EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSMAG00000012761 (Gene tree)
Gene ID: -
Gene Symbol: tnrc6c1
Alias: fj17e06|si:dkey-54k13.1|unm_sa1472|wu:fj17e06
Full Name: trinucleotide repeat containing 6C1
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Minus strand
Length: 19278 bases
Position: chr19:9728821-9748098
Accession: ZDB-GENE-030131-7440
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000020912	RRM_1	PF00076.22	0.00016	1	1
ENSSMAP00000020817	RRM_1	PF00076.22	0.00017	1	1
ENSSMAP00000020854	RRM_1	PF00076.22	0.00018	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000021068	-	5353	-	ENSSMAP00000020817	1600 (aa)	-	-
ENSSMAT00000021163	-	4674	-	ENSSMAP00000020912	1557 (aa)	-	-
ENSSMAT00000021105	-	5391	-	ENSSMAP00000020854	1698 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000012761's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000012761's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSMAG00000012761	tnrc6c1	100	54.171	ENSSMAG00000015145	tnrc6c2	100	55.543

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000012761	tnrc6c1	99	50.517	ENSG00000078687	TNRC6C	91	58.095	Homo_sapiens
ENSSMAG00000012761	tnrc6c1	100	87.336	ENSAPOG00000019749	tnrc6c1	100	87.617	Acanthochromis_polyacanthus
ENSSMAG00000012761	tnrc6c1	99	48.394	ENSAMEG00000013756	TNRC6C	99	45.928	Ailuropoda_melanoleuca
ENSSMAG00000012761	tnrc6c1	99	74.385	ENSACIG00000008075	tnrc6c1	99	73.458	Amphilophus_citrinellus
ENSSMAG00000012761	tnrc6c1	100	87.219	ENSAOCG00000023968	tnrc6c1	100	87.507	Amphiprion_ocellaris
ENSSMAG00000012761	tnrc6c1	100	87.032	ENSAPEG00000009020	tnrc6c1	100	87.625	Amphiprion_percula
ENSSMAG00000012761	tnrc6c1	99	49.775	ENSAPLG00000005456	TNRC6C	94	46.605	Anas_platyrhynchos
ENSSMAG00000012761	tnrc6c1	99	50.340	ENSACAG00000016198	TNRC6C	92	47.557	Anolis_carolinensis
ENSSMAG00000012761	tnrc6c1	99	50.489	ENSANAG00000021554	TNRC6C	100	48.724	Aotus_nancymaae
ENSSMAG00000012761	tnrc6c1	99	72.000	ENSACLG00000000424	tnrc6c1	99	73.554	Astatotilapia_calliptera
ENSSMAG00000012761	tnrc6c1	84	52.817	ENSBTAG00000018658	TNRC6C	100	48.455	Bos_taurus
ENSSMAG00000012761	tnrc6c1	99	50.403	ENSCJAG00000019431	TNRC6C	100	48.749	Callithrix_jacchus
ENSSMAG00000012761	tnrc6c1	99	49.773	ENSCAFG00000005224	TNRC6C	92	47.379	Canis_familiaris
ENSSMAG00000012761	tnrc6c1	99	50.604	ENSCAFG00020006661	TNRC6C	100	48.091	Canis_lupus_dingo
ENSSMAG00000012761	tnrc6c1	99	50.116	ENSCHIG00000026004	TNRC6C	100	48.247	Capra_hircus
ENSSMAG00000012761	tnrc6c1	99	49.489	ENSTSYG00000005403	TNRC6C	100	47.443	Carlito_syrichta
