EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSMAG00000010516 (Gene tree)
Gene ID
-
Gene Symbol
pabpc1l
Alias
fi20g03|wu:fi20g03|zgc:55855
Full Name
poly(A) binding protein%2C cytoplasmic 1-like
Gene Type
protein_coding
Species
Scophthalmus_maximus
Status
putative
Strand
Plus strand
Length
9889 bases
Position
chr11:16407068-16416956
Accession
ZDB-GENE-030131-5836
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSMAP00000017381PABPPF00658.188.4e-2911
ENSSMAP00000017541PABPPF00658.189.7e-2911
ENSSMAP00000017381RRM_5PF13893.69.6e-0912
ENSSMAP00000017381RRM_5PF13893.69.6e-0922
ENSSMAP00000017541RRM_5PF13893.61.5e-0812
ENSSMAP00000017541RRM_5PF13893.61.5e-0822
ENSSMAP00000017381RRM_1PF00076.225.7e-8814
ENSSMAP00000017381RRM_1PF00076.225.7e-8824
ENSSMAP00000017381RRM_1PF00076.225.7e-8834
ENSSMAP00000017381RRM_1PF00076.225.7e-8844
ENSSMAP00000017541RRM_1PF00076.228.9e-8814
ENSSMAP00000017541RRM_1PF00076.228.9e-8824
ENSSMAP00000017541RRM_1PF00076.228.9e-8834
ENSSMAP00000017541RRM_1PF00076.228.9e-8844
ENSSMAP00000017566RRM_1PF00076.222.7e-4112
ENSSMAP00000017566RRM_1PF00076.222.7e-4122
ENSSMAP00000017392RRM_1PF00076.221.2e-2712
ENSSMAP00000017392RRM_1PF00076.221.2e-2722
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSMAT00000017780-678-ENSSMAP00000017566225 (aa)--
ENSSMAT00000017605-420-ENSSMAP00000017392139 (aa)--
ENSSMAT00000017594-1689-ENSSMAP00000017381562 (aa)--
ENSSMAT00000017754-1842-ENSSMAP00000017541613 (aa)--
Gene Model
Click here to download ENSSMAG00000010516's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000010516's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSMAG00000010516pabpc1l5534.884ENSSMAG00000015634celf3b6834.247
ENSSMAG00000010516pabpc1l9135.443ENSSMAG00000010745ELAVL28530.000
ENSSMAG00000010516pabpc1l9885.294ENSSMAG00000010803pabpc1a9869.036
ENSSMAG00000010516pabpc1l7434.247ENSSMAG00000014353-8732.500
ENSSMAG00000010516pabpc1l9030.894ENSSMAG00000012671tial18130.894
ENSSMAG00000010516pabpc1l5334.884ENSSMAG00000002478celf3a6334.884
ENSSMAG00000010516pabpc1l8541.176ENSSMAG00000006837sf3b48039.773
ENSSMAG00000010516pabpc1l6735.789ENSSMAG00000020065-5835.789
ENSSMAG00000010516pabpc1l5335.616ENSSMAG00000008925-5935.616
ENSSMAG00000010516pabpc1l5337.209ENSSMAG00000011707celf5a6036.735
ENSSMAG00000010516pabpc1l5636.047ENSSMAG00000009331celf46432.407
ENSSMAG00000010516pabpc1l7833.913ENSSMAG00000021241ncl5031.250
ENSSMAG00000010516pabpc1l7436.709ENSSMAG00000014763elavl1a8836.709
ENSSMAG00000010516pabpc1l7030.818ENSSMAG00000020230-7130.818
ENSSMAG00000010516pabpc1l5331.126ENSSMAG00000010246-6931.126
