EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSMAG00000012489 (Gene tree)
Gene ID: -
Gene Symbol: si:ch73-63e15.2
Alias: si:dkey-19f23.4
Full Name: strawberry notch homolog 2
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Plus strand
Length: 59541 bases
Position: chr12:16871642-16931182
Accession: 29158
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000020568	ResIII	PF04851.15	7.7e-08	1	1
ENSSMAP00000020502	ResIII	PF04851.15	8.3e-08	1	1
ENSSMAP00000020409	ResIII	PF04851.15	8.6e-08	1	1
ENSSMAP00000020380	ResIII	PF04851.15	8.7e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000020627	-	8651	-	ENSSMAP00000020380	1633 (aa)	-	-
ENSSMAT00000020820	-	8010	-	ENSSMAP00000020568	1545 (aa)	-	-
ENSSMAT00000020753	-	8564	-	ENSSMAP00000020502	1604 (aa)	-	-
ENSSMAT00000020656	-	8567	-	ENSSMAP00000020409	1624 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000012489's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000012489's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSMAG00000012489	si:ch73-63e15.2	64	62.812	ENSSMAG00000013640	sbno1	77	62.812

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000012489	si:ch73-63e15.2	74	67.637	ENSG00000064932	SBNO2	88	67.750	Homo_sapiens
ENSSMAG00000012489	si:ch73-63e15.2	100	88.509	ENSAPOG00000003185	si:ch73-63e15.2	100	88.203	Acanthochromis_polyacanthus
ENSSMAG00000012489	si:ch73-63e15.2	100	88.577	ENSAOCG00000016581	si:ch73-63e15.2	100	88.454	Amphiprion_ocellaris
ENSSMAG00000012489	si:ch73-63e15.2	100	88.332	ENSAPEG00000008862	si:ch73-63e15.2	100	88.332	Amphiprion_percula
ENSSMAG00000012489	si:ch73-63e15.2	100	84.568	ENSATEG00000023838	si:ch73-63e15.2	99	87.843	Anabas_testudineus
ENSSMAG00000012489	si:ch73-63e15.2	73	72.554	ENSAPLG00000007158	SBNO2	89	72.688	Anas_platyrhynchos
ENSSMAG00000012489	si:ch73-63e15.2	74	67.209	ENSANAG00000026685	SBNO2	89	67.066	Aotus_nancymaae
ENSSMAG00000012489	si:ch73-63e15.2	100	79.115	ENSACLG00000005090	si:ch73-63e15.2	100	78.401	Astatotilapia_calliptera
ENSSMAG00000012489	si:ch73-63e15.2	75	79.387	ENSAMXG00000018868	sbno2a	96	80.558	Astyanax_mexicanus
ENSSMAG00000012489	si:ch73-63e15.2	76	80.697	ENSAMXG00000015881	si:ch73-63e15.2	85	80.697	Astyanax_mexicanus
ENSSMAG00000012489	si:ch73-63e15.2	74	68.900	ENSBTAG00000020780	SBNO2	88	68.520	Bos_taurus
ENSSMAG00000012489	si:ch73-63e15.2	73	69.331	ENSCAFG00000019543	SBNO2	84	69.284	Canis_familiaris
ENSSMAG00000012489	si:ch73-63e15.2	73	69.331	ENSCAFG00020017115	SBNO2	89	69.284	Canis_lupus_dingo
ENSSMAG00000012489	si:ch73-63e15.2	73	69.271	ENSCHIG00000026127	SBNO2	86	69.037	Capra_hircus