ENSSMAG00000012761	tnrc6c1	100	44.879	ENSCAPG00000007307	TNRC6C	93	44.632	Cavia_aperea
ENSSMAG00000012761	tnrc6c1	99	47.536	ENSCPOG00000000467	TNRC6C	99	48.230	Cavia_porcellus
ENSSMAG00000012761	tnrc6c1	99	50.575	ENSCCAG00000030524	TNRC6C	100	48.836	Cebus_capucinus
ENSSMAG00000012761	tnrc6c1	99	50.546	ENSCATG00000033135	TNRC6C	100	48.947	Cercocebus_atys
ENSSMAG00000012761	tnrc6c1	99	50.978	ENSCLAG00000011139	TNRC6C	92	48.486	Chinchilla_lanigera
ENSSMAG00000012761	tnrc6c1	99	49.465	ENSCSAG00000005167	TNRC6C	92	47.007	Chlorocebus_sabaeus
ENSSMAG00000012761	tnrc6c1	68	63.846	ENSCHOG00000000088	TNRC6C	66	64.043	Choloepus_hoffmanni
ENSSMAG00000012761	tnrc6c1	99	51.306	ENSCPBG00000027960	TNRC6C	100	49.416	Chrysemys_picta_bellii
ENSSMAG00000012761	tnrc6c1	99	50.661	ENSCANG00000041771	TNRC6C	100	49.058	Colobus_angolensis_palliatus
ENSSMAG00000012761	tnrc6c1	99	50.260	ENSCGRG00001022686	Tnrc6c	100	47.208	Cricetulus_griseus_chok1gshd
ENSSMAG00000012761	tnrc6c1	99	50.436	ENSCGRG00000018041	Tnrc6c	100	47.208	Cricetulus_griseus_crigri
ENSSMAG00000012761	tnrc6c1	100	82.130	ENSCSEG00000012744	tnrc6c1	95	82.097	Cynoglossus_semilaevis
ENSSMAG00000012761	tnrc6c1	94	72.665	ENSDARG00000076847	tnrc6c1	100	59.344	Danio_rerio
ENSSMAG00000012761	tnrc6c1	99	49.309	ENSDNOG00000003247	TNRC6C	96	47.534	Dasypus_novemcinctus
ENSSMAG00000012761	tnrc6c1	99	48.669	ENSDORG00000004558	Tnrc6c	100	46.167	Dipodomys_ordii
ENSSMAG00000012761	tnrc6c1	91	55.114	ENSETEG00000005527	TNRC6C	86	53.917	Echinops_telfairi
ENSSMAG00000012761	tnrc6c1	99	49.971	ENSEASG00005004799	TNRC6C	100	48.529	Equus_asinus_asinus
ENSSMAG00000012761	tnrc6c1	99	49.971	ENSECAG00000012486	TNRC6C	93	47.687	Equus_caballus
ENSSMAG00000012761	tnrc6c1	92	57.248	ENSEEUG00000010008	TNRC6C	91	56.522	Erinaceus_europaeus
ENSSMAG00000012761	tnrc6c1	99	49.740	ENSFCAG00000028358	TNRC6C	100	48.226	Felis_catus
ENSSMAG00000012761	tnrc6c1	99	49.082	ENSFALG00000000848	TNRC6C	100	46.958	Ficedula_albicollis
ENSSMAG00000012761	tnrc6c1	99	51.034	ENSFDAG00000010368	TNRC6C	99	48.846	Fukomys_damarensis
ENSSMAG00000012761	tnrc6c1	100	81.597	ENSFHEG00000002936	tnrc6c1	100	79.689	Fundulus_heteroclitus
ENSSMAG00000012761	tnrc6c1	99	51.656	ENSGALG00000001725	TNRC6C	100	49.333	Gallus_gallus
ENSSMAG00000012761	tnrc6c1	100	81.745	ENSGAFG00000019019	tnrc6c1	100	82.056	Gambusia_affinis
ENSSMAG00000012761	tnrc6c1	100	78.614	ENSGACG00000012320	tnrc6c1	92	77.924	Gasterosteus_aculeatus
ENSSMAG00000012761	tnrc6c1	99	51.943	ENSGAGG00000022043	TNRC6C	100	49.570	Gopherus_agassizii
ENSSMAG00000012761	tnrc6c1	99	50.488	ENSGGOG00000011304	TNRC6C	100	48.808	Gorilla_gorilla
