EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSMAG00000013271 (Gene tree)
Gene ID: -
Gene Symbol: a1cf
Alias: acf
Full Name: apobec1 complementation factor
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Minus strand
Length: 10640 bases
Position: chr18:21183774-21194413
Accession: ZDB-GENE-060824-3
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000021692	DND1_DSRM	PF14709.7	2.2e-26	1	1
ENSSMAP00000021692	RRM_1	PF00076.22	5e-41	1	3
ENSSMAP00000021692	RRM_1	PF00076.22	5e-41	2	3
ENSSMAP00000021692	RRM_1	PF00076.22	5e-41	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000021946	-	6024	-	ENSSMAP00000021692	611 (aa)	-	A0A2U9CNR7

Gene Model

Click here to download ENSSMAG00000013271's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000013271's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSMAG00000013271	a1cf	64	62.457	ENSSMAG00000017042	rbm46	87	62.457
ENSSMAG00000013271	a1cf	90	51.718	ENSSMAG00000009744	rbm47	63	66.077

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000013271	a1cf	100	75.407	ENSG00000148584	A1CF	100	86.634	Homo_sapiens
ENSSMAG00000013271	a1cf	100	83.546	ENSAPOG00000008259	a1cf	100	82.907	Acanthochromis_polyacanthus
ENSSMAG00000013271	a1cf	100	73.941	ENSAMEG00000000523	A1CF	100	74.267	Ailuropoda_melanoleuca
ENSSMAG00000013271	a1cf	100	87.439	ENSACIG00000008632	a1cf	100	89.070	Amphilophus_citrinellus
ENSSMAG00000013271	a1cf	100	86.201	ENSAOCG00000023744	a1cf	97	88.034	Amphiprion_ocellaris
ENSSMAG00000013271	a1cf	100	87.500	ENSAPEG00000009537	a1cf	100	85.714	Amphiprion_percula
ENSSMAG00000013271	a1cf	100	89.610	ENSATEG00000013720	a1cf	100	90.097	Anabas_testudineus
ENSSMAG00000013271	a1cf	100	75.896	ENSAPLG00000002964	A1CF	100	75.570	Anas_platyrhynchos
ENSSMAG00000013271	a1cf	100	75.407	ENSACAG00000015269	A1CF	100	75.081	Anolis_carolinensis
ENSSMAG00000013271	a1cf	100	74.919	ENSANAG00000019974	A1CF	100	74.593	Aotus_nancymaae
ENSSMAG00000013271	a1cf	100	85.155	ENSACLG00000017428	a1cf	100	86.297	Astatotilapia_calliptera
ENSSMAG00000013271	a1cf	100	76.214	ENSAMXG00000018180	a1cf	100	75.566	Astyanax_mexicanus
ENSSMAG00000013271	a1cf	100	74.919	ENSBTAG00000021195	A1CF	100	74.756	Bos_taurus
ENSSMAG00000013271	a1cf	100	75.896	ENSCJAG00000005045	A1CF	100	75.570	Callithrix_jacchus
ENSSMAG00000013271	a1cf	100	75.244	ENSCAFG00000015581	A1CF	100	74.593	Canis_familiaris
ENSSMAG00000013271	a1cf	100	75.244	ENSCAFG00020026421	A1CF	98	82.274	Canis_lupus_dingo
ENSSMAG00000013271	a1cf	100	76.221	ENSCHIG00000020411	A1CF	100	76.059	Capra_hircus
ENSSMAG00000013271	a1cf	94	76.207	ENSTSYG00000001755	A1CF	100	74.828	Carlito_syrichta
