EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSMAG00000013059 (Gene tree)
Gene ID: -
Gene Symbol: smg5
Alias: zgc:113841
Full Name: SMG5 nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Minus strand
Length: 18710 bases
Position: chr16:16111579-16130288
Accession: ZDB-GENE-050913-144
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000021374	EST1	PF10374.9	3.8e-24	1	1
ENSSMAP00000021408	EST1	PF10374.9	3.8e-20	1	1
ENSSMAP00000021374	EST1_DNA_bind	PF10373.9	2.1e-39	1	1
ENSSMAP00000021408	EST1_DNA_bind	PF10373.9	1.2e-33	1	1
ENSSMAP00000021374	PIN_4	PF13638.6	7.1e-07	1	1
ENSSMAP00000021408	PIN_4	PF13638.6	1.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000021626	-	5511	-	ENSSMAP00000021374	1121 (aa)	-	A0A2U9CIQ0
ENSSMAT00000021663	-	5421	-	ENSSMAP00000021408	1091 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000013059's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000013059's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000013059	smg5	99	62.333	ENSG00000198952	SMG5	99	60.781	Homo_sapiens
ENSSMAG00000013059	smg5	100	92.819	ENSAPOG00000019690	smg5	100	92.642	Acanthochromis_polyacanthus
ENSSMAG00000013059	smg5	91	77.171	ENSAMEG00000014458	SMG5	91	76.675	Ailuropoda_melanoleuca
ENSSMAG00000013059	smg5	100	82.562	ENSACIG00000001353	smg5	99	82.740	Amphilophus_citrinellus
ENSSMAG00000013059	smg5	100	93.060	ENSAOCG00000019483	smg5	100	92.794	Amphiprion_ocellaris
ENSSMAG00000013059	smg5	100	93.060	ENSAPEG00000022949	smg5	100	92.794	Amphiprion_percula
ENSSMAG00000013059	smg5	100	90.409	ENSATEG00000005348	smg5	100	90.400	Anabas_testudineus
ENSSMAG00000013059	smg5	98	63.450	ENSAPLG00000010263	SMG5	100	62.050	Anas_platyrhynchos
ENSSMAG00000013059	smg5	99	62.210	ENSANAG00000032899	SMG5	99	60.904	Aotus_nancymaae
ENSSMAG00000013059	smg5	100	89.548	ENSACLG00000009311	smg5	100	89.096	Astatotilapia_calliptera
ENSSMAG00000013059	smg5	100	79.359	ENSAMXG00000024616	smg5	100	79.022	Astyanax_mexicanus
ENSSMAG00000013059	smg5	99	61.710	ENSBTAG00000009435	SMG5	92	71.628	Bos_taurus
ENSSMAG00000013059	smg5	90	49.512	ENSBTAG00000021747	-	85	49.272	Bos_taurus
ENSSMAG00000013059	smg5	99	62.121	ENSCJAG00000005684	SMG5	99	60.816	Callithrix_jacchus
ENSSMAG00000013059	smg5	99	60.197	ENSCAFG00000016839	SMG5	92	76.157	Canis_familiaris
ENSSMAG00000013059	smg5	99	60.197	ENSCAFG00020006061	SMG5	92	76.157	Canis_lupus_dingo
ENSSMAG00000013059	smg5	85	49.751	ENSCHIG00000006323	-	93	49.630	Capra_hircus
ENSSMAG00000013059	smg5	99	61.854	ENSTSYG00000004099	SMG5	99	60.657	Carlito_syrichta
ENSSMAG00000013059	smg5	88	56.889	ENSCAPG00000003631	SMG5	91	57.778	Cavia_aperea
ENSSMAG00000013059	smg5	99	62.389	ENSCPOG00000015696	SMG5	99	60.973	Cavia_porcellus
ENSSMAG00000013059	smg5	99	62.333	ENSCCAG00000027409	SMG5	99	60.904	Cebus_capucinus