ENSSMAG00000012761	tnrc6c1	100	81.136	ENSHBUG00000010846	tnrc6c1	100	82.074	Haplochromis_burtoni
ENSSMAG00000012761	tnrc6c1	99	50.574	ENSHGLG00000004809	TNRC6C	92	48.174	Heterocephalus_glaber_female
ENSSMAG00000012761	tnrc6c1	99	50.228	ENSHGLG00100012597	TNRC6C	93	47.893	Heterocephalus_glaber_male
ENSSMAG00000012761	tnrc6c1	100	61.603	ENSIPUG00000000818	tnrc6c1	94	60.976	Ictalurus_punctatus
ENSSMAG00000012761	tnrc6c1	85	54.940	ENSSTOG00000009101	TNRC6C	99	48.340	Ictidomys_tridecemlineatus
ENSSMAG00000012761	tnrc6c1	84	54.666	ENSJJAG00000017055	Tnrc6c	93	46.885	Jaculus_jaculus
ENSSMAG00000012761	tnrc6c1	100	76.306	ENSKMAG00000021023	tnrc6c1	100	75.746	Kryptolebias_marmoratus
ENSSMAG00000012761	tnrc6c1	99	47.979	ENSLACG00000015283	TNRC6C	99	46.104	Latimeria_chalumnae
ENSSMAG00000012761	tnrc6c1	96	67.650	ENSLOCG00000013377	tnrc6c1	89	74.636	Lepisosteus_oculatus
ENSSMAG00000012761	tnrc6c1	99	49.827	ENSLAFG00000011122	TNRC6C	99	47.252	Loxodonta_africana
ENSSMAG00000012761	tnrc6c1	99	50.546	ENSMFAG00000043943	TNRC6C	100	48.947	Macaca_fascicularis
ENSSMAG00000012761	tnrc6c1	99	50.546	ENSMMUG00000011924	TNRC6C	100	48.947	Macaca_mulatta
ENSSMAG00000012761	tnrc6c1	99	50.488	ENSMNEG00000030405	TNRC6C	100	48.891	Macaca_nemestrina
ENSSMAG00000012761	tnrc6c1	99	50.546	ENSMLEG00000033436	TNRC6C	100	48.947	Mandrillus_leucophaeus
ENSSMAG00000012761	tnrc6c1	100	85.714	ENSMAMG00000023613	tnrc6c1	100	85.832	Mastacembelus_armatus
ENSSMAG00000012761	tnrc6c1	100	80.997	ENSMZEG00005010920	tnrc6c1	100	80.597	Maylandia_zebra
ENSSMAG00000012761	tnrc6c1	93	67.266	ENSMGAG00000003906	TNRC6C	87	64.748	Meleagris_gallopavo
ENSSMAG00000012761	tnrc6c1	99	50.058	ENSMAUG00000021618	Tnrc6c	96	49.855	Mesocricetus_auratus
ENSSMAG00000012761	tnrc6c1	99	50.373	ENSMICG00000003952	TNRC6C	100	48.975	Microcebus_murinus
ENSSMAG00000012761	tnrc6c1	99	50.261	ENSMOCG00000015879	Tnrc6c	99	47.849	Microtus_ochrogaster
ENSSMAG00000012761	tnrc6c1	99	84.112	ENSMMOG00000005203	tnrc6c1	100	82.611	Mola_mola
ENSSMAG00000012761	tnrc6c1	99	50.955	ENSMODG00000001785	TNRC6C	93	47.567	Monodelphis_domestica
ENSSMAG00000012761	tnrc6c1	99	50.579	MGP_CAROLIEiJ_G0017465	Tnrc6c	99	47.663	Mus_caroli
ENSSMAG00000012761	tnrc6c1	99	50.405	ENSMUSG00000025571	Tnrc6c	99	47.611	Mus_musculus
ENSSMAG00000012761	tnrc6c1	99	50.463	MGP_PahariEiJ_G0018593	Tnrc6c	99	47.824	Mus_pahari
ENSSMAG00000012761	tnrc6c1	99	50.231	MGP_SPRETEiJ_G0018309	Tnrc6c	99	47.450	Mus_spretus
ENSSMAG00000012761	tnrc6c1	99	48.893	ENSMPUG00000013348	TNRC6C	92	46.324	Mustela_putorius_furo
