EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSMAG00000011704 (Gene tree)
Gene ID: -
Gene Symbol: rif1
Alias: fc38c03|si:dkey-89p3.2|wu:fc38c03
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Minus strand
Length: 15305 bases
Position: chr14:21151477-21166781
Accession: ZDB-GENE-030131-3406
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000019777	Rif1_N	PF12231.8	1.5e-78	1	1
ENSSMAP00000019685	Rif1_N	PF12231.8	1.6e-78	1	1
ENSSMAP00000019819	Rif1_N	PF12231.8	2.9e-73	1	1
ENSSMAP00000019538	Rif1_N	PF12231.8	3.5e-41	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000020022	-	7521	-	ENSSMAP00000019777	2506 (aa)	-	-
ENSSMAT00000020063	-	7419	-	ENSSMAP00000019819	2472 (aa)	-	-
ENSSMAT00000019928	-	7656	-	ENSSMAP00000019685	2551 (aa)	-	-
ENSSMAT00000019781	-	8017	-	ENSSMAP00000019538	2399 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000011704's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000011704's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000011704	rif1	50	48.522	ENSG00000080345	RIF1	96	53.199	Homo_sapiens
ENSSMAG00000011704	rif1	62	49.383	ENSAMEG00000008461	RIF1	64	49.299	Ailuropoda_melanoleuca
ENSSMAG00000011704	rif1	68	76.462	ENSACIG00000017765	rif1	85	70.007	Amphilophus_citrinellus
ENSSMAG00000011704	rif1	96	74.129	ENSAOCG00000017231	rif1	83	71.106	Amphiprion_ocellaris
ENSSMAG00000011704	rif1	96	76.341	ENSAPEG00000013228	rif1	51	76.341	Amphiprion_percula
ENSSMAG00000011704	rif1	97	70.023	ENSATEG00000022887	rif1	99	70.023	Anabas_testudineus
ENSSMAG00000011704	rif1	60	51.131	ENSAPLG00000007092	RIF1	69	51.447	Anas_platyrhynchos
ENSSMAG00000011704	rif1	61	48.308	ENSACAG00000003714	RIF1	66	48.439	Anolis_carolinensis
ENSSMAG00000011704	rif1	63	49.924	ENSANAG00000024840	RIF1	51	50.507	Aotus_nancymaae
ENSSMAG00000011704	rif1	74	67.164	ENSAMXG00000010910	rif1	79	67.164	Astyanax_mexicanus
ENSSMAG00000011704	rif1	61	49.515	ENSBTAG00000021020	RIF1	60	49.648	Bos_taurus
ENSSMAG00000011704	rif1	63	49.204	ENSCJAG00000003138	RIF1	79	49.651	Callithrix_jacchus
ENSSMAG00000011704	rif1	67	48.852	ENSCAFG00000005670	RIF1	67	48.811	Canis_familiaris
ENSSMAG00000011704	rif1	66	48.852	ENSCAFG00020016401	RIF1	69	48.811	Canis_lupus_dingo
ENSSMAG00000011704	rif1	63	49.096	ENSCHIG00000020327	RIF1	63	49.612	Capra_hircus
ENSSMAG00000011704	rif1	63	49.235	ENSTSYG00000008861	RIF1	62	49.235	Carlito_syrichta
ENSSMAG00000011704	rif1	50	55.152	ENSCAPG00000008957	RIF1	68	55.488	Cavia_aperea
ENSSMAG00000011704	rif1	63	47.654	ENSCPOG00000037898	RIF1	68	47.695	Cavia_porcellus
ENSSMAG00000011704	rif1	70	48.018	ENSCCAG00000024760	RIF1	67	47.901	Cebus_capucinus
ENSSMAG00000011704	rif1	67	48.677	ENSCATG00000033353	RIF1	51	49.882	Cercocebus_atys
ENSSMAG00000011704	rif1	62	47.826	ENSCLAG00000001517	RIF1	64	48.013	Chinchilla_lanigera