ENSSMAG00000012489	si:ch73-63e15.2	73	66.579	ENSCAPG00000005731	SBNO2	94	66.433	Cavia_aperea
ENSSMAG00000012489	si:ch73-63e15.2	73	66.464	ENSCPOG00000007477	SBNO2	87	65.923	Cavia_porcellus
ENSSMAG00000012489	si:ch73-63e15.2	74	67.209	ENSCCAG00000037518	SBNO2	89	67.066	Cebus_capucinus
ENSSMAG00000012489	si:ch73-63e15.2	74	67.836	ENSCATG00000037046	SBNO2	88	67.579	Cercocebus_atys
ENSSMAG00000012489	si:ch73-63e15.2	74	67.725	ENSCLAG00000010178	SBNO2	99	68.297	Chinchilla_lanigera
ENSSMAG00000012489	si:ch73-63e15.2	73	68.348	ENSCSAG00000012317	SBNO2	84	67.962	Chlorocebus_sabaeus
ENSSMAG00000012489	si:ch73-63e15.2	74	70.000	ENSCPBG00000008920	SBNO2	91	70.923	Chrysemys_picta_bellii
ENSSMAG00000012489	si:ch73-63e15.2	71	67.589	ENSCANG00000036745	SBNO2	96	67.589	Colobus_angolensis_palliatus
ENSSMAG00000012489	si:ch73-63e15.2	73	67.130	ENSCGRG00001023960	Sbno2	88	65.033	Cricetulus_griseus_chok1gshd
ENSSMAG00000012489	si:ch73-63e15.2	73	68.375	ENSCGRG00000011984	Sbno2	88	66.224	Cricetulus_griseus_crigri
ENSSMAG00000012489	si:ch73-63e15.2	77	89.553	ENSCSEG00000006856	si:ch73-63e15.2	97	92.022	Cynoglossus_semilaevis
ENSSMAG00000012489	si:ch73-63e15.2	93	79.038	ENSCVAG00000005663	si:ch73-63e15.2	100	76.913	Cyprinodon_variegatus
ENSSMAG00000012489	si:ch73-63e15.2	77	79.732	ENSDARG00000016188	SBNO2	97	73.077	Danio_rerio
ENSSMAG00000012489	si:ch73-63e15.2	78	75.743	ENSDARG00000098801	sbno2a	92	75.943	Danio_rerio
ENSSMAG00000012489	si:ch73-63e15.2	73	68.696	ENSDORG00000002916	Sbno2	88	66.943	Dipodomys_ordii
ENSSMAG00000012489	si:ch73-63e15.2	74	68.552	ENSEASG00005021621	SBNO2	89	68.493	Equus_asinus_asinus
ENSSMAG00000012489	si:ch73-63e15.2	74	68.295	ENSECAG00000011827	SBNO2	89	68.579	Equus_caballus
ENSSMAG00000012489	si:ch73-63e15.2	85	85.097	ENSELUG00000020457	si:ch73-63e15.2	84	85.304	Esox_lucius
ENSSMAG00000012489	si:ch73-63e15.2	74	71.894	ENSFALG00000013988	SBNO2	92	67.988	Ficedula_albicollis
ENSSMAG00000012489	si:ch73-63e15.2	72	66.023	ENSFDAG00000015186	SBNO2	88	65.690	Fukomys_damarensis
ENSSMAG00000012489	si:ch73-63e15.2	100	78.151	ENSFHEG00000022262	si:ch73-63e15.2	89	83.020	Fundulus_heteroclitus
ENSSMAG00000012489	si:ch73-63e15.2	74	88.112	ENSGMOG00000007542	si:ch73-63e15.2	96	88.112	Gadus_morhua
ENSSMAG00000012489	si:ch73-63e15.2	75	72.030	ENSGALG00000037522	SBNO2	86	71.946	Gallus_gallus
ENSSMAG00000012489	si:ch73-63e15.2	77	89.159	ENSGAFG00000004860	si:ch73-63e15.2	93	90.144	Gambusia_affinis
ENSSMAG00000012489	si:ch73-63e15.2	73	91.565	ENSGACG00000013190	si:ch73-63e15.2	95	91.565	Gasterosteus_aculeatus
ENSSMAG00000012489	si:ch73-63e15.2	75	72.236	ENSGAGG00000008348	SBNO2	87	72.152	Gopherus_agassizii
