EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSMAG00000013090 (Gene tree)
Gene ID: -
Gene Symbol: rbfox1l
Alias: Fox-1|ZFmu1A11s|a2bp1l|hm:zeh0082|zeh0082
Full Name: RNA binding fox-1 homolog 1%2C like
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Minus strand
Length: 11213 bases
Position: chr1:18480289-18491501
Accession: ZDB-GENE-040923-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000021394	Fox-1_C	PF12414.8	4.7e-34	1	1
ENSSMAP00000021415	Fox-1_C	PF12414.8	5.3e-34	1	1
ENSSMAP00000021415	RRM_1	PF00076.22	6.5e-18	1	1
ENSSMAP00000021394	RRM_1	PF00076.22	7e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000021648	-	1510	-	ENSSMAP00000021394	382 (aa)	-	-
ENSSMAT00000021668	-	1113	-	ENSSMAP00000021415	370 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000013090's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000013090's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSMAG00000013090	rbfox1l	66	73.171	ENSSMAG00000012618	rbfox3b	75	55.556
ENSSMAG00000013090	rbfox1l	96	48.578	ENSSMAG00000015505	rbfox1	95	52.846
ENSSMAG00000013090	rbfox1l	65	65.385	ENSSMAG00000013662	rbfox2	79	53.927
ENSSMAG00000013090	rbfox1l	65	62.030	ENSSMAG00000004317	-	63	61.654
ENSSMAG00000013090	rbfox1l	62	71.739	ENSSMAG00000019052	-	71	72.174

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000013090	rbfox1l	97	88.949	ENSAPOG00000016304	rbfox1l	98	88.410	Acanthochromis_polyacanthus
ENSSMAG00000013090	rbfox1l	100	82.507	ENSACIG00000006441	rbfox1l	100	82.507	Amphilophus_citrinellus
ENSSMAG00000013090	rbfox1l	91	85.799	ENSAOCG00000020938	rbfox1l	100	84.911	Amphiprion_ocellaris
ENSSMAG00000013090	rbfox1l	100	89.817	ENSAPEG00000008232	rbfox1l	100	89.295	Amphiprion_percula
ENSSMAG00000013090	rbfox1l	100	86.945	ENSATEG00000022649	rbfox1l	100	86.945	Anabas_testudineus
ENSSMAG00000013090	rbfox1l	66	72.332	ENSACAG00000011931	-	91	72.727	Anolis_carolinensis
ENSSMAG00000013090	rbfox1l	100	88.140	ENSACLG00000021394	rbfox1l	100	87.728	Astatotilapia_calliptera
ENSSMAG00000013090	rbfox1l	100	84.974	ENSAMXG00000010470	rbfox1l	100	83.938	Astyanax_mexicanus
ENSSMAG00000013090	rbfox1l	100	55.844	ENSCPBG00000010944	-	100	58.031	Chrysemys_picta_bellii
ENSSMAG00000013090	rbfox1l	100	88.281	ENSCSEG00000018898	rbfox1l	100	89.062	Cynoglossus_semilaevis
ENSSMAG00000013090	rbfox1l	100	87.467	ENSCVAG00000007986	rbfox1l	100	87.206	Cyprinodon_variegatus
ENSSMAG00000013090	rbfox1l	100	83.938	ENSDARG00000021184	rbfox1l	100	84.197	Danio_rerio
ENSSMAG00000013090	rbfox1l	100	82.188	ENSELUG00000015077	rbfox1l	100	83.969	Esox_lucius
ENSSMAG00000013090	rbfox1l	100	62.924	ENSFHEG00000016557	rbfox1l	95	97.561	Fundulus_heteroclitus
ENSSMAG00000013090	rbfox1l	100	85.117	ENSGMOG00000005040	rbfox1l	100	85.117	Gadus_morhua
ENSSMAG00000013090	rbfox1l	97	85.515	ENSGAFG00000013211	rbfox1l	99	85.515	Gambusia_affinis
ENSSMAG00000013090	rbfox1l	100	89.817	ENSGACG00000010757	rbfox1l	100	89.817	Gasterosteus_aculeatus
