EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSMAG00000009482 (Gene tree)
Gene ID: -
Gene Symbol: patl1
Alias: fa11d04|wu:fa11d04|zgc:158239
Full Name: protein associated with topoisomerase II homolog 1 (yeast)
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Minus strand
Length: 11528 bases
Position: chr8:19316362-19327889
Accession: ZDB-GENE-070209-83
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000015483	PAT1	PF09770.9	1.9e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000015678	-	2973	-	ENSSMAP00000015483	829 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000009482's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000009482's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000009482	patl1	51	36.854	ENSG00000229474	PATL2	99	38.798	Homo_sapiens
ENSSMAG00000009482	patl1	81	54.321	ENSG00000166889	PATL1	94	54.321	Homo_sapiens
ENSSMAG00000009482	patl1	82	91.304	ENSAPOG00000021290	patl1	99	85.635	Acanthochromis_polyacanthus
ENSSMAG00000009482	patl1	52	35.088	ENSAPOG00000022988	patl2	62	34.988	Acanthochromis_polyacanthus
ENSSMAG00000009482	patl1	81	54.321	ENSAMEG00000014215	PATL1	94	54.321	Ailuropoda_melanoleuca
ENSSMAG00000009482	patl1	99	79.493	ENSACIG00000005182	patl1	96	89.189	Amphilophus_citrinellus
ENSSMAG00000009482	patl1	94	81.091	ENSAOCG00000021993	patl1	95	80.838	Amphiprion_ocellaris
ENSSMAG00000009482	patl1	100	85.646	ENSAPEG00000021391	patl1	100	86.005	Amphiprion_percula
ENSSMAG00000009482	patl1	100	86.826	ENSATEG00000002230	patl1	100	86.811	Anabas_testudineus
ENSSMAG00000009482	patl1	51	39.024	ENSAPLG00000003980	PATL2	64	40.150	Anas_platyrhynchos
ENSSMAG00000009482	patl1	50	47.629	ENSAPLG00000013394	PATL1	93	45.455	Anas_platyrhynchos
ENSSMAG00000009482	patl1	78	57.500	ENSACAG00000006607	PATL1	89	65.574	Anolis_carolinensis
ENSSMAG00000009482	patl1	81	54.321	ENSANAG00000023078	PATL1	94	54.321	Aotus_nancymaae
ENSSMAG00000009482	patl1	100	84.976	ENSACLG00000005144	patl1	100	84.856	Astatotilapia_calliptera
ENSSMAG00000009482	patl1	100	72.695	ENSAMXG00000010731	patl1	99	89.286	Astyanax_mexicanus
ENSSMAG00000009482	patl1	52	37.284	ENSAMXG00000020293	patl2	61	37.002	Astyanax_mexicanus
ENSSMAG00000009482	patl1	81	53.086	ENSBTAG00000005913	PATL1	92	61.667	Bos_taurus
ENSSMAG00000009482	patl1	81	54.321	ENSCJAG00000016192	PATL1	94	54.321	Callithrix_jacchus
ENSSMAG00000009482	patl1	51	35.635	ENSCJAG00000002379	PATL2	77	36.782	Callithrix_jacchus
ENSSMAG00000009482	patl1	81	54.321	ENSCAFG00000007581	PATL1	94	54.321	Canis_familiaris
ENSSMAG00000009482	patl1	81	54.321	ENSCAFG00020001648	PATL1	95	54.321	Canis_lupus_dingo