ENSSMAG00000012489	si:ch73-63e15.2	99	80.497	ENSHBUG00000010742	si:ch73-63e15.2	100	78.681	Haplochromis_burtoni
ENSSMAG00000012489	si:ch73-63e15.2	73	68.348	ENSHGLG00000008739	SBNO2	86	67.489	Heterocephalus_glaber_female
ENSSMAG00000012489	si:ch73-63e15.2	74	67.635	ENSHGLG00100005269	SBNO2	99	68.261	Heterocephalus_glaber_male
ENSSMAG00000012489	si:ch73-63e15.2	78	87.126	ENSHCOG00000000884	si:ch73-63e15.2	96	84.996	Hippocampus_comes
ENSSMAG00000012489	si:ch73-63e15.2	61	82.623	ENSIPUG00000019672	sbno2	99	77.124	Ictalurus_punctatus
ENSSMAG00000012489	si:ch73-63e15.2	74	80.346	ENSIPUG00000000537	si:ch73-63e15.2	97	73.233	Ictalurus_punctatus
ENSSMAG00000012489	si:ch73-63e15.2	73	68.490	ENSSTOG00000025832	SBNO2	90	65.072	Ictidomys_tridecemlineatus
ENSSMAG00000012489	si:ch73-63e15.2	74	65.206	ENSJJAG00000017397	Sbno2	89	63.852	Jaculus_jaculus
ENSSMAG00000012489	si:ch73-63e15.2	100	80.995	ENSKMAG00000005541	si:ch73-63e15.2	100	78.931	Kryptolebias_marmoratus
ENSSMAG00000012489	si:ch73-63e15.2	100	85.944	ENSLBEG00000025016	si:ch73-63e15.2	99	94.444	Labrus_bergylta
ENSSMAG00000012489	si:ch73-63e15.2	76	83.741	ENSLOCG00000004643	si:ch73-63e15.2	85	85.516	Lepisosteus_oculatus
ENSSMAG00000012489	si:ch73-63e15.2	72	65.229	ENSLAFG00000008824	SBNO2	89	64.908	Loxodonta_africana
ENSSMAG00000012489	si:ch73-63e15.2	74	66.239	ENSMFAG00000040030	SBNO2	90	66.239	Macaca_fascicularis
ENSSMAG00000012489	si:ch73-63e15.2	73	68.348	ENSMMUG00000010886	SBNO2	87	66.580	Macaca_mulatta
ENSSMAG00000012489	si:ch73-63e15.2	74	67.836	ENSMNEG00000039927	SBNO2	88	67.579	Macaca_nemestrina
ENSSMAG00000012489	si:ch73-63e15.2	67	68.962	ENSMLEG00000038556	SBNO2	91	68.820	Mandrillus_leucophaeus
ENSSMAG00000012489	si:ch73-63e15.2	100	85.659	ENSMAMG00000018758	si:ch73-63e15.2	100	84.819	Mastacembelus_armatus
ENSSMAG00000012489	si:ch73-63e15.2	99	80.222	ENSMZEG00005010682	si:ch73-63e15.2	100	78.279	Maylandia_zebra
ENSSMAG00000012489	si:ch73-63e15.2	74	72.317	ENSMGAG00000003801	SBNO2	90	72.633	Meleagris_gallopavo
ENSSMAG00000012489	si:ch73-63e15.2	73	68.696	ENSMAUG00000008034	Sbno2	86	67.997	Mesocricetus_auratus
ENSSMAG00000012489	si:ch73-63e15.2	74	67.695	ENSMICG00000013071	SBNO2	88	68.024	Microcebus_murinus
ENSSMAG00000012489	si:ch73-63e15.2	73	68.957	ENSMOCG00000010504	Sbno2	88	66.584	Microtus_ochrogaster
ENSSMAG00000012489	si:ch73-63e15.2	73	70.971	ENSMODG00000005382	SBNO2	89	66.877	Monodelphis_domestica
ENSSMAG00000012489	si:ch73-63e15.2	60	92.593	ENSMALG00000021831	si:ch73-63e15.2	99	92.593	Monopterus_albus