ENSSMAG00000013059	smg5	99	62.511	ENSCATG00000030539	SMG5	99	60.816	Cercocebus_atys
ENSSMAG00000013059	smg5	99	61.888	ENSCLAG00000003983	SMG5	99	60.515	Chinchilla_lanigera
ENSSMAG00000013059	smg5	99	62.511	ENSCSAG00000002120	SMG5	99	60.816	Chlorocebus_sabaeus
ENSSMAG00000013059	smg5	51	75.812	ENSCHOG00000008741	-	57	75.812	Choloepus_hoffmanni
ENSSMAG00000013059	smg5	94	62.384	ENSCPBG00000025848	SMG5	100	61.116	Chrysemys_picta_bellii
ENSSMAG00000013059	smg5	75	38.806	ENSCING00000008706	-	83	39.055	Ciona_intestinalis
ENSSMAG00000013059	smg5	99	59.626	ENSCANG00000029208	SMG5	99	58.688	Colobus_angolensis_palliatus
ENSSMAG00000013059	smg5	99	61.922	ENSCGRG00001006336	Smg5	99	60.641	Cricetulus_griseus_chok1gshd
ENSSMAG00000013059	smg5	98	61.754	ENSCGRG00000005111	Smg5	100	60.417	Cricetulus_griseus_crigri
ENSSMAG00000013059	smg5	100	87.200	ENSCSEG00000014220	smg5	100	86.655	Cynoglossus_semilaevis
ENSSMAG00000013059	smg5	100	73.200	ENSCVAG00000000529	smg5	99	73.473	Cyprinodon_variegatus
ENSSMAG00000013059	smg5	100	77.837	ENSDARG00000041481	smg5	100	77.236	Danio_rerio
ENSSMAG00000013059	smg5	99	59.626	ENSDNOG00000000051	SMG5	99	58.119	Dasypus_novemcinctus
ENSSMAG00000013059	smg5	77	39.560	ENSDNOG00000039862	-	86	39.560	Dasypus_novemcinctus
ENSSMAG00000013059	smg5	99	62.299	ENSDORG00000010382	Smg5	99	60.230	Dipodomys_ordii
ENSSMAG00000013059	smg5	75	85.437	ENSETEG00000010336	SMG5	81	85.437	Echinops_telfairi
ENSSMAG00000013059	smg5	99	61.586	ENSEASG00005019122	SMG5	99	60.993	Equus_asinus_asinus
ENSSMAG00000013059	smg5	66	78.873	ENSEEUG00000012690	SMG5	75	77.465	Erinaceus_europaeus
ENSSMAG00000013059	smg5	100	82.935	ENSELUG00000012585	smg5	100	81.399	Esox_lucius
ENSSMAG00000013059	smg5	99	61.091	ENSFCAG00000011783	SMG5	99	60.143	Felis_catus
ENSSMAG00000013059	smg5	59	63.744	ENSFALG00000001166	-	96	61.218	Ficedula_albicollis
ENSSMAG00000013059	smg5	98	61.328	ENSFDAG00000017388	SMG5	100	60.631	Fukomys_damarensis
ENSSMAG00000013059	smg5	98	76.833	ENSFHEG00000013939	smg5	94	88.571	Fundulus_heteroclitus
ENSSMAG00000013059	smg5	100	77.408	ENSGMOG00000007310	smg5	100	77.778	Gadus_morhua
ENSSMAG00000013059	smg5	99	63.790	ENSGALG00000029918	-	99	61.470	Gallus_gallus
ENSSMAG00000013059	smg5	92	88.818	ENSGAFG00000021691	smg5	99	88.818	Gambusia_affinis
ENSSMAG00000013059	smg5	100	86.914	ENSGACG00000013142	smg5	100	85.991	Gasterosteus_aculeatus
ENSSMAG00000013059	smg5	99	63.869	ENSGAGG00000016131	SMG5	99	61.972	Gopherus_agassizii
ENSSMAG00000013059	smg5	99	62.121	ENSGGOG00000010932	SMG5	99	60.781	Gorilla_gorilla
ENSSMAG00000013059	smg5	100	89.362	ENSHBUG00000008654	smg5	100	89.441	Haplochromis_burtoni
ENSSMAG00000013059	smg5	99	61.285	ENSHGLG00000019152	SMG5	92	71.163	Heterocephalus_glaber_female
ENSSMAG00000013059	smg5	91	61.788	ENSHGLG00100015948	SMG5	90	71.362	Heterocephalus_glaber_male