ENSSMAG00000009482	patl1	81	54.321	ENSCHIG00000025913	PATL1	94	54.321	Capra_hircus
ENSSMAG00000009482	patl1	52	37.613	ENSCHIG00000026665	PATL2	76	38.015	Capra_hircus
ENSSMAG00000009482	patl1	82	54.321	ENSTSYG00000012748	PATL1	89	61.667	Carlito_syrichta
ENSSMAG00000009482	patl1	51	36.343	ENSTSYG00000032456	PATL2	73	37.010	Carlito_syrichta
ENSSMAG00000009482	patl1	81	55.556	ENSCAPG00000013668	PATL1	91	63.934	Cavia_aperea
ENSSMAG00000009482	patl1	81	55.556	ENSCPOG00000006827	PATL1	92	63.934	Cavia_porcellus
ENSSMAG00000009482	patl1	81	54.321	ENSCCAG00000023759	PATL1	94	54.321	Cebus_capucinus
ENSSMAG00000009482	patl1	81	54.321	ENSCATG00000009629	PATL1	94	54.321	Cercocebus_atys
ENSSMAG00000009482	patl1	80	57.534	ENSCLAG00000003427	PATL1	94	57.534	Chinchilla_lanigera
ENSSMAG00000009482	patl1	72	49.771	ENSCSAG00000006095	PATL1	93	47.939	Chlorocebus_sabaeus
ENSSMAG00000009482	patl1	60	57.000	ENSCHOG00000001611	PATL1	83	57.000	Choloepus_hoffmanni
ENSSMAG00000009482	patl1	51	38.479	ENSCPBG00000006150	PATL2	62	39.568	Chrysemys_picta_bellii
ENSSMAG00000009482	patl1	51	36.652	ENSCANG00000013856	PATL2	74	38.049	Colobus_angolensis_palliatus
ENSSMAG00000009482	patl1	81	53.750	ENSCANG00000039197	PATL1	94	53.750	Colobus_angolensis_palliatus
ENSSMAG00000009482	patl1	81	53.086	ENSCGRG00001024927	Patl1	91	61.667	Cricetulus_griseus_chok1gshd
ENSSMAG00000009482	patl1	81	51.852	ENSCGRG00000000461	Patl1	91	61.538	Cricetulus_griseus_crigri
ENSSMAG00000009482	patl1	100	86.124	ENSCSEG00000008261	patl1	100	83.612	Cynoglossus_semilaevis
ENSSMAG00000009482	patl1	50	34.571	ENSCSEG00000009438	patl2	57	33.838	Cynoglossus_semilaevis
ENSSMAG00000009482	patl1	94	82.322	ENSCVAG00000006664	patl1	92	87.500	Cyprinodon_variegatus
ENSSMAG00000009482	patl1	100	71.703	ENSDARG00000017423	patl1	100	70.215	Danio_rerio
ENSSMAG00000009482	patl1	70	52.055	ENSDNOG00000038865	PATL1	99	46.422	Dasypus_novemcinctus
ENSSMAG00000009482	patl1	81	55.556	ENSDORG00000000237	Patl1	94	55.556	Dipodomys_ordii
ENSSMAG00000009482	patl1	51	35.160	ENSEASG00005017984	PATL2	73	36.186	Equus_asinus_asinus
ENSSMAG00000009482	patl1	81	53.086	ENSEASG00005007963	PATL1	92	61.667	Equus_asinus_asinus
ENSSMAG00000009482	patl1	81	53.086	ENSECAG00000011411	PATL1	92	61.667	Equus_caballus
ENSSMAG00000009482	patl1	51	35.682	ENSECAG00000013462	PATL2	73	36.740	Equus_caballus
ENSSMAG00000009482	patl1	100	72.944	ENSELUG00000024249	patl1	100	72.912	Esox_lucius
ENSSMAG00000009482	patl1	51	37.415	ENSFCAG00000027170	PATL2	75	38.164	Felis_catus
ENSSMAG00000009482	patl1	81	53.086	ENSFCAG00000015573	PATL1	92	61.667	Felis_catus
ENSSMAG00000009482	patl1	58	34.861	ENSFALG00000009768	PATL2	55	37.468	Ficedula_albicollis