ENSSMAG00000013271	a1cf	100	72.700	ENSCAPG00000017386	A1CF	100	72.404	Cavia_aperea
ENSSMAG00000013271	a1cf	100	74.756	ENSCPOG00000009807	A1CF	100	74.430	Cavia_porcellus
ENSSMAG00000013271	a1cf	100	75.733	ENSCCAG00000018168	A1CF	100	75.407	Cebus_capucinus
ENSSMAG00000013271	a1cf	100	74.430	ENSCATG00000043715	A1CF	100	74.104	Cercocebus_atys
ENSSMAG00000013271	a1cf	100	75.407	ENSCLAG00000010424	A1CF	100	74.430	Chinchilla_lanigera
ENSSMAG00000013271	a1cf	100	75.733	ENSCSAG00000007032	A1CF	100	75.407	Chlorocebus_sabaeus
ENSSMAG00000013271	a1cf	95	74.144	ENSCHOG00000009089	A1CF	94	73.801	Choloepus_hoffmanni
ENSSMAG00000013271	a1cf	100	76.710	ENSCPBG00000026464	A1CF	100	76.059	Chrysemys_picta_bellii
ENSSMAG00000013271	a1cf	100	75.570	ENSCANG00000038032	A1CF	100	75.244	Colobus_angolensis_palliatus
ENSSMAG00000013271	a1cf	100	74.919	ENSCGRG00001017413	A1cf	100	74.430	Cricetulus_griseus_chok1gshd
ENSSMAG00000013271	a1cf	100	74.267	ENSCGRG00000017332	A1cf	100	73.941	Cricetulus_griseus_crigri
ENSSMAG00000013271	a1cf	100	89.088	ENSCSEG00000002361	a1cf	100	89.739	Cynoglossus_semilaevis
ENSSMAG00000013271	a1cf	100	87.987	ENSCVAG00000010520	a1cf	100	87.987	Cyprinodon_variegatus
ENSSMAG00000013271	a1cf	100	79.316	ENSDARG00000002968	a1cf	100	78.990	Danio_rerio
ENSSMAG00000013271	a1cf	100	75.081	ENSDNOG00000002829	A1CF	100	74.756	Dasypus_novemcinctus
ENSSMAG00000013271	a1cf	78	86.100	ENSETEG00000012527	A1CF	79	86.100	Echinops_telfairi
ENSSMAG00000013271	a1cf	100	75.447	ENSEASG00005012924	A1CF	100	75.122	Equus_asinus_asinus
ENSSMAG00000013271	a1cf	100	74.959	ENSECAG00000010424	A1CF	100	74.634	Equus_caballus
ENSSMAG00000013271	a1cf	79	65.083	ENSEEUG00000000013	A1CF	97	65.665	Erinaceus_europaeus
ENSSMAG00000013271	a1cf	100	82.085	ENSELUG00000003159	a1cf	100	81.922	Esox_lucius
ENSSMAG00000013271	a1cf	100	72.801	ENSFCAG00000011179	A1CF	100	73.127	Felis_catus
ENSSMAG00000013271	a1cf	100	75.407	ENSFALG00000013183	A1CF	100	74.919	Ficedula_albicollis
ENSSMAG00000013271	a1cf	100	73.779	ENSFDAG00000019371	A1CF	100	73.453	Fukomys_damarensis
ENSSMAG00000013271	a1cf	100	81.981	ENSFHEG00000019652	a1cf	96	89.062	Fundulus_heteroclitus
ENSSMAG00000013271	a1cf	100	78.896	ENSGMOG00000018943	a1cf	100	78.571	Gadus_morhua
ENSSMAG00000013271	a1cf	96	76.061	ENSGALG00000003765	A1CF	96	75.559	Gallus_gallus
ENSSMAG00000013271	a1cf	100	80.032	ENSGAFG00000014868	a1cf	100	79.545	Gambusia_affinis
ENSSMAG00000013271	a1cf	100	87.338	ENSGACG00000010241	a1cf	100	86.526	Gasterosteus_aculeatus
ENSSMAG00000013271	a1cf	96	76.401	ENSGAGG00000016508	A1CF	98	75.722	Gopherus_agassizii