ENSSMAG00000010516pabpc1l9234.146ENSSMAG00000004671elavl36034.146
ENSSMAG00000010516pabpc1l9883.824ENSSMAG00000006869pabpc1b9869.352
ENSSMAG00000010516pabpc1l5437.209ENSSMAG00000008575-6035.789
ENSSMAG00000010516pabpc1l7030.994ENSSMAG00000011347tia1l6830.994
ENSSMAG00000010516pabpc1l9232.759ENSSMAG00000006881elavl48130.263
ENSSMAG00000010516pabpc1l9880.882ENSSMAG00000009007pabpc49867.416
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSMAG00000010516pabpc1l9887.597ENSG00000101104PABPC1L9887.597Homo_sapiens
ENSSMAG00000010516pabpc1l9895.349ENSAPOG00000010842pabpc1l9982.391Acanthochromis_polyacanthus
ENSSMAG00000010516pabpc1l9387.597ENSAMEG00000004099PABPC1L9964.297Ailuropoda_melanoleuca
ENSSMAG00000010516pabpc1l9898.450ENSACIG00000021004-10091.211Amphilophus_citrinellus
ENSSMAG00000010516pabpc1l9896.124ENSAOCG00000006167-10084.026Amphiprion_ocellaris
ENSSMAG00000010516pabpc1l9896.154ENSAPEG00000010558-9296.124Amphiprion_percula
ENSSMAG00000010516pabpc1l9898.450ENSATEG00000007428pabpc1l10090.080Anabas_testudineus
ENSSMAG00000010516pabpc1l9485.827ENSAPLG00000008415PABPC1L9969.157Anas_platyrhynchos
ENSSMAG00000010516pabpc1l9888.235ENSACAG00000011841PABPC1L9972.655Anolis_carolinensis
ENSSMAG00000010516pabpc1l9386.822ENSANAG00000026826PABPC1L9967.250Aotus_nancymaae
ENSSMAG00000010516pabpc1l9898.450ENSACLG00000024791pabpc1l10088.179Astatotilapia_calliptera
ENSSMAG00000010516pabpc1l9993.564ENSAMXG00000013552pabpc1l10079.585Astyanax_mexicanus
ENSSMAG00000010516pabpc1l9388.372ENSBTAG00000055300-10087.500Bos_taurus
ENSSMAG00000010516pabpc1l7274.074ENSBTAG00000016849PABPC1L8960.410Bos_taurus
ENSSMAG00000010516pabpc1l9874.820ENSCJAG00000038506-10078.736Callithrix_jacchus
ENSSMAG00000010516pabpc1l9886.822ENSCJAG00000017628PABPC1L9967.409Callithrix_jacchus
ENSSMAG00000010516pabpc1l9387.597ENSCAFG00000009573PABPC1L10063.385Canis_familiaris
ENSSMAG00000010516pabpc1l9387.597ENSCAFG00020013828PABPC1L9967.145Canis_lupus_dingo
ENSSMAG00000010516pabpc1l9888.372ENSCHIG00000025759PABPC1L9167.430Capra_hircus
ENSSMAG00000010516pabpc1l9981.095ENSTSYG00000006645PABPC1L9966.614Carlito_syrichta
ENSSMAG00000010516pabpc1l9483.051ENSCAPG00000014519PABPC1L9962.364Cavia_aperea
ENSSMAG00000010516pabpc1l9882.171ENSCPOG00000013633PABPC1L9964.274Cavia_porcellus
ENSSMAG00000010516pabpc1l9886.047ENSCCAG00000023338PABPC1L8879.545Cebus_capucinus
ENSSMAG00000010516pabpc1l9887.597ENSCATG00000034065PABPC1L8980.682Cercocebus_atys
ENSSMAG00000010516pabpc1l9880.620ENSCLAG00000005298PABPC1L9963.477Chinchilla_lanigera
ENSSMAG00000010516pabpc1l9887.597ENSCSAG00000014242PABPC1L9968.379Chlorocebus_sabaeus
