EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSMAG00000009978 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Plus strand
Length: 65959 bases
Position: chr11:7739317-7805275
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000016441	ResIII	PF04851.15	4.1e-07	1	1
ENSSMAP00000016371	ResIII	PF04851.15	4.3e-07	1	1
ENSSMAP00000016398	ResIII	PF04851.15	4.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000016605	-	6573	-	ENSSMAP00000016398	1517 (aa)	-	-
ENSSMAT00000016578	-	9525	-	ENSSMAP00000016371	1510 (aa)	-	-
ENSSMAT00000016647	-	8864	-	ENSSMAP00000016441	1481 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000009978's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000009978's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSMAG00000009978	-	95	58.683	ENSSMAG00000020933	rad54l2	95	57.819

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000009978	-	91	58.500	ENSG00000164080	RAD54L2	87	64.199	Homo_sapiens
ENSSMAG00000009978	-	99	82.460	ENSAPOG00000024141	-	99	82.325	Acanthochromis_polyacanthus
ENSSMAG00000009978	-	91	58.053	ENSAMEG00000009326	RAD54L2	91	58.184	Ailuropoda_melanoleuca
ENSSMAG00000009978	-	94	77.666	ENSACIG00000015932	-	100	77.595	Amphilophus_citrinellus
ENSSMAG00000009978	-	85	62.731	ENSACIG00000018079	rad54l2	91	62.291	Amphilophus_citrinellus
ENSSMAG00000009978	-	99	82.550	ENSAOCG00000022380	-	99	82.460	Amphiprion_ocellaris
ENSSMAG00000009978	-	100	83.508	ENSATEG00000006641	-	100	83.442	Anabas_testudineus
ENSSMAG00000009978	-	98	60.268	ENSATEG00000009346	rad54l2	95	60.480	Anabas_testudineus
ENSSMAG00000009978	-	95	60.684	ENSAPLG00000002121	RAD54L2	97	59.931	Anas_platyrhynchos
ENSSMAG00000009978	-	79	66.417	ENSACAG00000015883	RAD54L2	93	64.381	Anolis_carolinensis
ENSSMAG00000009978	-	91	58.071	ENSANAG00000025396	RAD54L2	92	58.375	Aotus_nancymaae
ENSSMAG00000009978	-	100	78.992	ENSACLG00000018296	-	100	79.385	Astatotilapia_calliptera
ENSSMAG00000009978	-	98	59.085	ENSACLG00000019111	rad54l2	93	60.414	Astatotilapia_calliptera
ENSSMAG00000009978	-	94	60.857	ENSAMXG00000013807	rad54l2	97	59.646	Astyanax_mexicanus
ENSSMAG00000009978	-	83	61.825	ENSBTAG00000032253	RAD54L2	85	62.143	Bos_taurus
ENSSMAG00000009978	-	56	45.455	WBGene00007761	rad-26	74	45.794	Caenorhabditis_elegans
ENSSMAG00000009978	-	91	58.429	ENSCJAG00000005575	RAD54L2	92	58.589	Callithrix_jacchus
ENSSMAG00000009978	-	83	62.184	ENSCAFG00000010120	RAD54L2	84	62.500	Canis_familiaris
ENSSMAG00000009978	-	83	62.184	ENSCAFG00020022320	RAD54L2	84	62.500	Canis_lupus_dingo
ENSSMAG00000009978	-	91	57.830	ENSCHIG00000008830	RAD54L2	97	55.586	Capra_hircus