ENSSMAG00000013059	smg5	86	78.194	ENSHCOG00000010229	smg5	97	77.974	Hippocampus_comes
ENSSMAG00000013059	smg5	100	77.699	ENSIPUG00000006624	Smg5	100	77.285	Ictalurus_punctatus
ENSSMAG00000013059	smg5	99	62.032	ENSSTOG00000001780	SMG5	99	58.044	Ictidomys_tridecemlineatus
ENSSMAG00000013059	smg5	99	61.668	ENSJJAG00000022763	Smg5	99	61.525	Jaculus_jaculus
ENSSMAG00000013059	smg5	100	88.178	ENSKMAG00000014586	smg5	100	88.089	Kryptolebias_marmoratus
ENSSMAG00000013059	smg5	100	89.502	ENSLBEG00000002145	smg5	100	89.858	Labrus_bergylta
ENSSMAG00000013059	smg5	99	56.941	ENSLACG00000010521	SMG5	99	56.372	Latimeria_chalumnae
ENSSMAG00000013059	smg5	100	69.238	ENSLOCG00000008380	smg5	99	73.228	Lepisosteus_oculatus
ENSSMAG00000013059	smg5	99	61.429	ENSLAFG00000006241	SMG5	99	60.997	Loxodonta_africana
ENSSMAG00000013059	smg5	99	62.511	ENSMFAG00000045357	SMG5	99	60.816	Macaca_fascicularis
ENSSMAG00000013059	smg5	93	78.353	ENSMMUG00000000090	SMG5	93	76.744	Macaca_mulatta
ENSSMAG00000013059	smg5	99	62.422	ENSMNEG00000044425	SMG5	99	60.727	Macaca_nemestrina
ENSSMAG00000013059	smg5	99	57.587	ENSMLEG00000041192	SMG5	99	55.919	Mandrillus_leucophaeus
ENSSMAG00000013059	smg5	100	90.311	ENSMAMG00000010683	smg5	100	90.480	Mastacembelus_armatus
ENSSMAG00000013059	smg5	100	79.469	ENSMZEG00005015815	smg5	99	78.742	Maylandia_zebra
ENSSMAG00000013059	smg5	68	76.081	ENSMZEG00005016543	smg5	100	74.966	Maylandia_zebra
ENSSMAG00000013059	smg5	99	60.765	ENSMAUG00000010381	Smg5	99	60.924	Mesocricetus_auratus
ENSSMAG00000013059	smg5	92	78.673	ENSMICG00000002257	SMG5	99	60.498	Microcebus_murinus
ENSSMAG00000013059	smg5	99	60.978	ENSMOCG00000016590	Smg5	99	60.638	Microtus_ochrogaster
ENSSMAG00000013059	smg5	100	84.929	ENSMMOG00000017199	smg5	100	84.663	Mola_mola
ENSSMAG00000013059	smg5	69	34.884	ENSMODG00000004511	-	77	34.884	Monodelphis_domestica
ENSSMAG00000013059	smg5	69	35.040	ENSMODG00000004735	-	86	35.040	Monodelphis_domestica
ENSSMAG00000013059	smg5	71	33.590	ENSMODG00000010675	-	90	34.103	Monodelphis_domestica
ENSSMAG00000013059	smg5	71	34.568	ENSMODG00000004532	-	86	34.568	Monodelphis_domestica
ENSSMAG00000013059	smg5	88	60.381	ENSMODG00000016901	SMG5	98	60.883	Monodelphis_domestica
ENSSMAG00000013059	smg5	100	88.800	ENSMALG00000010375	smg5	100	87.811	Monopterus_albus
ENSSMAG00000013059	smg5	99	61.388	MGP_CAROLIEiJ_G0025163	Smg5	100	88.268	Mus_caroli
ENSSMAG00000013059	smg5	99	61.210	ENSMUSG00000001415	Smg5	99	88.268	Mus_musculus
ENSSMAG00000013059	smg5	99	61.477	MGP_PahariEiJ_G0026606	Smg5	100	88.827	Mus_pahari
ENSSMAG00000013059	smg5	99	61.210	MGP_SPRETEiJ_G0026104	Smg5	100	88.268	Mus_spretus
ENSSMAG00000013059	smg5	87	76.731	ENSMPUG00000004546	SMG5	93	74.731	Mustela_putorius_furo
ENSSMAG00000013059	smg5	99	61.676	ENSMLUG00000008518	SMG5	92	76.977	Myotis_lucifugus
ENSSMAG00000013059	smg5	99	62.155	ENSNGAG00000020706	Smg5	99	60.482	Nannospalax_galili