ENSSMAG00000009482	patl1	81	53.247	ENSFALG00000012150	PATL1	92	61.017	Ficedula_albicollis
ENSSMAG00000009482	patl1	80	53.425	ENSFDAG00000016128	PATL1	91	61.538	Fukomys_damarensis
ENSSMAG00000009482	patl1	99	81.598	ENSFHEG00000017790	patl1	100	80.145	Fundulus_heteroclitus
ENSSMAG00000009482	patl1	53	37.179	ENSGALG00000002167	PATL2	50	39.356	Gallus_gallus
ENSSMAG00000009482	patl1	99	50.077	ENSGALG00000042641	PATL1	92	66.129	Gallus_gallus
ENSSMAG00000009482	patl1	100	81.731	ENSGAFG00000006508	patl1	100	79.663	Gambusia_affinis
ENSSMAG00000009482	patl1	81	87.719	ENSGACG00000016448	patl1	99	72.929	Gasterosteus_aculeatus
ENSSMAG00000009482	patl1	90	50.791	ENSGAGG00000004461	PATL1	99	48.636	Gopherus_agassizii
ENSSMAG00000009482	patl1	51	36.854	ENSGGOG00000025923	PATL2	73	38.257	Gorilla_gorilla
ENSSMAG00000009482	patl1	81	54.321	ENSGGOG00000004335	PATL1	95	54.321	Gorilla_gorilla
ENSSMAG00000009482	patl1	100	84.976	ENSHBUG00000005365	patl1	100	84.856	Haplochromis_burtoni
ENSSMAG00000009482	patl1	81	55.556	ENSHGLG00000018173	PATL1	92	63.333	Heterocephalus_glaber_female
ENSSMAG00000009482	patl1	80	50.229	ENSHGLG00100003453	PATL1	92	61.364	Heterocephalus_glaber_male
ENSSMAG00000009482	patl1	100	80.312	ENSHCOG00000001898	patl1	100	77.911	Hippocampus_comes
ENSSMAG00000009482	patl1	51	37.731	ENSIPUG00000020692	patl2	56	37.750	Ictalurus_punctatus
ENSSMAG00000009482	patl1	80	55.714	ENSSTOG00000013764	PATL1	94	55.714	Ictidomys_tridecemlineatus
ENSSMAG00000009482	patl1	51	35.955	ENSSTOG00000033848	PATL2	74	37.650	Ictidomys_tridecemlineatus
ENSSMAG00000009482	patl1	80	54.795	ENSJJAG00000010135	Patl1	94	54.795	Jaculus_jaculus
ENSSMAG00000009482	patl1	100	86.315	ENSKMAG00000020848	patl1	100	84.274	Kryptolebias_marmoratus
ENSSMAG00000009482	patl1	100	89.581	ENSLBEG00000023617	patl1	100	88.862	Labrus_bergylta
ENSSMAG00000009482	patl1	50	36.195	ENSLBEG00000022344	patl2	53	36.364	Labrus_bergylta
ENSSMAG00000009482	patl1	77	54.930	ENSLACG00000004640	PATL1	89	68.085	Latimeria_chalumnae
ENSSMAG00000009482	patl1	52	35.010	ENSLACG00000005291	-	53	36.675	Latimeria_chalumnae
ENSSMAG00000009482	patl1	92	68.837	ENSLOCG00000000717	patl1	98	68.809	Lepisosteus_oculatus
ENSSMAG00000009482	patl1	81	54.321	ENSLAFG00000015161	PATL1	94	54.321	Loxodonta_africana
ENSSMAG00000009482	patl1	81	54.321	ENSMFAG00000040851	PATL1	94	54.321	Macaca_fascicularis
ENSSMAG00000009482	patl1	81	54.321	ENSMMUG00000017287	PATL1	94	54.321	Macaca_mulatta
ENSSMAG00000009482	patl1	81	54.321	ENSMNEG00000038692	PATL1	94	54.321	Macaca_nemestrina
ENSSMAG00000009482	patl1	51	37.079	ENSMNEG00000034510	PATL2	74	38.499	Macaca_nemestrina