ENSSMAG00000011704	rif1	67	48.409	ENSCSAG00000016089	RIF1	52	49.245	Chlorocebus_sabaeus
ENSSMAG00000011704	rif1	61	51.429	ENSCPBG00000025885	RIF1	70	51.592	Chrysemys_picta_bellii
ENSSMAG00000011704	rif1	64	48.848	ENSCANG00000028962	RIF1	64	49.881	Colobus_angolensis_palliatus
ENSSMAG00000011704	rif1	64	45.710	ENSCGRG00001024589	Rif1	66	46.913	Cricetulus_griseus_chok1gshd
ENSSMAG00000011704	rif1	63	47.228	ENSCGRG00000010713	Rif1	66	48.532	Cricetulus_griseus_crigri
ENSSMAG00000011704	rif1	91	74.733	ENSCSEG00000003945	rif1	99	62.740	Cynoglossus_semilaevis
ENSSMAG00000011704	rif1	86	72.159	ENSCVAG00000022479	rif1	96	70.115	Cyprinodon_variegatus
ENSSMAG00000011704	rif1	73	61.458	ENSDARG00000062650	rif1	81	61.458	Danio_rerio
ENSSMAG00000011704	rif1	62	47.840	ENSDNOG00000011194	RIF1	62	47.840	Dasypus_novemcinctus
ENSSMAG00000011704	rif1	56	57.522	ENSETEG00000012421	RIF1	74	45.591	Echinops_telfairi
ENSSMAG00000011704	rif1	53	67.763	ENSEASG00005023434	RIF1	71	67.763	Equus_asinus_asinus
ENSSMAG00000011704	rif1	57	60.000	ENSECAG00000012679	RIF1	62	58.744	Equus_caballus
ENSSMAG00000011704	rif1	67	64.649	ENSELUG00000006826	rif1	71	60.427	Esox_lucius
ENSSMAG00000011704	rif1	62	49.728	ENSFCAG00000029742	RIF1	64	49.418	Felis_catus
ENSSMAG00000011704	rif1	59	52.218	ENSFALG00000013874	RIF1	66	52.876	Ficedula_albicollis
ENSSMAG00000011704	rif1	94	68.392	ENSFHEG00000013721	rif1	98	68.392	Fundulus_heteroclitus
ENSSMAG00000011704	rif1	63	69.697	ENSGMOG00000003517	rif1	99	69.355	Gadus_morhua
ENSSMAG00000011704	rif1	56	52.817	ENSGALG00000012484	RIF1	66	50.579	Gallus_gallus
ENSSMAG00000011704	rif1	90	81.364	ENSGAFG00000017196	rif1	99	74.636	Gambusia_affinis
ENSSMAG00000011704	rif1	89	79.574	ENSGACG00000008579	rif1	95	79.661	Gasterosteus_aculeatus
ENSSMAG00000011704	rif1	60	51.913	ENSGAGG00000012595	RIF1	62	60.000	Gopherus_agassizii
ENSSMAG00000011704	rif1	91	85.878	ENSHBUG00000007125	rif1	99	85.878	Haplochromis_burtoni
ENSSMAG00000011704	rif1	57	50.754	ENSHGLG00100009807	RIF1	62	50.754	Heterocephalus_glaber_male
ENSSMAG00000011704	rif1	74	65.003	ENSHCOG00000015943	rif1	71	64.809	Hippocampus_comes
ENSSMAG00000011704	rif1	70	66.667	ENSIPUG00000021703	rif1	74	66.667	Ictalurus_punctatus
ENSSMAG00000011704	rif1	68	49.081	ENSSTOG00000020712	RIF1	53	48.811	Ictidomys_tridecemlineatus
ENSSMAG00000011704	rif1	61	48.349	ENSJJAG00000023000	Rif1	65	48.624	Jaculus_jaculus
ENSSMAG00000011704	rif1	96	61.259	ENSKMAG00000002852	rif1	99	60.050	Kryptolebias_marmoratus
ENSSMAG00000011704	rif1	67	50.983	ENSLACG00000005425	RIF1	67	55.414	Latimeria_chalumnae
ENSSMAG00000011704	rif1	79	60.550	ENSLOCG00000002657	rif1	83	61.468	Lepisosteus_oculatus
ENSSMAG00000011704	rif1	63	49.085	ENSLAFG00000009796	RIF1	65	49.300	Loxodonta_africana
ENSSMAG00000011704	rif1	67	48.753	ENSMFAG00000032233	RIF1	51	50.000	Macaca_fascicularis