ENSSMAG00000012761	tnrc6c1	99	47.587	ENSMLUG00000014431	TNRC6C	92	45.305	Myotis_lucifugus
ENSSMAG00000012761	tnrc6c1	99	50.260	ENSNGAG00000012203	Tnrc6c	92	47.202	Nannospalax_galili
ENSSMAG00000012761	tnrc6c1	100	81.594	ENSNBRG00000005344	tnrc6c1	100	82.532	Neolamprologus_brichardi
ENSSMAG00000012761	tnrc6c1	99	47.856	ENSNLEG00000000047	TNRC6C	93	45.060	Nomascus_leucogenys
ENSSMAG00000012761	tnrc6c1	95	46.470	ENSMEUG00000005104	TNRC6C	99	45.257	Notamacropus_eugenii
ENSSMAG00000012761	tnrc6c1	99	50.833	ENSODEG00000012499	TNRC6C	100	49.114	Octodon_degus
ENSSMAG00000012761	tnrc6c1	100	82.045	ENSONIG00000002210	tnrc6c1	100	82.617	Oreochromis_niloticus
ENSSMAG00000012761	tnrc6c1	79	53.923	ENSOANG00000009758	-	67	54.147	Ornithorhynchus_anatinus
ENSSMAG00000012761	tnrc6c1	75	59.059	ENSOCUG00000006122	TNRC6C	87	53.997	Oryctolagus_cuniculus
ENSSMAG00000012761	tnrc6c1	100	76.412	ENSORLG00000009837	tnrc6c1	100	83.516	Oryzias_latipes
ENSSMAG00000012761	tnrc6c1	100	76.226	ENSORLG00020016510	tnrc6c1	100	76.598	Oryzias_latipes_hni
ENSSMAG00000012761	tnrc6c1	80	73.221	ENSORLG00015000171	tnrc6c1	99	73.588	Oryzias_latipes_hsok
ENSSMAG00000012761	tnrc6c1	100	78.150	ENSOMEG00000000357	tnrc6c1	100	77.999	Oryzias_melastigma
ENSSMAG00000012761	tnrc6c1	99	48.154	ENSOGAG00000007197	TNRC6C	100	46.982	Otolemur_garnettii
ENSSMAG00000012761	tnrc6c1	94	47.112	ENSOARG00000006041	TNRC6C	92	45.289	Ovis_aries
ENSSMAG00000012761	tnrc6c1	99	50.460	ENSPPAG00000027160	TNRC6C	100	48.863	Pan_paniscus
ENSSMAG00000012761	tnrc6c1	99	49.740	ENSPPRG00000018881	TNRC6C	96	50.145	Panthera_pardus
ENSSMAG00000012761	tnrc6c1	87	57.479	ENSPTIG00000008791	TNRC6C	81	53.964	Panthera_tigris_altaica
ENSSMAG00000012761	tnrc6c1	99	50.517	ENSPTRG00000009699	TNRC6C	100	48.918	Pan_troglodytes
ENSSMAG00000012761	tnrc6c1	99	50.690	ENSPANG00000019994	TNRC6C	100	48.891	Papio_anubis
ENSSMAG00000012761	tnrc6c1	100	56.095	ENSPKIG00000005428	tnrc6c1	100	56.765	Paramormyrops_kingsleyae
ENSSMAG00000012761	tnrc6c1	99	50.756	ENSPSIG00000018069	TNRC6C	99	48.380	Pelodiscus_sinensis
ENSSMAG00000012761	tnrc6c1	93	69.231	ENSPMGG00000022911	tnrc6c1	98	79.184	Periophthalmus_magnuspinnatus
ENSSMAG00000012761	tnrc6c1	99	50.543	ENSPEMG00000009785	Tnrc6c	100	46.086	Peromyscus_maniculatus_bairdii
ENSSMAG00000012761	tnrc6c1	54	39.502	ENSPCIG00000017421	-	99	38.447	Phascolarctos_cinereus
ENSSMAG00000012761	tnrc6c1	100	81.892	ENSPFOG00000012560	tnrc6c1	92	82.059	Poecilia_formosa
ENSSMAG00000012761	tnrc6c1	100	81.829	ENSPLAG00000021055	tnrc6c1	100	82.203	Poecilia_latipinna