ENSSMAG00000009482	patl1	51	37.079	ENSMLEG00000042248	PATL2	73	38.499	Mandrillus_leucophaeus
ENSSMAG00000009482	patl1	81	54.321	ENSMLEG00000030044	PATL1	94	54.321	Mandrillus_leucophaeus
ENSSMAG00000009482	patl1	100	87.770	ENSMAMG00000003950	patl1	100	86.091	Mastacembelus_armatus
ENSSMAG00000009482	patl1	100	84.976	ENSMZEG00005013404	patl1	100	84.856	Maylandia_zebra
ENSSMAG00000009482	patl1	87	48.764	ENSMGAG00000003406	PATL1	99	46.766	Meleagris_gallopavo
ENSSMAG00000009482	patl1	56	34.608	ENSMAUG00000001008	Patl2	77	36.829	Mesocricetus_auratus
ENSSMAG00000009482	patl1	72	44.582	ENSMAUG00000012059	Patl1	85	44.044	Mesocricetus_auratus
ENSSMAG00000009482	patl1	81	54.321	ENSMICG00000004172	PATL1	92	54.321	Microcebus_murinus
ENSSMAG00000009482	patl1	81	53.086	ENSMOCG00000010087	Patl1	91	61.667	Microtus_ochrogaster
ENSSMAG00000009482	patl1	79	84.669	ENSMMOG00000013711	patl1	98	84.522	Mola_mola
ENSSMAG00000009482	patl1	82	54.444	ENSMODG00000020201	PATL1	92	66.667	Monodelphis_domestica
ENSSMAG00000009482	patl1	51	37.143	ENSMODG00000017690	PATL2	73	37.002	Monodelphis_domestica
ENSSMAG00000009482	patl1	95	75.318	ENSMALG00000018706	patl1	95	94.150	Monopterus_albus
ENSSMAG00000009482	patl1	81	55.556	MGP_CAROLIEiJ_G0022739	Patl1	94	55.556	Mus_caroli
ENSSMAG00000009482	patl1	81	55.556	ENSMUSG00000046139	Patl1	94	55.556	Mus_musculus
ENSSMAG00000009482	patl1	81	55.556	MGP_PahariEiJ_G0014233	Patl1	94	55.556	Mus_pahari
ENSSMAG00000009482	patl1	81	55.556	MGP_SPRETEiJ_G0023652	Patl1	94	55.556	Mus_spretus
ENSSMAG00000009482	patl1	81	54.321	ENSMPUG00000014607	PATL1	94	54.321	Mustela_putorius_furo
ENSSMAG00000009482	patl1	82	50.866	ENSMLUG00000011169	PATL1	91	61.667	Myotis_lucifugus
ENSSMAG00000009482	patl1	81	53.846	ENSNGAG00000003682	Patl1	91	61.667	Nannospalax_galili
ENSSMAG00000009482	patl1	71	80.203	ENSNBRG00000015372	patl1	75	92.121	Neolamprologus_brichardi
ENSSMAG00000009482	patl1	51	36.854	ENSNLEG00000005673	PATL2	74	38.257	Nomascus_leucogenys
ENSSMAG00000009482	patl1	81	54.321	ENSNLEG00000013081	PATL1	95	54.321	Nomascus_leucogenys
ENSSMAG00000009482	patl1	57	56.410	ENSMEUG00000009391	PATL1	73	56.051	Notamacropus_eugenii
ENSSMAG00000009482	patl1	60	54.805	ENSOPRG00000007963	PATL1	75	55.707	Ochotona_princeps
ENSSMAG00000009482	patl1	50	46.479	ENSODEG00000001792	PATL1	70	52.174	Octodon_degus
ENSSMAG00000009482	patl1	100	84.477	ENSONIG00000004170	patl1	100	85.096	Oreochromis_niloticus
ENSSMAG00000009482	patl1	54	35.181	ENSOANG00000001538	-	85	37.143	Ornithorhynchus_anatinus
ENSSMAG00000009482	patl1	52	34.607	ENSOCUG00000006339	PATL2	77	36.496	Oryctolagus_cuniculus