ENSSMAG00000011704	rif1	67	48.753	ENSMMUG00000008611	RIF1	50	49.961	Macaca_mulatta
ENSSMAG00000011704	rif1	67	48.904	ENSMNEG00000031616	RIF1	51	50.118	Macaca_nemestrina
ENSSMAG00000011704	rif1	67	48.677	ENSMLEG00000042945	RIF1	66	49.922	Mandrillus_leucophaeus
ENSSMAG00000011704	rif1	93	69.545	ENSMAMG00000001745	rif1	99	69.171	Mastacembelus_armatus
ENSSMAG00000011704	rif1	95	64.306	ENSMZEG00005020920	rif1	99	64.306	Maylandia_zebra
ENSSMAG00000011704	rif1	59	52.214	ENSMGAG00000012732	RIF1	69	52.297	Meleagris_gallopavo
ENSSMAG00000011704	rif1	59	63.025	ENSMAUG00000013158	Rif1	64	63.025	Mesocricetus_auratus
ENSSMAG00000011704	rif1	63	48.273	ENSMICG00000046127	RIF1	65	48.541	Microcebus_murinus
ENSSMAG00000011704	rif1	61	47.194	ENSMOCG00000009381	Rif1	65	47.504	Microtus_ochrogaster
ENSSMAG00000011704	rif1	96	68.984	ENSMMOG00000006519	rif1	99	68.984	Mola_mola
ENSSMAG00000011704	rif1	61	50.234	ENSMODG00000003703	RIF1	64	50.757	Monodelphis_domestica
ENSSMAG00000011704	rif1	76	67.612	ENSMALG00000016759	rif1	94	66.940	Monopterus_albus
ENSSMAG00000011704	rif1	61	48.249	MGP_CAROLIEiJ_G0023555	Rif1	57	49.908	Mus_caroli
ENSSMAG00000011704	rif1	63	47.731	ENSMUSG00000036202	Rif1	51	49.097	Mus_musculus
ENSSMAG00000011704	rif1	61	47.319	MGP_PahariEiJ_G0025006	Rif1	63	48.397	Mus_pahari
ENSSMAG00000011704	rif1	61	48.776	MGP_SPRETEiJ_G0024476	Rif1	51	49.881	Mus_spretus
ENSSMAG00000011704	rif1	61	49.023	ENSMPUG00000000371	RIF1	63	49.023	Mustela_putorius_furo
ENSSMAG00000011704	rif1	56	46.699	ENSMLUG00000003376	RIF1	60	47.041	Myotis_lucifugus
ENSSMAG00000011704	rif1	63	48.777	ENSNGAG00000009268	Rif1	68	48.764	Nannospalax_galili
ENSSMAG00000011704	rif1	95	71.758	ENSNBRG00000014257	rif1	99	71.758	Neolamprologus_brichardi
ENSSMAG00000011704	rif1	51	47.829	ENSNLEG00000010955	RIF1	51	49.029	Nomascus_leucogenys
ENSSMAG00000011704	rif1	62	46.769	ENSODEG00000003950	RIF1	66	47.113	Octodon_degus
ENSSMAG00000011704	rif1	95	78.841	ENSONIG00000013657	rif1	100	78.841	Oreochromis_niloticus
ENSSMAG00000011704	rif1	52	54.986	ENSOANG00000006078	-	55	54.986	Ornithorhynchus_anatinus
ENSSMAG00000011704	rif1	70	70.487	ENSORLG00020001302	rif1	78	69.914	Oryzias_latipes_hni
ENSSMAG00000011704	rif1	93	70.506	ENSORLG00015000009	rif1	78	69.628	Oryzias_latipes_hsok
ENSSMAG00000011704	rif1	93	70.588	ENSOMEG00000021513	rif1	79	70.588	Oryzias_melastigma
ENSSMAG00000011704	rif1	61	49.065	ENSOGAG00000006141	RIF1	63	49.174	Otolemur_garnettii
ENSSMAG00000011704	rif1	67	48.905	ENSPPRG00000003618	RIF1	70	49.341	Panthera_pardus
ENSSMAG00000011704	rif1	51	48.716	ENSPTRG00000012534	RIF1	51	49.725	Pan_troglodytes
ENSSMAG00000011704	rif1	68	48.714	ENSPANG00000008525	RIF1	67	49.922	Papio_anubis
ENSSMAG00000011704	rif1	63	53.155	ENSPKIG00000004267	rif1	69	53.723	Paramormyrops_kingsleyae
