EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSMAG00000010899 (Gene tree)
Gene ID: -
Gene Symbol: srsf5a
Alias: fb49e01|im:6906390|sfrs5|sfrs5a|wu:fb49e01|wu:fj09b12
Full Name: serine/arginine-rich splicing factor 5a
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Minus strand
Length: 5082 bases
Position: chr17:3587540-3592621
Accession: ZDB-GENE-030131-7336
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000017817	RRM_1	PF00076.22	7.3e-33	1	2
ENSSMAP00000017817	RRM_1	PF00076.22	7.3e-33	2	2
ENSSMAP00000017817	RRM_3	PF08777.11	2.8e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000018023	-	1183	-	ENSSMAP00000017817	305 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000010899's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000010899's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSMAG00000010899	srsf5a	73	35.745	ENSSMAG00000002039	srsf9	71	34.703
ENSSMAG00000010899	srsf5a	64	58.163	ENSSMAG00000017447	-	54	57.143
ENSSMAG00000010899	srsf5a	74	38.627	ENSSMAG00000009719	-	67	41.969
ENSSMAG00000010899	srsf5a	66	70.792	ENSSMAG00000019728	srsf5b	61	71.357
ENSSMAG00000010899	srsf5a	61	38.342	ENSSMAG00000007018	-	82	34.728

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000010899	srsf5a	100	82.019	ENSAPOG00000017395	srsf5a	78	81.818	Acanthochromis_polyacanthus
ENSSMAG00000010899	srsf5a	83	82.609	ENSACIG00000011892	srsf5a	88	100.000	Amphilophus_citrinellus
ENSSMAG00000010899	srsf5a	83	86.561	ENSAOCG00000014967	srsf5a	80	81.818	Amphiprion_ocellaris
ENSSMAG00000010899	srsf5a	83	86.561	ENSAPEG00000009297	srsf5a	80	81.818	Amphiprion_percula
ENSSMAG00000010899	srsf5a	100	84.918	ENSATEG00000000198	srsf5a	100	82.951	Anabas_testudineus
ENSSMAG00000010899	srsf5a	66	70.297	ENSAPLG00000002469	-	70	70.297	Anas_platyrhynchos
ENSSMAG00000010899	srsf5a	66	72.500	ENSACAG00000029015	-	68	72.637	Anolis_carolinensis
ENSSMAG00000010899	srsf5a	83	88.538	ENSACLG00000027166	srsf5a	100	82.903	Astatotilapia_calliptera
ENSSMAG00000010899	srsf5a	66	82.500	ENSAMXG00000030476	srsf5a	67	82.500	Astyanax_mexicanus
ENSSMAG00000010899	srsf5a	66	73.632	ENSCPBG00000021518	-	70	73.632	Chrysemys_picta_bellii
ENSSMAG00000010899	srsf5a	66	57.500	ENSCSAVG00000011376	-	78	58.500	Ciona_savignyi
ENSSMAG00000010899	srsf5a	83	89.723	ENSCSEG00000008109	srsf5a	100	81.538	Cynoglossus_semilaevis
ENSSMAG00000010899	srsf5a	82	79.681	ENSCVAG00000016982	srsf5a	96	81.560	Cyprinodon_variegatus
ENSSMAG00000010899	srsf5a	86	73.946	ENSDARG00000029818	srsf5a	100	77.181	Danio_rerio
ENSSMAG00000010899	srsf5a	66	78.641	ENSELUG00000020439	srsf5a	62	79.612	Esox_lucius
ENSSMAG00000010899	srsf5a	66	70.000	ENSFALG00000005098	-	64	70.500	Ficedula_albicollis
ENSSMAG00000010899	srsf5a	84	82.558	ENSFHEG00000003955	srsf5a	97	86.897	Fundulus_heteroclitus
ENSSMAG00000010899	srsf5a	66	82.000	ENSGMOG00000000869	srsf5a	94	82.500	Gadus_morhua
ENSSMAG00000010899	srsf5a	66	70.000	ENSGALG00000033259	SRSF5A	63	69.500	Gallus_gallus
ENSSMAG00000010899	srsf5a	93	65.398	ENSGAFG00000018237	srsf5a	73	68.504	Gambusia_affinis
ENSSMAG00000010899	srsf5a	66	73.632	ENSGAGG00000007312	-	70	73.632	Gopherus_agassizii
ENSSMAG00000010899	srsf5a	83	87.747	ENSHBUG00000014048	srsf5a	100	82.258	Haplochromis_burtoni