ENSSMAG00000010516pabpc1l9887.500ENSCPBG00000017755-10079.326Chrysemys_picta_bellii
ENSSMAG00000010516pabpc1l6382.759ENSCPBG00000007810-9182.443Chrysemys_picta_bellii
ENSSMAG00000010516pabpc1l9171.111ENSCING00000002796-9750.398Ciona_intestinalis
ENSSMAG00000010516pabpc1l9686.822ENSCSAVG00000004246-8970.199Ciona_savignyi
ENSSMAG00000010516pabpc1l9384.733ENSCSAVG00000003102-10082.550Ciona_savignyi
ENSSMAG00000010516pabpc1l9887.597ENSCANG00000037530PABPC1L8778.261Colobus_angolensis_palliatus
ENSSMAG00000010516pabpc1l9878.295ENSCGRG00001021938Pabpc1l9961.563Cricetulus_griseus_chok1gshd
ENSSMAG00000010516pabpc1l9878.295ENSCGRG00000007946Pabpc1l9961.563Cricetulus_griseus_crigri
ENSSMAG00000010516pabpc1l9792.537ENSCSEG00000021295pabpc1l9984.767Cynoglossus_semilaevis
ENSSMAG00000010516pabpc1l9897.674ENSCVAG00000015943-9996.947Cyprinodon_variegatus
ENSSMAG00000010516pabpc1l9992.040ENSDARG00000002597pabpc1l8895.385Danio_rerio
ENSSMAG00000010516pabpc1l9386.822ENSDNOG00000048450PABPC1L9967.363Dasypus_novemcinctus
ENSSMAG00000010516pabpc1l9882.946ENSDORG00000001067Pabpc1l9964.687Dipodomys_ordii
ENSSMAG00000010516pabpc1l9886.822ENSETEG00000009969PABPC1L7276.829Echinops_telfairi
ENSSMAG00000010516pabpc1l5674.684ENSEASG00005023407-6474.684Equus_asinus_asinus
ENSSMAG00000010516pabpc1l9386.822ENSEASG00005023408-10085.119Equus_asinus_asinus
ENSSMAG00000010516pabpc1l7662.651ENSECAG00000040139-8862.651Equus_caballus
ENSSMAG00000010516pabpc1l9885.271ENSEEUG00000005978PABPC1L9964.148Erinaceus_europaeus
ENSSMAG00000010516pabpc1l9893.382ENSELUG00000001811pabpc1l9987.810Esox_lucius
ENSSMAG00000010516pabpc1l9387.597ENSFCAG00000011692PABPC1L9967.520Felis_catus
ENSSMAG00000010516pabpc1l9886.029ENSFALG00000005372PABPC1L9966.162Ficedula_albicollis
ENSSMAG00000010516pabpc1l9882.171ENSFDAG00000008291PABPC1L9964.286Fukomys_damarensis
ENSSMAG00000010516pabpc1l9898.450ENSFHEG00000003398pabpc1l10086.977Fundulus_heteroclitus
ENSSMAG00000010516pabpc1l9893.798ENSGMOG00000004437pabpc1l9983.065Gadus_morhua
ENSSMAG00000010516pabpc1l10084.286ENSGALG00000004123PABPC1L9978.860Gallus_gallus
ENSSMAG00000010516pabpc1l9399.225ENSGAFG00000021057pabpc1l10081.915Gambusia_affinis
ENSSMAG00000010516pabpc1l9898.450ENSGACG00000002792pabpc1l10087.500Gasterosteus_aculeatus
ENSSMAG00000010516pabpc1l9887.500ENSGAGG00000000589PABPC1L9678.621Gopherus_agassizii
ENSSMAG00000010516pabpc1l9887.597ENSGGOG00000004584PABPC1L9968.058Gorilla_gorilla
ENSSMAG00000010516pabpc1l9898.450ENSHBUG00000006134pabpc1l10088.019Haplochromis_burtoni
ENSSMAG00000010516pabpc1l9882.171ENSHGLG00000008434PABPC1L9963.854Heterocephalus_glaber_female