ENSSMAG00000012489	si:ch73-63e15.2	73	68.174	ENSMUSG00000035673	Sbno2	97	66.200	Mus_musculus
ENSSMAG00000012489	si:ch73-63e15.2	73	68.348	MGP_PahariEiJ_G0030976	Sbno2	88	66.200	Mus_pahari
ENSSMAG00000012489	si:ch73-63e15.2	73	68.522	MGP_SPRETEiJ_G0016381	Sbno2	94	66.364	Mus_spretus
ENSSMAG00000012489	si:ch73-63e15.2	63	71.212	ENSMPUG00000008747	SBNO2	91	71.214	Mustela_putorius_furo
ENSSMAG00000012489	si:ch73-63e15.2	73	68.087	ENSNGAG00000004308	Sbno2	87	67.179	Nannospalax_galili
ENSSMAG00000012489	si:ch73-63e15.2	80	89.152	ENSNBRG00000022968	si:ch73-63e15.2	99	89.312	Neolamprologus_brichardi
ENSSMAG00000012489	si:ch73-63e15.2	69	69.031	ENSNLEG00000001305	SBNO2	87	69.031	Nomascus_leucogenys
ENSSMAG00000012489	si:ch73-63e15.2	60	66.454	ENSMEUG00000013511	-	78	66.136	Notamacropus_eugenii
ENSSMAG00000012489	si:ch73-63e15.2	73	67.655	ENSOPRG00000017238	SBNO2	94	67.926	Ochotona_princeps
ENSSMAG00000012489	si:ch73-63e15.2	73	67.101	ENSODEG00000011822	SBNO2	86	66.753	Octodon_degus
ENSSMAG00000012489	si:ch73-63e15.2	99	80.548	ENSONIG00000002490	si:ch73-63e15.2	99	88.349	Oreochromis_niloticus
ENSSMAG00000012489	si:ch73-63e15.2	100	77.914	ENSORLG00000000913	si:ch73-63e15.2	100	77.471	Oryzias_latipes
ENSSMAG00000012489	si:ch73-63e15.2	100	77.849	ENSORLG00020010978	si:ch73-63e15.2	100	77.471	Oryzias_latipes_hni
ENSSMAG00000012489	si:ch73-63e15.2	100	77.721	ENSORLG00015000202	si:ch73-63e15.2	100	77.343	Oryzias_latipes_hsok
ENSSMAG00000012489	si:ch73-63e15.2	100	77.171	ENSOMEG00000000359	si:ch73-63e15.2	100	77.295	Oryzias_melastigma
ENSSMAG00000012489	si:ch73-63e15.2	73	66.580	ENSOARG00000011130	SBNO2	86	66.321	Ovis_aries
ENSSMAG00000012489	si:ch73-63e15.2	74	66.638	ENSPPAG00000032482	SBNO2	90	66.751	Pan_paniscus
ENSSMAG00000012489	si:ch73-63e15.2	74	67.551	ENSPTRG00000010185	SBNO2	88	68.135	Pan_troglodytes
ENSSMAG00000012489	si:ch73-63e15.2	74	64.328	ENSPANG00000009658	SBNO2	88	64.072	Papio_anubis
ENSSMAG00000012489	si:ch73-63e15.2	74	84.266	ENSPKIG00000024201	si:ch73-63e15.2	85	83.163	Paramormyrops_kingsleyae
ENSSMAG00000012489	si:ch73-63e15.2	64	79.163	ENSPKIG00000009707	-	94	72.432	Paramormyrops_kingsleyae
ENSSMAG00000012489	si:ch73-63e15.2	62	73.503	ENSPSIG00000002852	SBNO2	99	73.556	Pelodiscus_sinensis
ENSSMAG00000012489	si:ch73-63e15.2	78	86.118	ENSPMGG00000014375	si:ch73-63e15.2	95	87.351	Periophthalmus_magnuspinnatus
ENSSMAG00000012489	si:ch73-63e15.2	73	66.696	ENSPEMG00000024122	Sbno2	88	65.134	Peromyscus_maniculatus_bairdii
ENSSMAG00000012489	si:ch73-63e15.2	74	70.502	ENSPCIG00000011264	SBNO2	89	67.666	Phascolarctos_cinereus
ENSSMAG00000012489	si:ch73-63e15.2	100	77.160	ENSPFOG00000004096	si:ch73-63e15.2	100	87.639	Poecilia_formosa
