EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSMAG00000010427 (Gene tree)
Gene ID: -
Gene Symbol: SMARCAL1
Alias: HARP|HHARP
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Plus strand
Length: 9522 bases
Position: chr14:10565081-10574602
Accession: 11102
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000016998	ResIII	PF04851.15	6.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000017208	SMARCAL1-201	3194	-	ENSSMAP00000016998	924 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000010427's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000010427's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000010427	SMARCAL1	99	49.689	ENSG00000138375	SMARCAL1	99	65.217	Homo_sapiens
ENSSMAG00000010427	SMARCAL1	99	79.676	ENSAPOG00000020156	SMARCAL1	99	79.676	Acanthochromis_polyacanthus
ENSSMAG00000010427	SMARCAL1	93	83.762	ENSACIG00000001500	smarcal1	97	83.762	Amphilophus_citrinellus
ENSSMAG00000010427	SMARCAL1	99	79.934	ENSAOCG00000014266	SMARCAL1	100	79.605	Amphiprion_ocellaris
ENSSMAG00000010427	SMARCAL1	99	79.892	ENSAPEG00000015861	SMARCAL1	99	79.892	Amphiprion_percula
ENSSMAG00000010427	SMARCAL1	100	79.654	ENSATEG00000020624	SMARCAL1	100	79.654	Anabas_testudineus
ENSSMAG00000010427	SMARCAL1	77	61.818	ENSAPLG00000009864	SMARCAL1	99	51.151	Anas_platyrhynchos
ENSSMAG00000010427	SMARCAL1	81	60.643	ENSACAG00000004612	SMARCAL1	76	60.643	Anolis_carolinensis
ENSSMAG00000010427	SMARCAL1	98	79.341	ENSACLG00000015990	SMARCAL1	99	79.626	Astatotilapia_calliptera
ENSSMAG00000010427	SMARCAL1	100	64.630	ENSAMXG00000003350	smarcal1	99	64.630	Astyanax_mexicanus
ENSSMAG00000010427	SMARCAL1	79	62.177	ENSCPBG00000013599	SMARCAL1	74	62.177	Chrysemys_picta_bellii
ENSSMAG00000010427	SMARCAL1	69	48.287	ENSCING00000009308	-	100	48.442	Ciona_intestinalis
ENSSMAG00000010427	SMARCAL1	98	74.531	ENSCSEG00000010785	SMARCAL1	99	74.531	Cynoglossus_semilaevis
ENSSMAG00000010427	SMARCAL1	100	70.892	ENSCVAG00000018780	SMARCAL1	100	70.892	Cyprinodon_variegatus
ENSSMAG00000010427	SMARCAL1	57	55.619	ENSEBUG00000011906	SMARCAL1	99	46.123	Eptatretus_burgeri
ENSSMAG00000010427	SMARCAL1	100	73.298	ENSELUG00000010440	-	100	69.938	Esox_lucius
ENSSMAG00000010427	SMARCAL1	96	51.899	ENSFALG00000003981	SMARCAL1	97	51.582	Ficedula_albicollis
ENSSMAG00000010427	SMARCAL1	100	71.935	ENSFHEG00000008380	SMARCAL1	100	71.935	Fundulus_heteroclitus
ENSSMAG00000010427	SMARCAL1	59	74.704	ENSGMOG00000010034	smarcal1	93	74.704	Gadus_morhua
ENSSMAG00000010427	SMARCAL1	96	51.852	ENSGALG00000011475	RPL37A	96	52.008	Gallus_gallus
ENSSMAG00000010427	SMARCAL1	83	82.804	ENSGACG00000006073	SMARCAL1	100	86.592	Gasterosteus_aculeatus
ENSSMAG00000010427	SMARCAL1	72	64.962	ENSGAGG00000015660	SMARCAL1	72	64.962	Gopherus_agassizii
ENSSMAG00000010427	SMARCAL1	98	78.791	ENSHBUG00000002973	smarcal1	99	79.075	Haplochromis_burtoni
ENSSMAG00000010427	SMARCAL1	95	70.668	ENSHCOG00000017921	smarcal1	98	70.668	Hippocampus_comes
ENSSMAG00000010427	SMARCAL1	97	73.855	ENSKMAG00000012023	SMARCAL1	99	73.855	Kryptolebias_marmoratus