ENSSMAG00000009978	-	91	57.714	ENSTSYG00000013200	RAD54L2	91	57.947	Carlito_syrichta
ENSSMAG00000009978	-	78	66.667	ENSCAPG00000016465	RAD54L2	89	67.884	Cavia_aperea
ENSSMAG00000009978	-	91	58.196	ENSCPOG00000005941	RAD54L2	94	57.173	Cavia_porcellus
ENSSMAG00000009978	-	77	57.821	ENSCCAG00000024465	RAD54L2	81	62.396	Cebus_capucinus
ENSSMAG00000009978	-	91	57.898	ENSCATG00000039891	RAD54L2	92	58.000	Cercocebus_atys
ENSSMAG00000009978	-	91	57.786	ENSCLAG00000008059	RAD54L2	94	56.845	Chinchilla_lanigera
ENSSMAG00000009978	-	91	58.143	ENSCSAG00000014027	RAD54L2	91	58.375	Chlorocebus_sabaeus
ENSSMAG00000009978	-	91	61.665	ENSCPBG00000016624	RAD54L2	97	59.768	Chrysemys_picta_bellii
ENSSMAG00000009978	-	69	49.524	ENSCING00000009208	-	95	49.436	Ciona_intestinalis
ENSSMAG00000009978	-	91	58.339	ENSCANG00000036093	RAD54L2	93	58.571	Colobus_angolensis_palliatus
ENSSMAG00000009978	-	91	58.238	ENSCGRG00000007921	Rad54l2	91	58.304	Cricetulus_griseus_crigri
ENSSMAG00000009978	-	87	79.518	ENSCSEG00000006115	-	100	79.217	Cynoglossus_semilaevis
ENSSMAG00000009978	-	96	57.958	ENSCSEG00000001740	rad54l2	93	59.008	Cynoglossus_semilaevis
ENSSMAG00000009978	-	95	60.014	ENSCVAG00000017887	rad54l2	93	59.833	Cyprinodon_variegatus
ENSSMAG00000009978	-	98	76.057	ENSCVAG00000005376	-	98	76.366	Cyprinodon_variegatus
ENSSMAG00000009978	-	94	62.960	ENSDARG00000063031	rad54l2	97	63.489	Danio_rerio
ENSSMAG00000009978	-	91	58.053	ENSDNOG00000017359	RAD54L2	94	58.357	Dasypus_novemcinctus
ENSSMAG00000009978	-	76	68.059	ENSDORG00000000651	Rad54l2	83	67.146	Dipodomys_ordii
ENSSMAG00000009978	-	59	58.491	FBgn0034976	CG4049	63	48.425	Drosophila_melanogaster
ENSSMAG00000009978	-	91	57.690	ENSETEG00000013290	RAD54L2	98	58.141	Echinops_telfairi
ENSSMAG00000009978	-	70	57.299	ENSEBUG00000001591	rad54l2	74	60.246	Eptatretus_burgeri
ENSSMAG00000009978	-	91	58.071	ENSEASG00005012868	RAD54L2	91	58.375	Equus_asinus_asinus
ENSSMAG00000009978	-	91	57.929	ENSECAG00000014759	RAD54L2	91	58.375	Equus_caballus
ENSSMAG00000009978	-	79	65.858	ENSEEUG00000001759	RAD54L2	84	65.428	Erinaceus_europaeus
ENSSMAG00000009978	-	96	68.081	ENSELUG00000011246	RAD54L2	96	67.659	Esox_lucius
ENSSMAG00000009978	-	91	58.125	ENSFCAG00000018563	RAD54L2	91	58.298	Felis_catus
ENSSMAG00000009978	-	81	66.230	ENSFALG00000008938	RAD54L2	91	66.232	Ficedula_albicollis
ENSSMAG00000009978	-	91	58.000	ENSFDAG00000017084	RAD54L2	94	56.984	Fukomys_damarensis
ENSSMAG00000009978	-	95	60.684	ENSFHEG00000023241	rad54l2	95	61.259	Fundulus_heteroclitus
ENSSMAG00000009978	-	99	75.947	ENSFHEG00000017845	-	98	77.028	Fundulus_heteroclitus