ENSSMAG00000013059	smg5	78	49.015	ENSNGAG00000012101	-	92	48.411	Nannospalax_galili
ENSSMAG00000013059	smg5	97	75.849	ENSNBRG00000004332	smg5	97	76.125	Neolamprologus_brichardi
ENSSMAG00000013059	smg5	99	62.422	ENSNLEG00000012439	SMG5	99	60.870	Nomascus_leucogenys
ENSSMAG00000013059	smg5	99	60.213	ENSMEUG00000012834	SMG5	99	59.858	Notamacropus_eugenii
ENSSMAG00000013059	smg5	99	62.533	ENSOPRG00000009152	SMG5	99	61.327	Ochotona_princeps
ENSSMAG00000013059	smg5	99	61.219	ENSODEG00000012237	SMG5	99	61.456	Octodon_degus
ENSSMAG00000013059	smg5	100	89.086	ENSONIG00000008632	smg5	100	89.076	Oreochromis_niloticus
ENSSMAG00000013059	smg5	98	61.608	ENSOCUG00000012886	SMG5	100	60.360	Oryctolagus_cuniculus
ENSSMAG00000013059	smg5	78	43.571	ENSOCUG00000023338	-	88	43.571	Oryctolagus_cuniculus
ENSSMAG00000013059	smg5	100	84.164	ENSORLG00000016239	smg5	100	84.431	Oryzias_latipes
ENSSMAG00000013059	smg5	100	84.725	ENSORLG00020013127	smg5	100	84.609	Oryzias_latipes_hni
ENSSMAG00000013059	smg5	100	83.897	ENSORLG00015019014	smg5	100	84.431	Oryzias_latipes_hsok
ENSSMAG00000013059	smg5	84	84.199	ENSOMEG00000021330	smg5	92	84.093	Oryzias_melastigma
ENSSMAG00000013059	smg5	92	76.905	ENSOGAG00000004966	SMG5	92	71.963	Otolemur_garnettii
ENSSMAG00000013059	smg5	86	50.000	ENSOARG00000011963	-	93	50.000	Ovis_aries
ENSSMAG00000013059	smg5	93	78.454	ENSOARG00000005778	SMG5	92	76.977	Ovis_aries
ENSSMAG00000013059	smg5	99	62.333	ENSPPAG00000011996	SMG5	99	60.781	Pan_paniscus
ENSSMAG00000013059	smg5	91	78.218	ENSPPRG00000011901	SMG5	93	75.845	Panthera_pardus
ENSSMAG00000013059	smg5	90	75.931	ENSPTIG00000007892	SMG5	98	56.216	Panthera_tigris_altaica
ENSSMAG00000013059	smg5	99	62.333	ENSPTRG00000023925	SMG5	99	60.781	Pan_troglodytes
ENSSMAG00000013059	smg5	86	78.090	ENSPTRG00000049282	-	99	60.781	Pan_troglodytes
ENSSMAG00000013059	smg5	99	62.511	ENSPANG00000011201	SMG5	99	60.816	Papio_anubis
ENSSMAG00000013059	smg5	100	76.690	ENSPKIG00000009402	smg5	100	76.533	Paramormyrops_kingsleyae
ENSSMAG00000013059	smg5	98	64.209	ENSPSIG00000015198	SMG5	100	62.138	Pelodiscus_sinensis
ENSSMAG00000013059	smg5	100	73.268	ENSPMGG00000010465	smg5	100	72.395	Periophthalmus_magnuspinnatus
ENSSMAG00000013059	smg5	84	62.162	ENSPMAG00000000410	smg5	99	46.522	Petromyzon_marinus
ENSSMAG00000013059	smg5	99	61.374	ENSPCIG00000018938	SMG5	99	60.749	Phascolarctos_cinereus
ENSSMAG00000013059	smg5	100	86.364	ENSPFOG00000010191	smg5	100	86.441	Poecilia_formosa
ENSSMAG00000013059	smg5	100	86.262	ENSPLAG00000009332	smg5	100	86.619	Poecilia_latipinna
ENSSMAG00000013059	smg5	100	86.542	ENSPMEG00000014105	smg5	100	86.530	Poecilia_mexicana
ENSSMAG00000013059	smg5	100	86.619	ENSPREG00000017713	smg5	100	86.887	Poecilia_reticulata
ENSSMAG00000013059	smg5	99	62.422	ENSPPYG00000000723	SMG5	99	60.870	Pongo_abelii