ENSSMAG00000009482	patl1	81	53.086	ENSOCUG00000002156	PATL1	92	61.667	Oryctolagus_cuniculus
ENSSMAG00000009482	patl1	72	80.298	ENSORLG00015022240	patl1	77	79.934	Oryzias_latipes_hsok
ENSSMAG00000009482	patl1	51	36.219	ENSOGAG00000004709	PATL2	74	36.946	Otolemur_garnettii
ENSSMAG00000009482	patl1	81	54.321	ENSOGAG00000004351	PATL1	94	54.321	Otolemur_garnettii
ENSSMAG00000009482	patl1	50	36.384	ENSOARG00000003762	PATL2	74	37.101	Ovis_aries
ENSSMAG00000009482	patl1	80	53.425	ENSOARG00000012005	PATL1	91	50.000	Ovis_aries
ENSSMAG00000009482	patl1	51	36.854	ENSPPAG00000007221	PATL2	73	38.406	Pan_paniscus
ENSSMAG00000009482	patl1	81	54.321	ENSPPAG00000034275	PATL1	94	54.321	Pan_paniscus
ENSSMAG00000009482	patl1	80	52.055	ENSPPRG00000020639	PATL1	91	61.538	Panthera_pardus
ENSSMAG00000009482	patl1	51	36.735	ENSPPRG00000004279	PATL2	75	37.530	Panthera_pardus
ENSSMAG00000009482	patl1	81	53.086	ENSPTIG00000019298	PATL1	92	61.667	Panthera_tigris_altaica
ENSSMAG00000009482	patl1	51	36.652	ENSPTIG00000018964	PATL2	75	37.440	Panthera_tigris_altaica
ENSSMAG00000009482	patl1	51	36.854	ENSPTRG00000041536	PATL2	73	38.257	Pan_troglodytes
ENSSMAG00000009482	patl1	81	54.321	ENSPTRG00000003697	PATL1	95	54.321	Pan_troglodytes
ENSSMAG00000009482	patl1	51	37.079	ENSPANG00000018026	PATL2	74	38.499	Papio_anubis
ENSSMAG00000009482	patl1	81	54.321	ENSPANG00000035620	PATL1	94	54.321	Papio_anubis
ENSSMAG00000009482	patl1	100	71.928	ENSPKIG00000016224	patl1	100	71.325	Paramormyrops_kingsleyae
ENSSMAG00000009482	patl1	94	51.551	ENSPSIG00000016206	PATL1	95	49.238	Pelodiscus_sinensis
ENSSMAG00000009482	patl1	100	79.157	ENSPMGG00000002644	patl1	100	77.644	Periophthalmus_magnuspinnatus
ENSSMAG00000009482	patl1	53	33.475	ENSPMGG00000014550	patl2	62	35.101	Periophthalmus_magnuspinnatus
ENSSMAG00000009482	patl1	81	53.086	ENSPEMG00000014215	Patl1	91	61.667	Peromyscus_maniculatus_bairdii
ENSSMAG00000009482	patl1	82	55.556	ENSPCIG00000010852	PATL1	92	66.667	Phascolarctos_cinereus
ENSSMAG00000009482	patl1	50	36.136	ENSPCIG00000018256	PATL2	80	36.341	Phascolarctos_cinereus
ENSSMAG00000009482	patl1	100	79.567	ENSPFOG00000007768	patl1	100	78.637	Poecilia_formosa
ENSSMAG00000009482	patl1	60	34.971	ENSPFOG00000007305	patl2	54	36.456	Poecilia_formosa
ENSSMAG00000009482	patl1	60	34.971	ENSPLAG00000020713	patl2	54	36.456	Poecilia_latipinna
ENSSMAG00000009482	patl1	100	81.250	ENSPLAG00000018465	patl1	100	79.567	Poecilia_latipinna
ENSSMAG00000009482	patl1	60	35.029	ENSPMEG00000018942	patl2	54	36.456	Poecilia_mexicana
ENSSMAG00000009482	patl1	100	81.611	ENSPMEG00000006555	patl1	100	79.567	Poecilia_mexicana