ENSSMAG00000009978	-	90	61.312	ENSGMOG00000010674	rad54l2	97	60.933	Gadus_morhua
ENSSMAG00000009978	-	95	60.279	ENSGALG00000003243	RAD54L2	91	61.665	Gallus_gallus
ENSSMAG00000009978	-	99	75.450	ENSGAFG00000002396	-	99	76.109	Gambusia_affinis
ENSSMAG00000009978	-	94	60.549	ENSGAFG00000021535	rad54l2	97	57.870	Gambusia_affinis
ENSSMAG00000009978	-	94	59.830	ENSGACG00000001558	rad54l2	96	60.544	Gasterosteus_aculeatus
ENSSMAG00000009978	-	87	78.790	ENSGACG00000005642	-	100	78.254	Gasterosteus_aculeatus
ENSSMAG00000009978	-	91	61.349	ENSGAGG00000020971	RAD54L2	95	61.288	Gopherus_agassizii
ENSSMAG00000009978	-	91	58.429	ENSGGOG00000010032	RAD54L2	92	58.660	Gorilla_gorilla
ENSSMAG00000009978	-	98	59.350	ENSHBUG00000012480	rad54l2	93	60.165	Haplochromis_burtoni
ENSSMAG00000009978	-	100	79.123	ENSHBUG00000018930	-	100	79.581	Haplochromis_burtoni
ENSSMAG00000009978	-	91	58.071	ENSHGLG00000012116	RAD54L2	94	57.054	Heterocephalus_glaber_female
ENSSMAG00000009978	-	91	58.071	ENSHGLG00100007205	RAD54L2	94	57.054	Heterocephalus_glaber_male
ENSSMAG00000009978	-	99	72.690	ENSHCOG00000006741	-	97	72.924	Hippocampus_comes
ENSSMAG00000009978	-	98	58.589	ENSHCOG00000007601	rad54l2	92	58.958	Hippocampus_comes
ENSSMAG00000009978	-	95	58.647	ENSIPUG00000024973	-	96	59.420	Ictalurus_punctatus
ENSSMAG00000009978	-	94	59.485	ENSIPUG00000019664	rad54l2	93	59.450	Ictalurus_punctatus
ENSSMAG00000009978	-	85	60.766	ENSSTOG00000010014	RAD54L2	86	60.949	Ictidomys_tridecemlineatus
ENSSMAG00000009978	-	93	57.123	ENSJJAG00000014332	Rad54l2	94	57.660	Jaculus_jaculus
ENSSMAG00000009978	-	97	58.691	ENSKMAG00000001976	rad54l2	96	59.113	Kryptolebias_marmoratus
ENSSMAG00000009978	-	98	77.816	ENSKMAG00000002931	-	98	78.020	Kryptolebias_marmoratus
ENSSMAG00000009978	-	94	60.099	ENSLBEG00000018779	rad54l2	94	59.660	Labrus_bergylta
ENSSMAG00000009978	-	87	80.945	ENSLBEG00000008534	-	98	81.768	Labrus_bergylta
ENSSMAG00000009978	-	92	58.113	ENSLACG00000016004	RAD54L2	96	56.671	Latimeria_chalumnae
ENSSMAG00000009978	-	72	71.534	ENSLOCG00000014222	rad54l2	100	70.983	Lepisosteus_oculatus
ENSSMAG00000009978	-	83	62.173	ENSLAFG00000005966	RAD54L2	84	62.351	Loxodonta_africana
ENSSMAG00000009978	-	91	57.981	ENSMFAG00000041836	RAD54L2	92	58.304	Macaca_fascicularis
ENSSMAG00000009978	-	91	58.214	ENSMMUG00000012002	RAD54L2	91	58.500	Macaca_mulatta
ENSSMAG00000009978	-	91	58.071	ENSMNEG00000035063	RAD54L2	93	58.304	Macaca_nemestrina
ENSSMAG00000009978	-	91	58.071	ENSMLEG00000034668	RAD54L2	93	58.357	Mandrillus_leucophaeus
ENSSMAG00000009978	-	100	80.906	ENSMAMG00000015321	-	100	81.418	Mastacembelus_armatus