ENSSMAG00000010516pabpc1l9882.171ENSHGLG00100012151PABPC1L9963.854Heterocephalus_glaber_male
ENSSMAG00000010516pabpc1l9882.353ENSHGLG00100019506-10084.831Heterocephalus_glaber_male
ENSSMAG00000010516pabpc1l9897.674ENSHCOG00000009270pabpc1l10085.691Hippocampus_comes
ENSSMAG00000010516pabpc1l9160.317ENSIPUG00000006760-9161.878Ictalurus_punctatus
ENSSMAG00000010516pabpc1l9892.647ENSIPUG00000012602pabpc1l9979.058Ictalurus_punctatus
ENSSMAG00000010516pabpc1l9160.317ENSIPUG00000006780-8762.011Ictalurus_punctatus
ENSSMAG00000010516pabpc1l9359.690ENSIPUG00000005537-10060.000Ictalurus_punctatus
ENSSMAG00000010516pabpc1l9883.721ENSSTOG00000003739PABPC1L9966.774Ictidomys_tridecemlineatus
ENSSMAG00000010516pabpc1l9952.837ENSJJAG00000022406Pabpc1l9950.952Jaculus_jaculus
ENSSMAG00000010516pabpc1l9897.674ENSKMAG00000016847pabpc1l10085.507Kryptolebias_marmoratus
ENSSMAG00000010516pabpc1l9897.030ENSLBEG00000010084pabpc1l10089.137Labrus_bergylta
ENSSMAG00000010516pabpc1l9887.500ENSLACG00000005762PABPC1L9881.306Latimeria_chalumnae
ENSSMAG00000010516pabpc1l9995.050ENSLOCG00000007519pabpc1l9980.223Lepisosteus_oculatus
ENSSMAG00000010516pabpc1l9886.047ENSLAFG00000003553PABPC1L10066.614Loxodonta_africana
ENSSMAG00000010516pabpc1l9887.597ENSMFAG00000040365PABPC1L8980.682Macaca_fascicularis
ENSSMAG00000010516pabpc1l9887.597ENSMNEG00000032298PABPC1L8778.947Macaca_nemestrina
ENSSMAG00000010516pabpc1l9887.597ENSMLEG00000043139PABPC1L8980.682Mandrillus_leucophaeus
ENSSMAG00000010516pabpc1l9896.899ENSMAMG00000011854pabpc1l10087.762Mastacembelus_armatus
ENSSMAG00000010516pabpc1l9898.450ENSMZEG00005023713pabpc1l10088.179Maylandia_zebra
ENSSMAG00000010516pabpc1l10084.286ENSMGAG00000003674PABPC1L9877.551Meleagris_gallopavo
ENSSMAG00000010516pabpc1l9878.295ENSMOCG00000013186Pabpc1l9960.577Microtus_ochrogaster
ENSSMAG00000010516pabpc1l9896.899ENSMMOG00000020574-9988.496Mola_mola
ENSSMAG00000010516pabpc1l9886.029ENSMODG00000016198PABPC1L9969.935Monodelphis_domestica
ENSSMAG00000010516pabpc1l9896.899ENSMALG00000021622pabpc1l10089.901Monopterus_albus
ENSSMAG00000010516pabpc1l9877.519MGP_CAROLIEiJ_G0024627Pabpc1l9960.543Mus_caroli
ENSSMAG00000010516pabpc1l9877.519ENSMUSG00000054582Pabpc1l9960.543Mus_musculus
ENSSMAG00000010516pabpc1l9877.519MGP_PahariEiJ_G0026071Pabpc1l10061.085Mus_pahari
ENSSMAG00000010516pabpc1l9877.519MGP_SPRETEiJ_G0025549Pabpc1l9960.543Mus_spretus
ENSSMAG00000010516pabpc1l9887.597ENSMPUG00000017646PABPC1L9972.863Mustela_putorius_furo
ENSSMAG00000010516pabpc1l9386.822ENSMLUG00000006324PABPC1L9769.068Myotis_lucifugus
ENSSMAG00000010516pabpc1l9779.845ENSNGAG00000010458Pabpc1l9962.701Nannospalax_galili
