Sarcophilus_harrisii
ENSSMAG00000009137	polr2a	99	94.411	ENSSFOG00015023275	polr2a	100	94.919	Scleropages_formosus
ENSSMAG00000009137	polr2a	100	95.829	ENSSDUG00000020466	polr2a	100	96.338	Seriola_dumerili
ENSSMAG00000009137	polr2a	100	95.880	ENSSLDG00000020613	polr2a	100	96.389	Seriola_lalandi_dorsalis
ENSSMAG00000009137	polr2a	95	89.533	ENSSARG00000005875	-	99	90.335	Sorex_araneus
ENSSMAG00000009137	polr2a	100	100.000	ENSSPAG00000016741	polr2a	95	100.000	Stegastes_partitus
ENSSMAG00000009137	polr2a	82	92.986	ENSSSCG00000028278	-	82	92.994	Sus_scrofa
ENSSMAG00000009137	polr2a	98	91.878	ENSTRUG00000012320	polr2a	81	91.878	Takifugu_rubripes
ENSSMAG00000009137	polr2a	92	96.278	ENSTNIG00000010136	polr2a	100	96.278	Tetraodon_nigroviridis
ENSSMAG00000009137	polr2a	74	94.898	ENSTBEG00000013294	-	58	94.898	Tupaia_belangeri
ENSSMAG00000009137	polr2a	82	92.241	ENSTTRG00000014273	-	82	92.250	Tursiops_truncatus
ENSSMAG00000009137	polr2a	92	93.622	ENSUAMG00000014866	-	100	93.630	Ursus_americanus
ENSSMAG00000009137	polr2a	86	89.944	ENSUMAG00000015732	-	83	89.944	Ursus_maritimus
ENSSMAG00000009137	polr2a	65	97.826	ENSVPAG00000008842	-	76	97.826	Vicugna_pacos
ENSSMAG00000009137	polr2a	82	93.979	ENSVVUG00000027878	-	83	93.986	Vulpes_vulpes
ENSSMAG00000009137	polr2a	81	93.833	ENSXETG00000012465	polr2a	82	93.840	Xenopus_tropicalis
ENSSMAG00000009137	polr2a	93	95.946	ENSXCOG00000001804	polr2a	95	95.347	Xiphophorus_couchianus
ENSSMAG00000009137	polr2a	100	95.320	ENSXMAG00000015687	polr2a	100	95.829	Xiphophorus_maculatus