ENSSMAG00000013059	smg5	77	79.444	ENSPCAG00000008412	SMG5	81	79.444	Procavia_capensis
ENSSMAG00000013059	smg5	92	78.910	ENSPCOG00000004741	SMG5	99	60.622	Propithecus_coquereli
ENSSMAG00000013059	smg5	93	65.035	ENSPVAG00000016748	SMG5	99	54.578	Pteropus_vampyrus
ENSSMAG00000013059	smg5	100	89.134	ENSPNYG00000013397	smg5	100	89.036	Pundamilia_nyererei
ENSSMAG00000013059	smg5	100	79.590	ENSPNAG00000028363	smg5	100	79.341	Pygocentrus_nattereri
ENSSMAG00000013059	smg5	99	62.389	ENSRBIG00000027428	SMG5	99	60.816	Rhinopithecus_bieti
ENSSMAG00000013059	smg5	99	62.299	ENSRROG00000030035	SMG5	99	60.727	Rhinopithecus_roxellana
ENSSMAG00000013059	smg5	99	62.422	ENSSBOG00000033339	SMG5	99	60.993	Saimiri_boliviensis_boliviensis
ENSSMAG00000013059	smg5	50	36.317	ENSSHAG00000000935	-	81	36.573	Sarcophilus_harrisii
ENSSMAG00000013059	smg5	69	36.829	ENSSHAG00000000561	-	88	36.573	Sarcophilus_harrisii
ENSSMAG00000013059	smg5	70	40.831	ENSSHAG00000009572	-	79	40.831	Sarcophilus_harrisii
ENSSMAG00000013059	smg5	98	60.306	ENSSHAG00000014163	SMG5	100	60.306	Sarcophilus_harrisii
ENSSMAG00000013059	smg5	100	76.011	ENSSFOG00015024175	smg5	100	76.752	Scleropages_formosus
ENSSMAG00000013059	smg5	100	93.717	ENSSDUG00000007122	smg5	100	93.717	Seriola_dumerili
ENSSMAG00000013059	smg5	100	93.250	ENSSLDG00000011418	smg5	100	94.227	Seriola_lalandi_dorsalis
ENSSMAG00000013059	smg5	80	87.586	ENSSARG00000012484	SMG5	85	87.586	Sorex_araneus
ENSSMAG00000013059	smg5	94	61.517	ENSSPUG00000002260	SMG5	100	60.688	Sphenodon_punctatus
ENSSMAG00000013059	smg5	100	91.940	ENSSPAG00000014266	smg5	100	92.028	Stegastes_partitus
ENSSMAG00000013059	smg5	99	47.904	ENSSSCG00000039308	-	99	47.111	Sus_scrofa
ENSSMAG00000013059	smg5	99	61.586	ENSSSCG00000006490	-	100	60.000	Sus_scrofa
ENSSMAG00000013059	smg5	99	63.102	ENSTGUG00000003748	-	99	61.313	Taeniopygia_guttata
ENSSMAG00000013059	smg5	100	81.665	ENSTRUG00000012580	smg5	100	81.311	Takifugu_rubripes
ENSSMAG00000013059	smg5	100	81.041	ENSTNIG00000010303	smg5	100	80.053	Tetraodon_nigroviridis
ENSSMAG00000013059	smg5	52	84.236	ENSTBEG00000002777	SMG5	58	84.236	Tupaia_belangeri
ENSSMAG00000013059	smg5	99	58.645	ENSTTRG00000001401	SMG5	99	57.156	Tursiops_truncatus
ENSSMAG00000013059	smg5	92	76.429	ENSUAMG00000013721	SMG5	92	75.638	Ursus_americanus
ENSSMAG00000013059	smg5	91	74.568	ENSUMAG00000018041	SMG5	95	72.494	Ursus_maritimus
ENSSMAG00000013059	smg5	92	70.792	ENSVPAG00000009446	SMG5	99	53.707	Vicugna_pacos
ENSSMAG00000013059	smg5	99	61.449	ENSVVUG00000005887	SMG5	92	76.157	Vulpes_vulpes
ENSSMAG00000013059	smg5	81	54.709	ENSXETG00000033791	SMG5	99	52.744	Xenopus_tropicalis
ENSSMAG00000013059	smg5	92	89.189	ENSXCOG00000004379	smg5	100	89.189	Xiphophorus_couchianus
ENSSMAG00000013059	smg5	100	86.173	ENSXMAG00000013499	smg5	100	86.441	Xiphophorus_maculatus