ENSSMAG00000010516pabpc1l9898.450ENSNBRG00000016633pabpc1l10093.735Neolamprologus_brichardi
ENSSMAG00000010516pabpc1l9885.294ENSMEUG00000007905-8966.062Notamacropus_eugenii
ENSSMAG00000010516pabpc1l9885.271ENSOPRG00000011846PABPC1L9966.502Ochotona_princeps
ENSSMAG00000010516pabpc1l9875.735ENSODEG00000002920-9778.750Octodon_degus
ENSSMAG00000010516pabpc1l9882.946ENSODEG00000015482PABPC1L9863.766Octodon_degus
ENSSMAG00000010516pabpc1l9898.450ENSONIG00000017314pabpc1l10088.019Oreochromis_niloticus
ENSSMAG00000010516pabpc1l9386.047ENSOANG00000015793-10062.254Ornithorhynchus_anatinus
ENSSMAG00000010516pabpc1l9885.271ENSOCUG00000003005PABPC1L9478.409Oryctolagus_cuniculus
ENSSMAG00000010516pabpc1l9894.574ENSORLG00000010322pabpc1l10088.084Oryzias_latipes
ENSSMAG00000010516pabpc1l9894.574ENSORLG00020021193pabpc1l10088.084Oryzias_latipes_hni
ENSSMAG00000010516pabpc1l9894.574ENSORLG00015017018pabpc1l10088.084Oryzias_latipes_hsok
ENSSMAG00000010516pabpc1l9395.349ENSOMEG00000010789pabpc1l10081.374Oryzias_melastigma
ENSSMAG00000010516pabpc1l9883.721ENSOGAG00000032999PABPC1L9966.825Otolemur_garnettii
ENSSMAG00000010516pabpc1l9387.597ENSOARG00000004578PABPC1L9967.742Ovis_aries
ENSSMAG00000010516pabpc1l9887.597ENSPPAG00000039677PABPC1L9968.058Pan_paniscus
ENSSMAG00000010516pabpc1l9887.597ENSPPRG00000019327-8880.583Panthera_pardus
ENSSMAG00000010516pabpc1l8888.525ENSPTIG00000006524PABPC1L9967.450Panthera_tigris_altaica
ENSSMAG00000010516pabpc1l9887.597ENSPTRG00000013531PABPC1L9887.597Pan_troglodytes
ENSSMAG00000010516pabpc1l9887.597ENSPANG00000018788PABPC1L8980.682Papio_anubis
ENSSMAG00000010516pabpc1l6567.778ENSPKIG00000016801-10070.000Paramormyrops_kingsleyae
ENSSMAG00000010516pabpc1l9991.045ENSPKIG00000007322pabpc1l10078.720Paramormyrops_kingsleyae
ENSSMAG00000010516pabpc1l9383.721ENSPKIG00000016810-9383.206Paramormyrops_kingsleyae
ENSSMAG00000010516pabpc1l9887.500ENSPSIG00000013289PABPC1L9981.055Pelodiscus_sinensis
ENSSMAG00000010516pabpc1l9399.225ENSPMGG00000023117pabpc1l9997.727Periophthalmus_magnuspinnatus
ENSSMAG00000010516pabpc1l7983.575ENSPMGG00000023121-9683.575Periophthalmus_magnuspinnatus
ENSSMAG00000010516pabpc1l9877.519ENSPEMG00000020671Pabpc1l9960.611Peromyscus_maniculatus_bairdii
ENSSMAG00000010516pabpc1l9898.450ENSPFOG00000013241pabpc1l9693.878Poecilia_formosa
ENSSMAG00000010516pabpc1l9398.450ENSPLAG00000023686-9298.462Poecilia_latipinna
ENSSMAG00000010516pabpc1l9898.450ENSPLAG00000017490-9693.651Poecilia_latipinna
ENSSMAG00000010516pabpc1l9398.450ENSPMEG00000009185-8898.462Poecilia_mexicana