ENSSMAG00000009978	-	90	69.397	ENSMAMG00000023761	rad54l2	95	66.695	Mastacembelus_armatus
ENSSMAG00000009978	-	98	59.151	ENSMZEG00005012584	rad54l2	95	59.790	Maylandia_zebra
ENSSMAG00000009978	-	99	79.491	ENSMZEG00005021308	-	99	80.067	Maylandia_zebra
ENSSMAG00000009978	-	95	60.070	ENSMGAG00000002911	RAD54L2	91	61.500	Meleagris_gallopavo
ENSSMAG00000009978	-	71	66.636	ENSMAUG00000011651	Rad54l2	94	66.760	Mesocricetus_auratus
ENSSMAG00000009978	-	95	56.926	ENSMICG00000002777	RAD54L2	86	62.431	Microcebus_murinus
ENSSMAG00000009978	-	94	57.103	ENSMOCG00000022448	Rad54l2	96	56.879	Microtus_ochrogaster
ENSSMAG00000009978	-	94	59.085	ENSMMOG00000021709	rad54l2	92	60.309	Mola_mola
ENSSMAG00000009978	-	94	78.970	ENSMMOG00000016901	-	99	78.710	Mola_mola
ENSSMAG00000009978	-	91	61.716	ENSMODG00000011850	RAD54L2	96	61.411	Monodelphis_domestica
ENSSMAG00000009978	-	87	79.662	ENSMALG00000015084	-	96	83.423	Monopterus_albus
ENSSMAG00000009978	-	94	56.974	MGP_CAROLIEiJ_G0032634	Rad54l2	94	57.272	Mus_caroli
ENSSMAG00000009978	-	94	56.904	ENSMUSG00000040661	Rad54l2	94	57.203	Mus_musculus
ENSSMAG00000009978	-	94	56.834	MGP_PahariEiJ_G0015502	Rad54l2	94	57.133	Mus_pahari
ENSSMAG00000009978	-	94	56.974	MGP_SPRETEiJ_G0033779	Rad54l2	94	57.203	Mus_spretus
ENSSMAG00000009978	-	93	57.103	ENSMPUG00000011865	RAD54L2	93	57.332	Mustela_putorius_furo
ENSSMAG00000009978	-	91	58.327	ENSMLUG00000004605	RAD54L2	91	58.719	Myotis_lucifugus
ENSSMAG00000009978	-	94	57.133	ENSNGAG00000015629	Rad54l2	94	57.431	Nannospalax_galili
ENSSMAG00000009978	-	99	79.463	ENSNBRG00000022847	-	99	80.163	Neolamprologus_brichardi
ENSSMAG00000009978	-	95	59.733	ENSNBRG00000001937	rad54l2	89	63.150	Neolamprologus_brichardi
ENSSMAG00000009978	-	91	58.429	ENSNLEG00000007038	RAD54L2	93	58.660	Nomascus_leucogenys
ENSSMAG00000009978	-	90	73.309	ENSMEUG00000009835	RAD54L2	92	73.077	Notamacropus_eugenii
ENSSMAG00000009978	-	91	57.929	ENSODEG00000018266	RAD54L2	94	56.984	Octodon_degus
ENSSMAG00000009978	-	96	79.749	ENSONIG00000001663	-	97	79.763	Oreochromis_niloticus
ENSSMAG00000009978	-	98	60.081	ENSONIG00000014468	rad54l2	95	59.792	Oreochromis_niloticus
ENSSMAG00000009978	-	95	60.870	ENSOANG00000012793	RAD54L2	94	61.352	Ornithorhynchus_anatinus
ENSSMAG00000009978	-	94	56.935	ENSOCUG00000017577	RAD54L2	94	57.123	Oryctolagus_cuniculus
ENSSMAG00000009978	-	99	73.922	ENSORLG00000002714	-	99	74.376	Oryzias_latipes
ENSSMAG00000009978	-	95	60.576	ENSORLG00000002276	rad54l2	97	58.240	Oryzias_latipes
ENSSMAG00000009978	-	98	59.647	ENSORLG00020003470	rad54l2	98	58.477	Oryzias_latipes_hni
ENSSMAG00000009978	-	99	73.887	ENSORLG00020019256	-	99	74.139	Oryzias_latipes_hni