ENSSMAG00000013271	a1cf	100	75.407	ENSGGOG00000009670	A1CF	100	75.081	Gorilla_gorilla
ENSSMAG00000013271	a1cf	100	87.928	ENSHBUG00000021959	a1cf	100	89.723	Haplochromis_burtoni
ENSSMAG00000013271	a1cf	100	75.244	ENSHGLG00000008955	A1CF	100	74.919	Heterocephalus_glaber_female
ENSSMAG00000013271	a1cf	100	74.593	ENSHGLG00100000518	A1CF	100	74.267	Heterocephalus_glaber_male
ENSSMAG00000013271	a1cf	100	75.481	ENSHCOG00000017669	a1cf	100	75.955	Hippocampus_comes
ENSSMAG00000013271	a1cf	89	83.456	ENSIPUG00000010367	a1cf	95	83.272	Ictalurus_punctatus
ENSSMAG00000013271	a1cf	100	87.237	ENSKMAG00000006568	a1cf	100	85.299	Kryptolebias_marmoratus
ENSSMAG00000013271	a1cf	99	89.123	ENSLBEG00000020994	a1cf	99	89.610	Labrus_bergylta
ENSSMAG00000013271	a1cf	100	75.896	ENSLACG00000008061	A1CF	100	75.570	Latimeria_chalumnae
ENSSMAG00000013271	a1cf	100	81.107	ENSLOCG00000006302	a1cf	100	80.945	Lepisosteus_oculatus
ENSSMAG00000013271	a1cf	100	75.244	ENSLAFG00000015462	A1CF	100	75.733	Loxodonta_africana
ENSSMAG00000013271	a1cf	100	74.430	ENSMFAG00000035948	A1CF	100	74.104	Macaca_fascicularis
ENSSMAG00000013271	a1cf	100	74.430	ENSMMUG00000007077	A1CF	100	74.104	Macaca_mulatta
ENSSMAG00000013271	a1cf	100	74.267	ENSMNEG00000031454	A1CF	100	73.941	Macaca_nemestrina
ENSSMAG00000013271	a1cf	100	75.570	ENSMLEG00000037223	A1CF	100	75.244	Mandrillus_leucophaeus
ENSSMAG00000013271	a1cf	100	86.224	ENSMAMG00000010402	a1cf	100	87.279	Mastacembelus_armatus
ENSSMAG00000013271	a1cf	100	86.949	ENSMZEG00005013245	a1cf	100	85.644	Maylandia_zebra
ENSSMAG00000013271	a1cf	100	75.772	ENSMGAG00000001507	A1CF	100	74.797	Meleagris_gallopavo
ENSSMAG00000013271	a1cf	100	74.756	ENSMAUG00000007422	A1cf	100	74.430	Mesocricetus_auratus
ENSSMAG00000013271	a1cf	100	73.864	ENSMICG00000003377	A1CF	100	74.513	Microcebus_murinus
ENSSMAG00000013271	a1cf	100	75.244	ENSMOCG00000021536	A1cf	100	74.919	Microtus_ochrogaster
ENSSMAG00000013271	a1cf	100	76.299	ENSMMOG00000009422	a1cf	100	76.461	Mola_mola
ENSSMAG00000013271	a1cf	89	75.596	ENSMODG00000016478	A1CF	97	75.963	Monodelphis_domestica
ENSSMAG00000013271	a1cf	100	80.524	ENSMALG00000012992	a1cf	100	79.869	Monopterus_albus
ENSSMAG00000013271	a1cf	100	74.756	MGP_CAROLIEiJ_G0022873	A1cf	100	74.430	Mus_caroli
ENSSMAG00000013271	a1cf	100	74.756	ENSMUSG00000052595	A1cf	99	81.605	Mus_musculus
ENSSMAG00000013271	a1cf	100	74.104	MGP_PahariEiJ_G0014366	A1cf	100	73.779	Mus_pahari
ENSSMAG00000013271	a1cf	100	74.919	MGP_SPRETEiJ_G0023792	A1cf	100	74.593	Mus_spretus
ENSSMAG00000013271	a1cf	100	70.033	ENSMPUG00000016971	A1CF	100	69.870	Mustela_putorius_furo
ENSSMAG00000013271	a1cf	100	75.081	ENSMLUG00000016071	A1CF	100	75.244	Myotis_lucifugus