ENSSMAG00000011704	rif1	73	66.282	ENSPMGG00000016141	rif1	90	66.282	Periophthalmus_magnuspinnatus
ENSSMAG00000011704	rif1	64	48.305	ENSPEMG00000000446	Rif1	53	48.313	Peromyscus_maniculatus_bairdii
ENSSMAG00000011704	rif1	63	49.679	ENSPCIG00000009185	RIF1	65	50.350	Phascolarctos_cinereus
ENSSMAG00000011704	rif1	94	71.386	ENSPFOG00000017804	rif1	99	67.123	Poecilia_formosa
ENSSMAG00000011704	rif1	93	71.023	ENSPFOG00000000554	-	99	68.732	Poecilia_formosa
ENSSMAG00000011704	rif1	94	72.586	ENSPLAG00000017945	rif1	99	68.079	Poecilia_latipinna
ENSSMAG00000011704	rif1	91	71.023	ENSPMEG00000006897	-	99	67.013	Poecilia_mexicana
ENSSMAG00000011704	rif1	90	77.637	ENSPREG00000018052	rif1	91	77.637	Poecilia_reticulata
ENSSMAG00000011704	rif1	50	48.673	ENSPPYG00000012846	RIF1	50	49.450	Pongo_abelii
ENSSMAG00000011704	rif1	62	49.298	ENSPCOG00000027888	RIF1	64	49.451	Propithecus_coquereli
ENSSMAG00000011704	rif1	52	58.896	ENSPVAG00000014276	RIF1	57	58.896	Pteropus_vampyrus
ENSSMAG00000011704	rif1	95	64.899	ENSPNYG00000012940	rif1	99	64.899	Pundamilia_nyererei
ENSSMAG00000011704	rif1	64	67.692	ENSPNAG00000016685	rif1	81	67.692	Pygocentrus_nattereri
ENSSMAG00000011704	rif1	60	47.923	ENSRNOG00000054901	Rif1	52	47.447	Rattus_norvegicus
ENSSMAG00000011704	rif1	65	49.174	ENSRBIG00000003704	RIF1	50	49.215	Rhinopithecus_bieti
ENSSMAG00000011704	rif1	65	49.728	ENSRROG00000028206	RIF1	66	50.157	Rhinopithecus_roxellana
ENSSMAG00000011704	rif1	61	49.179	ENSSHAG00000018552	RIF1	65	50.000	Sarcophilus_harrisii
ENSSMAG00000011704	rif1	71	64.417	ENSSFOG00015021539	rif1	84	64.417	Scleropages_formosus
ENSSMAG00000011704	rif1	70	80.914	ENSSDUG00000015632	rif1	85	76.471	Seriola_dumerili
ENSSMAG00000011704	rif1	81	72.736	ENSSLDG00000019531	rif1	99	74.876	Seriola_lalandi_dorsalis
ENSSMAG00000011704	rif1	59	51.990	ENSSPUG00000003062	RIF1	67	52.114	Sphenodon_punctatus
ENSSMAG00000011704	rif1	57	82.462	ENSSPAG00000018359	rif1	98	75.800	Stegastes_partitus
ENSSMAG00000011704	rif1	76	68.329	ENSTRUG00000015808	rif1	85	68.718	Takifugu_rubripes
ENSSMAG00000011704	rif1	86	72.699	ENSTNIG00000011538	rif1	83	72.699	Tetraodon_nigroviridis
ENSSMAG00000011704	rif1	57	54.268	ENSTBEG00000016082	RIF1	61	50.600	Tupaia_belangeri
ENSSMAG00000011704	rif1	62	49.195	ENSTTRG00000011190	RIF1	63	49.445	Tursiops_truncatus
ENSSMAG00000011704	rif1	59	47.288	ENSUAMG00000026385	RIF1	62	47.399	Ursus_americanus
ENSSMAG00000011704	rif1	65	48.807	ENSUMAG00000000337	RIF1	66	48.911	Ursus_maritimus
ENSSMAG00000011704	rif1	65	48.263	ENSVPAG00000002162	RIF1	67	48.556	Vicugna_pacos
ENSSMAG00000011704	rif1	68	48.841	ENSVVUG00000011293	RIF1	69	47.492	Vulpes_vulpes
ENSSMAG00000011704	rif1	65	48.773	ENSXETG00000004530	rif1	70	46.197	Xenopus_tropicalis
ENSSMAG00000011704	rif1	90	69.778	ENSXMAG00000000506	rif1	99	65.200	Xiphophorus_maculatus