ENSSMAG00000009978	-	98	59.551	ENSORLG00015021530	rad54l2	97	58.559	Oryzias_latipes_hsok
ENSSMAG00000009978	-	98	73.928	ENSORLG00015013408	-	98	74.031	Oryzias_latipes_hsok
ENSSMAG00000009978	-	98	59.146	ENSOMEG00000005597	rad54l2	96	58.428	Oryzias_melastigma
ENSSMAG00000009978	-	99	72.997	ENSOMEG00000008216	-	99	73.148	Oryzias_melastigma
ENSSMAG00000009978	-	68	64.113	ENSOGAG00000012442	RAD54L2	88	64.120	Otolemur_garnettii
ENSSMAG00000009978	-	91	57.902	ENSOARG00000007264	RAD54L2	91	58.351	Ovis_aries
ENSSMAG00000009978	-	91	58.429	ENSPPAG00000038472	RAD54L2	92	58.660	Pan_paniscus
ENSSMAG00000009978	-	91	58.125	ENSPPRG00000010212	RAD54L2	91	58.298	Panthera_pardus
ENSSMAG00000009978	-	91	58.125	ENSPTIG00000002240	RAD54L2	91	58.298	Panthera_tigris_altaica
ENSSMAG00000009978	-	91	58.429	ENSPTRG00000014974	RAD54L2	92	58.660	Pan_troglodytes
ENSSMAG00000009978	-	91	58.071	ENSPANG00000000857	RAD54L2	92	58.357	Papio_anubis
ENSSMAG00000009978	-	99	64.507	ENSPKIG00000001065	rad54l2	97	66.060	Paramormyrops_kingsleyae
ENSSMAG00000009978	-	68	70.968	ENSPSIG00000014346	RAD54L2	95	68.489	Pelodiscus_sinensis
ENSSMAG00000009978	-	95	68.073	ENSPMGG00000000641	-	97	68.272	Periophthalmus_magnuspinnatus
ENSSMAG00000009978	-	85	61.133	ENSPMGG00000002208	rad54l2	96	62.366	Periophthalmus_magnuspinnatus
ENSSMAG00000009978	-	94	57.572	ENSPEMG00000012051	Rad54l2	94	57.451	Peromyscus_maniculatus_bairdii
ENSSMAG00000009978	-	90	60.569	ENSPCIG00000018143	RAD54L2	95	61.336	Phascolarctos_cinereus
ENSSMAG00000009978	-	94	60.547	ENSPFOG00000018644	rad54l2	97	57.746	Poecilia_formosa
ENSSMAG00000009978	-	99	76.482	ENSPFOG00000000197	-	99	76.673	Poecilia_formosa
ENSSMAG00000009978	-	100	75.608	ENSPLAG00000013908	-	100	75.674	Poecilia_latipinna
ENSSMAG00000009978	-	98	57.560	ENSPLAG00000006015	rad54l2	98	57.846	Poecilia_latipinna
ENSSMAG00000009978	-	94	60.687	ENSPMEG00000021535	rad54l2	97	58.009	Poecilia_mexicana
ENSSMAG00000009978	-	100	75.461	ENSPMEG00000009878	-	100	75.526	Poecilia_mexicana
ENSSMAG00000009978	-	98	76.129	ENSPREG00000013377	RAD54L2	98	76.503	Poecilia_reticulata
ENSSMAG00000009978	-	94	59.377	ENSPREG00000008628	rad54l2	100	59.016	Poecilia_reticulata
ENSSMAG00000009978	-	91	58.500	ENSPPYG00000013831	RAD54L2	95	58.731	Pongo_abelii
ENSSMAG00000009978	-	74	60.853	ENSPCAG00000011952	RAD54L2	80	60.853	Procavia_capensis
ENSSMAG00000009978	-	97	55.914	ENSPCOG00000015983	RAD54L2	86	61.120	Propithecus_coquereli
ENSSMAG00000009978	-	94	59.603	ENSPNYG00000020693	rad54l2	88	63.818	Pundamilia_nyererei
ENSSMAG00000009978	-	99	79.732	ENSPNYG00000011435	-	99	80.435	Pundamilia_nyererei