ENSSMAG00000013271	a1cf	100	75.244	ENSNGAG00000015136	A1cf	100	74.756	Nannospalax_galili
ENSSMAG00000013271	a1cf	100	87.765	ENSNBRG00000001712	a1cf	100	89.560	Neolamprologus_brichardi
ENSSMAG00000013271	a1cf	100	76.059	ENSNLEG00000012028	A1CF	100	75.733	Nomascus_leucogenys
ENSSMAG00000013271	a1cf	94	74.483	ENSMEUG00000015909	A1CF	100	74.138	Notamacropus_eugenii
ENSSMAG00000013271	a1cf	88	68.577	ENSOPRG00000010667	A1CF	100	66.607	Ochotona_princeps
ENSSMAG00000013271	a1cf	100	88.744	ENSONIG00000019105	a1cf	100	89.233	Oreochromis_niloticus
ENSSMAG00000013271	a1cf	78	74.948	ENSOANG00000007360	A1CF	99	74.534	Ornithorhynchus_anatinus
ENSSMAG00000013271	a1cf	100	74.104	ENSOCUG00000011587	A1CF	100	73.779	Oryctolagus_cuniculus
ENSSMAG00000013271	a1cf	100	83.117	ENSORLG00000013342	a1cf	100	82.982	Oryzias_latipes
ENSSMAG00000013271	a1cf	100	85.251	ENSORLG00020000586	a1cf	100	85.737	Oryzias_latipes_hni
ENSSMAG00000013271	a1cf	100	85.251	ENSORLG00015018569	a1cf	100	85.737	Oryzias_latipes_hsok
ENSSMAG00000013271	a1cf	100	85.227	ENSOMEG00000013531	a1cf	100	84.740	Oryzias_melastigma
ENSSMAG00000013271	a1cf	100	74.593	ENSOGAG00000012884	A1CF	100	75.244	Otolemur_garnettii
ENSSMAG00000013271	a1cf	100	76.059	ENSOARG00000013695	A1CF	100	75.896	Ovis_aries
ENSSMAG00000013271	a1cf	97	75.294	ENSPPAG00000028115	A1CF	99	78.627	Pan_paniscus
ENSSMAG00000013271	a1cf	100	74.267	ENSPPRG00000012180	A1CF	100	74.593	Panthera_pardus
ENSSMAG00000013271	a1cf	100	74.267	ENSPTIG00000021223	A1CF	100	74.593	Panthera_tigris_altaica
ENSSMAG00000013271	a1cf	100	75.407	ENSPTRG00000002508	A1CF	100	75.081	Pan_troglodytes
ENSSMAG00000013271	a1cf	100	74.430	ENSPANG00000021988	A1CF	100	74.104	Papio_anubis
ENSSMAG00000013271	a1cf	100	80.293	ENSPKIG00000025176	a1cf	100	80.130	Paramormyrops_kingsleyae
ENSSMAG00000013271	a1cf	100	75.244	ENSPSIG00000010318	A1CF	100	74.756	Pelodiscus_sinensis
ENSSMAG00000013271	a1cf	98	70.432	ENSPMGG00000013359	a1cf	99	70.511	Periophthalmus_magnuspinnatus
ENSSMAG00000013271	a1cf	100	75.407	ENSPEMG00000015021	A1cf	100	74.756	Peromyscus_maniculatus_bairdii
ENSSMAG00000013271	a1cf	100	73.290	ENSPCIG00000002175	A1CF	100	73.779	Phascolarctos_cinereus
ENSSMAG00000013271	a1cf	100	89.448	ENSPFOG00000007437	-	100	89.448	Poecilia_formosa
ENSSMAG00000013271	a1cf	100	89.448	ENSPFOG00000006683	a1cf	100	89.448	Poecilia_formosa
ENSSMAG00000013271	a1cf	100	87.987	ENSPLAG00000000026	a1cf	100	87.987	Poecilia_latipinna
ENSSMAG00000013271	a1cf	100	87.987	ENSPLAG00000001210	-	100	87.987	Poecilia_latipinna
ENSSMAG00000013271	a1cf	100	81.997	ENSPMEG00000015529	-	100	81.997	Poecilia_mexicana