ENSSMAG00000010899	srsf5a	66	85.000	ENSHCOG00000017557	srsf5a	62	85.000	Hippocampus_comes
ENSSMAG00000010899	srsf5a	90	69.825	ENSIPUG00000003439	srsf5a	69	82.500	Ictalurus_punctatus
ENSSMAG00000010899	srsf5a	100	69.653	ENSKMAG00000014937	srsf5a	100	65.896	Kryptolebias_marmoratus
ENSSMAG00000010899	srsf5a	66	87.255	ENSLBEG00000017153	srsf5a	74	87.745	Labrus_bergylta
ENSSMAG00000010899	srsf5a	66	78.000	ENSLACG00000017874	-	70	78.000	Latimeria_chalumnae
ENSSMAG00000010899	srsf5a	66	80.500	ENSLOCG00000014075	srsf5a	100	71.203	Lepisosteus_oculatus
ENSSMAG00000010899	srsf5a	83	83.004	ENSMAMG00000000192	srsf5a	100	78.317	Mastacembelus_armatus
ENSSMAG00000010899	srsf5a	83	88.142	ENSMZEG00005010485	srsf5a	100	82.581	Maylandia_zebra
ENSSMAG00000010899	srsf5a	97	53.378	ENSMGAG00000011888	-	96	69.780	Meleagris_gallopavo
ENSSMAG00000010899	srsf5a	83	83.399	ENSMMOG00000009793	srsf5a	100	77.116	Mola_mola
ENSSMAG00000010899	srsf5a	100	76.052	ENSMALG00000021194	srsf5a	100	75.081	Monopterus_albus
ENSSMAG00000010899	srsf5a	83	87.747	ENSNBRG00000000771	srsf5a	100	82.258	Neolamprologus_brichardi
ENSSMAG00000010899	srsf5a	83	87.747	ENSONIG00000019583	srsf5a	100	82.258	Oreochromis_niloticus
ENSSMAG00000010899	srsf5a	83	79.447	ENSORLG00000009268	srsf5a	100	77.377	Oryzias_latipes
ENSSMAG00000010899	srsf5a	83	79.447	ENSORLG00020003281	srsf5	100	77.377	Oryzias_latipes_hni
ENSSMAG00000010899	srsf5a	83	79.447	ENSORLG00015023075	srsf5	100	77.377	Oryzias_latipes_hsok
ENSSMAG00000010899	srsf5a	83	78.571	ENSOMEG00000000628	srsf5a	100	77.705	Oryzias_melastigma
ENSSMAG00000010899	srsf5a	66	81.500	ENSPKIG00000002054	srsf5a	68	81.000	Paramormyrops_kingsleyae
ENSSMAG00000010899	srsf5a	66	72.637	ENSPSIG00000008238	-	69	70.149	Pelodiscus_sinensis
ENSSMAG00000010899	srsf5a	66	75.743	ENSPMGG00000020125	srsf5a	55	76.000	Periophthalmus_magnuspinnatus
ENSSMAG00000010899	srsf5a	66	85.500	ENSPFOG00000022993	srsf5a	84	75.540	Poecilia_formosa
ENSSMAG00000010899	srsf5a	65	85.427	ENSPLAG00000005508	srsf5a	83	75.451	Poecilia_latipinna
ENSSMAG00000010899	srsf5a	66	85.500	ENSPMEG00000016339	srsf5a	84	75.899	Poecilia_mexicana
ENSSMAG00000010899	srsf5a	66	86.000	ENSPREG00000018091	srsf5a	79	79.070	Poecilia_reticulata
ENSSMAG00000010899	srsf5a	83	88.142	ENSPNYG00000021245	srsf5a	100	82.581	Pundamilia_nyererei
ENSSMAG00000010899	srsf5a	66	82.500	ENSSFOG00015008377	srsf5	66	80.500	Scleropages_formosus
ENSSMAG00000010899	srsf5a	100	83.280	ENSSDUG00000006103	srsf5a	100	80.707	Seriola_dumerili
ENSSMAG00000010899	srsf5a	100	83.067	ENSSLDG00000004146	srsf5a	100	80.511	Seriola_lalandi_dorsalis
ENSSMAG00000010899	srsf5a	66	69.652	ENSSPUG00000002052	-	68	69.652	Sphenodon_punctatus
ENSSMAG00000010899	srsf5a	83	84.585	ENSSPAG00000002821	srsf5a	80	81.028	Stegastes_partitus
ENSSMAG00000010899	srsf5a	80	54.093	ENSTGUG00000011492	-	68	70.500	Taeniopygia_guttata
ENSSMAG00000010899	srsf5a	100	84.142	ENSTRUG00000022908	srsf5a	100	82.524	Takifugu_rubripes
ENSSMAG00000010899	srsf5a	66	77.612	ENSXETG00000017937	srsf5a	72	76.617	Xenopus_tropicalis
ENSSMAG00000010899	srsf5a	84	82.946	ENSXCOG00000015338	srsf5a	78	79.365	Xiphophorus_couchianus
ENSSMAG00000010899	srsf5a	84	79.008	ENSXMAG00000012823	srsf5a	79	80.469	Xiphophorus_maculatus