ENSSMAG00000010427	SMARCAL1	91	78.023	ENSLBEG00000003493	smarcal1	100	78.023	Labrus_bergylta
ENSSMAG00000010427	SMARCAL1	84	82.568	ENSLBEG00000022915	smarcal1	100	82.568	Labrus_bergylta
ENSSMAG00000010427	SMARCAL1	100	49.949	ENSLACG00000010974	SMARCAL1	99	49.695	Latimeria_chalumnae
ENSSMAG00000010427	SMARCAL1	93	62.372	ENSLOCG00000009637	smarcal1	99	62.329	Lepisosteus_oculatus
ENSSMAG00000010427	SMARCAL1	98	79.162	ENSMAMG00000000828	SMARCAL1	99	79.162	Mastacembelus_armatus
ENSSMAG00000010427	SMARCAL1	98	79.231	ENSMZEG00005007660	SMARCAL1	99	79.515	Maylandia_zebra
ENSSMAG00000010427	SMARCAL1	96	54.081	ENSMGAG00000011658	SMARCAL1	96	54.081	Meleagris_gallopavo
ENSSMAG00000010427	SMARCAL1	93	76.622	ENSMMOG00000003842	smarcal1	94	76.622	Mola_mola
ENSSMAG00000010427	SMARCAL1	100	49.340	ENSMODG00000015544	SMARCAL1	99	49.340	Monodelphis_domestica
ENSSMAG00000010427	SMARCAL1	86	83.491	ENSNBRG00000016273	smarcal1	97	83.491	Neolamprologus_brichardi
ENSSMAG00000010427	SMARCAL1	92	52.413	ENSMEUG00000004395	SMARCAL1	99	52.756	Notamacropus_eugenii
ENSSMAG00000010427	SMARCAL1	98	79.121	ENSONIG00000009036	smarcal1	100	86.735	Oreochromis_niloticus
ENSSMAG00000010427	SMARCAL1	100	70.940	ENSORLG00000016455	SMARCAL1	100	70.940	Oryzias_latipes
ENSSMAG00000010427	SMARCAL1	100	70.789	ENSORLG00020001610	SMARCAL1	100	70.789	Oryzias_latipes_hni
ENSSMAG00000010427	SMARCAL1	100	71.154	ENSORLG00015001865	SMARCAL1	100	71.154	Oryzias_latipes_hsok
ENSSMAG00000010427	SMARCAL1	100	71.490	ENSOMEG00000001845	smarcal1	100	71.490	Oryzias_melastigma
ENSSMAG00000010427	SMARCAL1	100	69.565	ENSPMGG00000019092	SMARCAL1	100	69.883	Periophthalmus_magnuspinnatus
ENSSMAG00000010427	SMARCAL1	78	58.356	ENSPCIG00000022514	SMARCAL1	73	61.094	Phascolarctos_cinereus
ENSSMAG00000010427	SMARCAL1	100	72.443	ENSPFOG00000000560	SMARCAL1	100	72.443	Poecilia_formosa
ENSSMAG00000010427	SMARCAL1	100	72.443	ENSPMEG00000018146	SMARCAL1	100	72.443	Poecilia_mexicana
ENSSMAG00000010427	SMARCAL1	60	84.722	ENSPREG00000009591	SMARCAL1	97	84.722	Poecilia_reticulata
ENSSMAG00000010427	SMARCAL1	100	64.194	ENSPNAG00000014900	smarcal1	95	64.447	Pygocentrus_nattereri
ENSSMAG00000010427	SMARCAL1	99	47.902	ENSSHAG00000013538	SMARCAL1	99	48.472	Sarcophilus_harrisii
ENSSMAG00000010427	SMARCAL1	98	82.908	ENSSDUG00000017470	SMARCAL1	96	82.908	Seriola_dumerili
ENSSMAG00000010427	SMARCAL1	100	82.359	ENSSLDG00000007224	SMARCAL1	100	82.359	Seriola_lalandi_dorsalis
ENSSMAG00000010427	SMARCAL1	79	63.549	ENSSPUG00000015369	SMARCAL1	73	63.549	Sphenodon_punctatus
ENSSMAG00000010427	SMARCAL1	93	86.771	ENSSPAG00000003742	smarcal1	99	86.771	Stegastes_partitus
ENSSMAG00000010427	SMARCAL1	75	57.204	ENSSSCG00000035501	SMARCAL1	76	57.349	Sus_scrofa
ENSSMAG00000010427	SMARCAL1	74	61.640	ENSTGUG00000005079	SMARCAL1	99	61.493	Taeniopygia_guttata
ENSSMAG00000010427	SMARCAL1	98	63.965	ENSTRUG00000010701	SMARCAL1	99	63.746	Takifugu_rubripes
ENSSMAG00000010427	SMARCAL1	99	43.392	ENSTTRG00000009001	SMARCAL1	99	43.288	Tursiops_truncatus
ENSSMAG00000010427	SMARCAL1	99	53.823	ENSXETG00000000465	smarcal1	99	53.823	Xenopus_tropicalis