ENSSMAG00000013271	a1cf	100	80.687	ENSPMEG00000000921	a1cf	100	80.687	Poecilia_mexicana
ENSSMAG00000013271	a1cf	100	88.799	ENSPREG00000016298	a1cf	100	88.799	Poecilia_reticulata
ENSSMAG00000013271	a1cf	100	74.919	ENSPPYG00000002819	A1CF	100	74.593	Pongo_abelii
ENSSMAG00000013271	a1cf	80	58.656	ENSPCAG00000006463	A1CF	79	58.045	Procavia_capensis
ENSSMAG00000013271	a1cf	100	75.081	ENSPCOG00000024172	A1CF	100	75.570	Propithecus_coquereli
ENSSMAG00000013271	a1cf	100	89.560	ENSPNYG00000017944	a1cf	100	91.354	Pundamilia_nyererei
ENSSMAG00000013271	a1cf	100	81.494	ENSPNAG00000007704	a1cf	100	81.494	Pygocentrus_nattereri
ENSSMAG00000013271	a1cf	100	73.616	ENSRNOG00000033195	A1cf	100	73.290	Rattus_norvegicus
ENSSMAG00000013271	a1cf	100	70.617	ENSRBIG00000042892	A1CF	100	72.401	Rhinopithecus_bieti
ENSSMAG00000013271	a1cf	100	75.570	ENSRROG00000041398	A1CF	100	75.244	Rhinopithecus_roxellana
ENSSMAG00000013271	a1cf	100	76.384	ENSSBOG00000021930	A1CF	100	76.059	Saimiri_boliviensis_boliviensis
ENSSMAG00000013271	a1cf	100	75.570	ENSSHAG00000005096	A1CF	100	75.244	Sarcophilus_harrisii
ENSSMAG00000013271	a1cf	100	81.331	ENSSFOG00015011774	a1cf	100	80.389	Scleropages_formosus
ENSSMAG00000013271	a1cf	100	90.260	ENSSDUG00000013930	a1cf	100	89.935	Seriola_dumerili
ENSSMAG00000013271	a1cf	100	82.815	ENSSLDG00000004290	a1cf	100	82.815	Seriola_lalandi_dorsalis
ENSSMAG00000013271	a1cf	95	67.238	ENSSARG00000005940	A1CF	95	66.895	Sorex_araneus
ENSSMAG00000013271	a1cf	95	75.726	ENSSPUG00000006797	A1CF	95	74.830	Sphenodon_punctatus
ENSSMAG00000013271	a1cf	100	76.710	ENSSSCG00000010431	A1CF	100	76.547	Sus_scrofa
ENSSMAG00000013271	a1cf	100	76.585	ENSTGUG00000005090	A1CF	100	76.260	Taeniopygia_guttata
ENSSMAG00000013271	a1cf	100	85.900	ENSTRUG00000001982	a1cf	100	86.224	Takifugu_rubripes
ENSSMAG00000013271	a1cf	100	86.084	ENSTNIG00000003580	a1cf	100	85.922	Tetraodon_nigroviridis
ENSSMAG00000013271	a1cf	97	70.420	ENSTTRG00000013190	A1CF	95	70.420	Tursiops_truncatus
ENSSMAG00000013271	a1cf	100	73.453	ENSUAMG00000020065	A1CF	100	72.964	Ursus_americanus
ENSSMAG00000013271	a1cf	100	74.267	ENSUMAG00000011162	A1CF	100	73.941	Ursus_maritimus
ENSSMAG00000013271	a1cf	87	71.933	ENSVPAG00000006130	A1CF	86	71.561	Vicugna_pacos
ENSSMAG00000013271	a1cf	100	74.104	ENSVVUG00000002504	A1CF	100	73.616	Vulpes_vulpes
ENSSMAG00000013271	a1cf	100	70.033	ENSXETG00000006611	a1cf	100	69.707	Xenopus_tropicalis
ENSSMAG00000013271	a1cf	100	87.825	ENSXCOG00000003302	a1cf	100	87.338	Xiphophorus_couchianus
ENSSMAG00000013271	a1cf	100	89.123	ENSXMAG00000016703	a1cf	100	88.636	Xiphophorus_maculatus