ENSSMAG00000012489	si:ch73-63e15.2	100	77.538	ENSPLAG00000014653	si:ch73-63e15.2	100	77.302	Poecilia_latipinna
ENSSMAG00000012489	si:ch73-63e15.2	100	77.305	ENSPMEG00000002129	si:ch73-63e15.2	94	90.761	Poecilia_mexicana
ENSSMAG00000012489	si:ch73-63e15.2	100	77.245	ENSPREG00000006755	si:ch73-63e15.2	100	76.751	Poecilia_reticulata
ENSSMAG00000012489	si:ch73-63e15.2	68	68.156	ENSPCAG00000012256	SBNO2	79	67.970	Procavia_capensis
ENSSMAG00000012489	si:ch73-63e15.2	74	61.709	ENSPCOG00000015216	SBNO2	88	61.742	Propithecus_coquereli
ENSSMAG00000012489	si:ch73-63e15.2	100	80.543	ENSPNYG00000019926	si:ch73-63e15.2	99	79.793	Pundamilia_nyererei
ENSSMAG00000012489	si:ch73-63e15.2	77	81.803	ENSPNAG00000020260	si:ch73-63e15.2	86	81.803	Pygocentrus_nattereri
ENSSMAG00000012489	si:ch73-63e15.2	75	79.898	ENSPNAG00000026609	sbno2a	99	70.356	Pygocentrus_nattereri
ENSSMAG00000012489	si:ch73-63e15.2	73	68.902	ENSRNOG00000013987	Sbno2	89	68.799	Rattus_norvegicus
ENSSMAG00000012489	si:ch73-63e15.2	68	66.636	ENSRBIG00000009740	SBNO2	87	66.358	Rhinopithecus_bieti
ENSSMAG00000012489	si:ch73-63e15.2	65	70.012	ENSRROG00000044671	SBNO2	86	69.654	Rhinopithecus_roxellana
ENSSMAG00000012489	si:ch73-63e15.2	74	67.209	ENSSBOG00000023562	SBNO2	89	67.066	Saimiri_boliviensis_boliviensis
ENSSMAG00000012489	si:ch73-63e15.2	73	71.043	ENSSHAG00000010241	SBNO2	98	70.783	Sarcophilus_harrisii
ENSSMAG00000012489	si:ch73-63e15.2	90	80.308	ENSSFOG00015005861	si:ch73-63e15.2	96	81.719	Scleropages_formosus
ENSSMAG00000012489	si:ch73-63e15.2	100	91.519	ENSSDUG00000003527	si:ch73-63e15.2	100	91.519	Seriola_dumerili
ENSSMAG00000012489	si:ch73-63e15.2	100	91.214	ENSSLDG00000004623	si:ch73-63e15.2	100	91.214	Seriola_lalandi_dorsalis
ENSSMAG00000012489	si:ch73-63e15.2	100	87.041	ENSSPAG00000017717	si:ch73-63e15.2	100	87.814	Stegastes_partitus
ENSSMAG00000012489	si:ch73-63e15.2	74	68.322	ENSSSCG00000030042	SBNO2	90	68.151	Sus_scrofa
ENSSMAG00000012489	si:ch73-63e15.2	71	89.350	ENSTRUG00000018193	si:ch73-63e15.2	86	90.119	Takifugu_rubripes
ENSSMAG00000012489	si:ch73-63e15.2	67	70.275	ENSUAMG00000006568	SBNO2	91	74.298	Ursus_americanus
ENSSMAG00000012489	si:ch73-63e15.2	73	69.331	ENSVVUG00000022823	SBNO2	82	69.171	Vulpes_vulpes
ENSSMAG00000012489	si:ch73-63e15.2	66	74.291	ENSXETG00000021579	sbno2	91	74.494	Xenopus_tropicalis
ENSSMAG00000012489	si:ch73-63e15.2	89	86.604	ENSXCOG00000009209	si:ch73-63e15.2	94	89.503	Xiphophorus_couchianus
ENSSMAG00000012489	si:ch73-63e15.2	100	77.891	ENSXMAG00000012091	si:ch73-63e15.2	91	89.876	Xiphophorus_maculatus