ENSSMAG00000013090	rbfox1l	66	70.683	ENSGAGG00000012440	-	86	72.400	Gopherus_agassizii
ENSSMAG00000013090	rbfox1l	100	87.728	ENSHBUG00000013406	rbfox1l	100	87.728	Haplochromis_burtoni
ENSSMAG00000013090	rbfox1l	100	85.156	ENSHCOG00000020771	rbfox1l	100	86.198	Hippocampus_comes
ENSSMAG00000013090	rbfox1l	99	78.534	ENSIPUG00000000065	rbfox1l	99	78.771	Ictalurus_punctatus
ENSSMAG00000013090	rbfox1l	100	86.234	ENSKMAG00000005146	rbfox1l	100	86.753	Kryptolebias_marmoratus
ENSSMAG00000013090	rbfox1l	100	92.950	ENSLBEG00000017089	rbfox1l	100	92.950	Labrus_bergylta
ENSSMAG00000013090	rbfox1l	100	89.556	ENSMAMG00000019480	rbfox1l	100	89.556	Mastacembelus_armatus
ENSSMAG00000013090	rbfox1l	100	87.728	ENSMZEG00005016374	rbfox1l	100	87.728	Maylandia_zebra
ENSSMAG00000013090	rbfox1l	100	87.990	ENSMMOG00000016530	rbfox1l	100	87.990	Mola_mola
ENSSMAG00000013090	rbfox1l	100	86.423	ENSMALG00000009384	rbfox1l	100	86.423	Monopterus_albus
ENSSMAG00000013090	rbfox1l	100	86.945	ENSNBRG00000003346	rbfox1l	100	86.945	Neolamprologus_brichardi
ENSSMAG00000013090	rbfox1l	100	88.512	ENSONIG00000012754	rbfox1l	100	88.512	Oreochromis_niloticus
ENSSMAG00000013090	rbfox1l	100	86.945	ENSORLG00000011269	rbfox1l	100	86.423	Oryzias_latipes
ENSSMAG00000013090	rbfox1l	100	87.206	ENSORLG00020000162	rbfox1l	100	86.684	Oryzias_latipes_hni
ENSSMAG00000013090	rbfox1l	100	87.206	ENSORLG00015013464	rbfox1l	100	86.684	Oryzias_latipes_hsok
ENSSMAG00000013090	rbfox1l	100	87.467	ENSOMEG00000010584	rbfox1l	100	86.945	Oryzias_melastigma
ENSSMAG00000013090	rbfox1l	100	86.458	ENSPKIG00000012029	rbfox1l	100	85.938	Paramormyrops_kingsleyae
ENSSMAG00000013090	rbfox1l	100	79.948	ENSPMGG00000012082	rbfox1l	100	79.948	Periophthalmus_magnuspinnatus
ENSSMAG00000013090	rbfox1l	100	87.435	ENSPFOG00000009338	rbfox1l	100	87.435	Poecilia_formosa
ENSSMAG00000013090	rbfox1l	88	80.061	ENSPLAG00000012816	rbfox1l	99	80.061	Poecilia_latipinna
ENSSMAG00000013090	rbfox1l	100	82.723	ENSPMEG00000017597	rbfox1l	100	82.461	Poecilia_mexicana
ENSSMAG00000013090	rbfox1l	100	82.984	ENSPREG00000007940	rbfox1l	100	82.723	Poecilia_reticulata
ENSSMAG00000013090	rbfox1l	100	87.467	ENSPNYG00000002098	rbfox1l	100	87.467	Pundamilia_nyererei
ENSSMAG00000013090	rbfox1l	100	81.137	ENSPNAG00000001620	rbfox1l	100	81.395	Pygocentrus_nattereri
ENSSMAG00000013090	rbfox1l	100	82.078	ENSSFOG00015000675	rbfox1l	100	82.857	Scleropages_formosus
ENSSMAG00000013090	rbfox1l	100	88.432	ENSSDUG00000008705	rbfox1l	100	88.175	Seriola_dumerili
ENSSMAG00000013090	rbfox1l	100	88.918	ENSSLDG00000022256	rbfox1l	100	88.660	Seriola_lalandi_dorsalis
ENSSMAG00000013090	rbfox1l	100	89.295	ENSSPAG00000016620	rbfox1l	100	88.773	Stegastes_partitus
ENSSMAG00000013090	rbfox1l	96	85.135	ENSTRUG00000015905	rbfox1l	100	85.135	Takifugu_rubripes
ENSSMAG00000013090	rbfox1l	67	81.041	ENSTNIG00000008088	rbfox1l	99	83.582	Tetraodon_nigroviridis
ENSSMAG00000013090	rbfox1l	100	87.696	ENSXMAG00000023471	rbfox1l	100	87.696	Xiphophorus_maculatus