ENSSMAG00000010516pabpc1l9898.450ENSPMEG00000007677pabpc1l10086.859Poecilia_mexicana
ENSSMAG00000010516pabpc1l9899.225ENSPREG00000015886pabpc1l9994.161Poecilia_reticulata
ENSSMAG00000010516pabpc1l9887.597ENSPPYG00000011042PABPC1L9968.203Pongo_abelii
ENSSMAG00000010516pabpc1l9985.938ENSPCAG00000011787-7585.938Procavia_capensis
ENSSMAG00000010516pabpc1l9883.721ENSPCOG00000020630PABPC1L9967.250Propithecus_coquereli
ENSSMAG00000010516pabpc1l9887.597ENSPVAG00000012663PABPC1L9965.495Pteropus_vampyrus
ENSSMAG00000010516pabpc1l9898.450ENSPNYG00000004101pabpc1l10093.976Pundamilia_nyererei
ENSSMAG00000010516pabpc1l9396.899ENSPNAG00000021248pabpc1l10072.684Pygocentrus_nattereri
ENSSMAG00000010516pabpc1l9876.744ENSRNOG00000012750Pabpc1l9960.925Rattus_norvegicus
ENSSMAG00000010516pabpc1l9886.822ENSRBIG00000035381PABPC1L9968.203Rhinopithecus_bieti
ENSSMAG00000010516pabpc1l9886.822ENSRROG00000044498PABPC1L9968.045Rhinopithecus_roxellana
ENSSMAG00000010516pabpc1l9886.822ENSSBOG00000009532-9967.091Saimiri_boliviensis_boliviensis
ENSSMAG00000010516pabpc1l9676.712ENSSHAG00000011446PABPC1L10064.777Sarcophilus_harrisii
ENSSMAG00000010516pabpc1l9993.434ENSSFOG00015017304pabpc1l9984.459Scleropages_formosus
ENSSMAG00000010516pabpc1l9898.450ENSSDUG00000014743pabpc1l10090.323Seriola_dumerili
ENSSMAG00000010516pabpc1l9498.077ENSSLDG00000006981pabpc1l9896.635Seriola_lalandi_dorsalis
ENSSMAG00000010516pabpc1l9888.235ENSSPUG00000004233PABPC1L9972.019Sphenodon_punctatus
ENSSMAG00000010516pabpc1l9896.124ENSSPAG00000017137pabpc1l9986.545Stegastes_partitus
ENSSMAG00000010516pabpc1l9887.597ENSSSCG00000007382PABPC1L9968.336Sus_scrofa
ENSSMAG00000010516pabpc1l9887.500ENSTGUG00000005114PABPC1L10069.797Taeniopygia_guttata
ENSSMAG00000010516pabpc1l9899.225ENSTRUG00000011085pabpc1l9791.928Takifugu_rubripes
ENSSMAG00000010516pabpc1l9890.000ENSTNIG00000017903pabpc1l9889.262Tetraodon_nigroviridis
ENSSMAG00000010516pabpc1l9887.597ENSTBEG00000002851PABPC1L7977.397Tupaia_belangeri
ENSSMAG00000010516pabpc1l9388.372ENSTTRG00000007618PABPC1L10066.060Tursiops_truncatus
ENSSMAG00000010516pabpc1l9387.597ENSUAMG00000017682PABPC1L9868.259Ursus_americanus
ENSSMAG00000010516pabpc1l9680.282ENSUMAG00000025436PABPC1L9273.259Ursus_maritimus
ENSSMAG00000010516pabpc1l9888.372ENSVVUG00000018939PABPC1L9975.494Vulpes_vulpes
ENSSMAG00000010516pabpc1l9390.698ENSXETG00000022831pabpc1l9969.904Xenopus_tropicalis
ENSSMAG00000010516pabpc1l9899.225ENSXCOG00000005459pabpc1l9995.035Xiphophorus_couchianus
ENSSMAG00000010516pabpc1l9899.225ENSXMAG00000017135pabpc1l9988.809Xiphophorus_maculatus

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