ENSSMAG00000009482	patl1	90	78.313	ENSPREG00000003874	patl1	95	76.037	Poecilia_reticulata
ENSSMAG00000009482	patl1	81	54.321	ENSPPYG00000003230	PATL1	94	54.321	Pongo_abelii
ENSSMAG00000009482	patl1	81	54.321	ENSPCOG00000020770	PATL1	94	54.321	Propithecus_coquereli
ENSSMAG00000009482	patl1	51	38.137	ENSPCOG00000000295	PATL2	99	40.000	Propithecus_coquereli
ENSSMAG00000009482	patl1	72	48.318	ENSPVAG00000015239	PATL1	99	46.708	Pteropus_vampyrus
ENSSMAG00000009482	patl1	86	94.720	ENSPNYG00000018936	patl1	100	94.737	Pundamilia_nyererei
ENSSMAG00000009482	patl1	100	74.371	ENSPNAG00000017907	patl1	100	73.798	Pygocentrus_nattereri
ENSSMAG00000009482	patl1	51	37.472	ENSPNAG00000002315	patl2	61	37.383	Pygocentrus_nattereri
ENSSMAG00000009482	patl1	81	55.556	ENSRNOG00000021052	Patl1	94	55.556	Rattus_norvegicus
ENSSMAG00000009482	patl1	81	54.321	ENSRBIG00000032263	PATL1	95	54.321	Rhinopithecus_bieti
ENSSMAG00000009482	patl1	81	54.321	ENSRROG00000032861	PATL1	94	54.321	Rhinopithecus_roxellana
ENSSMAG00000009482	patl1	81	54.321	ENSSBOG00000025195	PATL1	94	54.321	Saimiri_boliviensis_boliviensis
ENSSMAG00000009482	patl1	82	53.333	ENSSHAG00000004309	PATL1	92	65.079	Sarcophilus_harrisii
ENSSMAG00000009482	patl1	100	69.836	ENSSFOG00015009614	patl1	100	71.786	Scleropages_formosus
ENSSMAG00000009482	patl1	100	90.024	ENSSDUG00000005362	patl1	100	88.124	Seriola_dumerili
ENSSMAG00000009482	patl1	100	89.536	ENSSLDG00000019146	patl1	100	87.634	Seriola_lalandi_dorsalis
ENSSMAG00000009482	patl1	56	50.857	ENSSARG00000009600	PATL1	68	49.143	Sorex_araneus
ENSSMAG00000009482	patl1	78	60.494	ENSSPUG00000009453	PATL1	89	68.254	Sphenodon_punctatus
ENSSMAG00000009482	patl1	93	91.974	ENSSPAG00000003187	patl1	99	78.554	Stegastes_partitus
ENSSMAG00000009482	patl1	81	53.086	ENSSSCG00000013124	PATL1	92	61.667	Sus_scrofa
ENSSMAG00000009482	patl1	82	53.247	ENSTGUG00000006222	PATL1	93	64.286	Taeniopygia_guttata
ENSSMAG00000009482	patl1	100	72.608	ENSTRUG00000000709	patl1	100	71.860	Takifugu_rubripes
ENSSMAG00000009482	patl1	73	48.137	ENSTBEG00000000796	PATL1	82	55.769	Tupaia_belangeri
ENSSMAG00000009482	patl1	63	54.286	ENSTTRG00000009389	PATL1	79	55.435	Tursiops_truncatus
ENSSMAG00000009482	patl1	79	60.714	ENSUMAG00000018634	PATL1	94	60.714	Ursus_maritimus
ENSSMAG00000009482	patl1	81	53.086	ENSVVUG00000016668	PATL1	94	53.086	Vulpes_vulpes
ENSSMAG00000009482	patl1	68	84.980	ENSXCOG00000010808	patl1	99	88.889	Xiphophorus_couchianus
ENSSMAG00000009482	patl1	59	34.455	ENSXMAG00000018464	patl2	54	35.949	Xiphophorus_maculatus
ENSSMAG00000009482	patl1	100	80.649	ENSXMAG00000013834	patl1	100	79.302	Xiphophorus_maculatus