ENSSMAG00000009978	-	95	61.783	ENSPNAG00000006451	rad54l2	97	61.288	Pygocentrus_nattereri
ENSSMAG00000009978	-	99	63.788	ENSPNAG00000011583	-	97	65.136	Pygocentrus_nattereri
ENSSMAG00000009978	-	94	53.990	ENSRNOG00000013570	Rad54l2	94	54.294	Rattus_norvegicus
ENSSMAG00000009978	-	69	65.143	ENSRNOG00000049489	LOC102552166	94	65.363	Rattus_norvegicus
ENSSMAG00000009978	-	91	58.339	ENSRBIG00000032434	RAD54L2	89	63.802	Rhinopithecus_bieti
ENSSMAG00000009978	-	91	58.268	ENSRROG00000042309	RAD54L2	93	58.500	Rhinopithecus_roxellana
ENSSMAG00000009978	-	91	58.286	ENSSBOG00000002139	RAD54L2	91	58.589	Saimiri_boliviensis_boliviensis
ENSSMAG00000009978	-	95	59.672	ENSSHAG00000008604	RAD54L2	93	60.651	Sarcophilus_harrisii
ENSSMAG00000009978	-	99	66.000	ENSSFOG00015019014	rad54l2	97	67.686	Scleropages_formosus
ENSSMAG00000009978	-	98	58.655	ENSSDUG00000014268	rad54l2	90	63.092	Seriola_dumerili
ENSSMAG00000009978	-	99	84.305	ENSSDUG00000016711	-	100	85.069	Seriola_dumerili
ENSSMAG00000009978	-	94	60.408	ENSSLDG00000023959	rad54l2	97	61.387	Seriola_lalandi_dorsalis
ENSSMAG00000009978	-	96	81.862	ENSSLDG00000023388	-	100	82.847	Seriola_lalandi_dorsalis
ENSSMAG00000009978	-	93	82.556	ENSSPAG00000006371	-	100	82.403	Stegastes_partitus
ENSSMAG00000009978	-	98	58.976	ENSSPAG00000016532	rad54l2	94	60.071	Stegastes_partitus
ENSSMAG00000009978	-	95	57.005	ENSSSCG00000011425	RAD54L2	84	62.451	Sus_scrofa
ENSSMAG00000009978	-	95	60.305	ENSTGUG00000004888	RAD54L2	91	61.566	Taeniopygia_guttata
ENSSMAG00000009978	-	99	75.237	ENSTRUG00000011066	-	99	75.458	Takifugu_rubripes
ENSSMAG00000009978	-	94	59.722	ENSTRUG00000013962	rad54l2	92	59.958	Takifugu_rubripes
ENSSMAG00000009978	-	75	76.814	ENSTNIG00000006049	-	100	76.726	Tetraodon_nigroviridis
ENSSMAG00000009978	-	74	69.231	ENSTNIG00000014694	rad54l2	99	67.068	Tetraodon_nigroviridis
ENSSMAG00000009978	-	86	57.515	ENSTBEG00000003377	RAD54L2	96	57.842	Tupaia_belangeri
ENSSMAG00000009978	-	91	58.069	ENSUAMG00000020891	RAD54L2	92	58.113	Ursus_americanus
ENSSMAG00000009978	-	91	57.532	ENSUMAG00000021678	RAD54L2	91	57.838	Ursus_maritimus
ENSSMAG00000009978	-	83	62.184	ENSVVUG00000026874	RAD54L2	87	62.500	Vulpes_vulpes
ENSSMAG00000009978	-	95	59.008	ENSXETG00000000070	rad54l2	87	63.312	Xenopus_tropicalis
ENSSMAG00000009978	-	96	72.575	ENSXCOG00000002848	-	99	72.517	Xiphophorus_couchianus
ENSSMAG00000009978	-	96	55.918	ENSXCOG00000004961	rad54l2	89	58.953	Xiphophorus_couchianus
ENSSMAG00000009978	-	94	59.817	ENSXMAG00000017182	rad54l2	100	59.532	Xiphophorus_maculatus
ENSSMAG00000009978	-	100	75.774	ENSXMAG00000019370	-	100	75.971	Xiphophorus_maculatus