ENSSMAG00000012761	tnrc6c1	99	49.549	ENSPPYG00000008679	TNRC6C	91	47.083	Pongo_abelii
ENSSMAG00000012761	tnrc6c1	71	65.541	ENSPCAG00000012510	TNRC6C	93	64.865	Procavia_capensis
ENSSMAG00000012761	tnrc6c1	99	50.434	ENSPCOG00000021451	TNRC6C	100	48.948	Propithecus_coquereli
ENSSMAG00000012761	tnrc6c1	75	62.308	ENSPVAG00000002008	TNRC6C	95	60.769	Pteropus_vampyrus
ENSSMAG00000012761	tnrc6c1	100	80.870	ENSPNYG00000014477	tnrc6c1	100	81.988	Pundamilia_nyererei
ENSSMAG00000012761	tnrc6c1	99	50.087	ENSRNOG00000022395	Tnrc6c	96	49.883	Rattus_norvegicus
ENSSMAG00000012761	tnrc6c1	99	50.603	ENSRBIG00000027777	TNRC6C	100	49.002	Rhinopithecus_bieti
ENSSMAG00000012761	tnrc6c1	99	50.603	ENSRROG00000042912	TNRC6C	100	49.002	Rhinopithecus_roxellana
ENSSMAG00000012761	tnrc6c1	99	49.464	ENSSBOG00000023981	TNRC6C	100	47.466	Saimiri_boliviensis_boliviensis
ENSSMAG00000012761	tnrc6c1	56	62.632	ENSSHAG00000018330	-	99	62.884	Sarcophilus_harrisii
ENSSMAG00000012761	tnrc6c1	94	61.641	ENSSFOG00015004735	-	99	65.051	Scleropages_formosus
ENSSMAG00000012761	tnrc6c1	100	59.417	ENSSFOG00015006475	tnrc6c1	96	59.149	Scleropages_formosus
ENSSMAG00000012761	tnrc6c1	100	89.750	ENSSDUG00000002366	tnrc6c1	98	89.586	Seriola_dumerili
ENSSMAG00000012761	tnrc6c1	100	89.875	ENSSLDG00000025613	tnrc6c1	100	89.812	Seriola_lalandi_dorsalis
ENSSMAG00000012761	tnrc6c1	82	61.475	ENSSARG00000006816	TNRC6C	91	60.905	Sorex_araneus
ENSSMAG00000012761	tnrc6c1	92	47.855	ENSSPUG00000007341	TNRC6C	91	52.910	Sphenodon_punctatus
ENSSMAG00000012761	tnrc6c1	98	87.587	ENSSPAG00000014977	tnrc6c1	98	87.789	Stegastes_partitus
ENSSMAG00000012761	tnrc6c1	99	60.920	ENSSSCG00000034373	TNRC6C	98	48.420	Sus_scrofa
ENSSMAG00000012761	tnrc6c1	99	51.242	ENSTGUG00000007733	TNRC6C	99	48.733	Taeniopygia_guttata
ENSSMAG00000012761	tnrc6c1	100	80.325	ENSTRUG00000011685	tnrc6c1	99	79.270	Takifugu_rubripes
ENSSMAG00000012761	tnrc6c1	100	73.987	ENSTNIG00000005273	tnrc6c1	100	73.840	Tetraodon_nigroviridis
ENSSMAG00000012761	tnrc6c1	68	51.354	ENSTBEG00000005046	TNRC6C	99	50.587	Tupaia_belangeri
ENSSMAG00000012761	tnrc6c1	99	50.492	ENSTTRG00000010828	TNRC6C	99	48.385	Tursiops_truncatus
ENSSMAG00000012761	tnrc6c1	99	48.635	ENSUMAG00000013614	TNRC6C	94	46.357	Ursus_maritimus
ENSSMAG00000012761	tnrc6c1	55	51.150	ENSVPAG00000006765	-	95	52.288	Vicugna_pacos
ENSSMAG00000012761	tnrc6c1	99	50.954	ENSVVUG00000015268	TNRC6C	100	49.416	Vulpes_vulpes
ENSSMAG00000012761	tnrc6c1	99	51.075	ENSXETG00000019470	tnrc6c	99	48.893	Xenopus_tropicalis
ENSSMAG00000012761	tnrc6c1	100	81.807	ENSXMAG00000025971	tnrc6c1	100	82.181	Xiphophorus_maculatus