EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSMAG00000013640 (Gene tree)
Gene ID: -
Gene Symbol: sbno1
Alias: -
Full Name: strawberry notch homolog 1 (Drosophila)
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Minus strand
Length: 18896 bases
Position: chr1:9981237-10000132
Accession: ZDB-GENE-080522-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000022402	ResIII	PF04851.15	2.1e-07	1	1
ENSSMAP00000022372	ResIII	PF04851.15	2.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000022663	-	4077	-	ENSSMAP00000022402	1358 (aa)	-	-
ENSSMAT00000022631	-	8136	-	ENSSMAP00000022372	1402 (aa)	-	A0A2U9AWN2

Gene Model

Click here to download ENSSMAG00000013640's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000013640's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSMAG00000013640	sbno1	77	62.812	ENSSMAG00000012489	si:ch73-63e15.2	64	62.812

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000013640	sbno1	99	76.110	ENSG00000139697	SBNO1	99	75.899	Homo_sapiens
ENSSMAG00000013640	sbno1	84	95.292	ENSAPOG00000003196	sbno1	98	95.292	Acanthochromis_polyacanthus
ENSSMAG00000013640	sbno1	99	76.231	ENSAMEG00000015151	SBNO1	99	76.020	Ailuropoda_melanoleuca
ENSSMAG00000013640	sbno1	100	87.350	ENSACIG00000008088	sbno1	99	87.562	Amphilophus_citrinellus
ENSSMAG00000013640	sbno1	100	92.242	ENSAOCG00000014859	sbno1	99	92.669	Amphiprion_ocellaris
ENSSMAG00000013640	sbno1	100	92.171	ENSAPEG00000006069	sbno1	99	92.598	Amphiprion_percula
ENSSMAG00000013640	sbno1	100	93.310	ENSATEG00000006667	sbno1	100	93.310	Anabas_testudineus
ENSSMAG00000013640	sbno1	98	76.475	ENSAPLG00000015674	SBNO1	99	76.342	Anas_platyrhynchos
ENSSMAG00000013640	sbno1	98	75.215	ENSACAG00000015441	SBNO1	88	74.754	Anolis_carolinensis
ENSSMAG00000013640	sbno1	95	83.485	ENSANAG00000029958	-	99	82.914	Aotus_nancymaae
ENSSMAG00000013640	sbno1	100	88.840	ENSACLG00000024913	sbno1	100	88.987	Astatotilapia_calliptera
ENSSMAG00000013640	sbno1	100	81.902	ENSAMXG00000019473	sbno1	100	82.612	Astyanax_mexicanus
ENSSMAG00000013640	sbno1	100	76.425	ENSBTAG00000020505	SBNO1	99	76.214	Bos_taurus
ENSSMAG00000013640	sbno1	99	76.039	ENSCJAG00000016599	SBNO1	99	75.828	Callithrix_jacchus
ENSSMAG00000013640	sbno1	99	76.355	ENSCAFG00000007503	SBNO1	99	78.005	Canis_familiaris
ENSSMAG00000013640	sbno1	95	80.969	ENSCAFG00020015363	SBNO1	99	80.969	Canis_lupus_dingo
ENSSMAG00000013640	sbno1	95	83.574	ENSCHIG00000008382	SBNO1	99	83.574	Capra_hircus
ENSSMAG00000013640	sbno1	99	76.251	ENSTSYG00000012749	SBNO1	99	76.396	Carlito_syrichta
ENSSMAG00000013640	sbno1	90	83.725	ENSCAPG00000000384	SBNO1	99	83.725	Cavia_aperea
ENSSMAG00000013640	sbno1	95	83.725	ENSCPOG00000008109	SBNO1	99	83.725	Cavia_porcellus
ENSSMAG00000013640	sbno1	99	71.811	ENSCCAG00000035316	SBNO1	99	72.202	Cebus_capucinus
ENSSMAG00000013640	sbno1	99	75.337	ENSCATG00000008239	SBNO1	99	83.124	Cercocebus_atys
ENSSMAG00000013640	sbno1	95	83.725	ENSCLAG00000008995	SBNO1	99	83.725	Chinchilla_lanigera
ENSSMAG00000013640	sbno1	85	82.014	ENSCSAG00000002064	SBNO1	99	82.014	Chlorocebus_sabaeus
ENSSMAG00000013640	sbno1	96	74.881	ENSCHOG00000008814	SBNO1	96	74.594	Choloepus_hoffmanni
ENSSMAG00000013640	sbno1	98	76.225	ENSCPBG00000025968	SBNO1	99	75.743	Chrysemys_picta_bellii
ENSSMAG00000013640	sbno1	99	72.355	ENSCANG00000042688	-	99	71.932	Colobus_angolensis_palliatus
ENSSMAG00000013640	sbno1	96	81.462	ENSCGRG00001017470	Sbno1	99	81.720	Cricetulus_griseus_chok1gshd
ENSSMAG00000013640	sbno1	96	81.462	ENSCGRG00000004756	Sbno1	99	81.720	Cricetulus_griseus_crigri
ENSSMAG00000013640	sbno1	100	91.453	ENSCSEG00000011919	sbno1	100	91.453	Cynoglossus_semilaevis
ENSSMAG00000013640	sbno1	100	90.249	ENSCVAG00000007038	sbno1	100	90.107	Cyprinodon_variegatus
ENSSMAG00000013640	sbno1	100	81.960	ENSDARG00000099080	sbno1	100	82.173	Danio_rerio
ENSSMAG00000013640	sbno1	99	77.905	ENSDNOG00000017147	SBNO1	96	77.905	Dasypus_novemcinctus
ENSSMAG00000013640	sbno1	99	72.635	ENSDORG00000015261	Sbno1	99	72.274	Dipodomys_ordii
ENSSMAG00000013640	sbno1	93	71.698	ENSETEG00000005620	SBNO1	93	71.698	Echinops_telfairi
ENSSMAG00000013640	sbno1	75	61.673	ENSEBUG00000013823	sbno1	93	61.734	Eptatretus_burgeri
ENSSMAG00000013640	sbno1	51	73.029	ENSEASG00005012595	-	92	73.859	Equus_asinus_asinus
ENSSMAG00000013640	sbno1	99	76.392	ENSECAG00000006127	SBNO1	99	76.655	Equus_caballus
ENSSMAG00000013640	sbno1	83	78.571	ENSEEUG00000003793	SBNO1	82	78.571	Erinaceus_europaeus
ENSSMAG00000013640	sbno1	100	83.770	ENSELUG00000002886	sbno1	99	83.593	Esox_lucius
ENSSMAG00000013640	sbno1	99	76.392	ENSFCAG00000015331	SBNO1	99	76.180	Felis_catus
ENSSMAG00000013640	sbno1	98	76.547	ENSFALG00000009273	SBNO1	99	76.412	Ficedula_albicollis
ENSSMAG00000013640	sbno1	95	81.159	ENSFDAG00000014232	SBNO1	99	74.406	Fukomys_damarensis
ENSSMAG00000013640	sbno1	100	90.320	ENSFHEG00000007360	sbno1	100	90.107	Fundulus_heteroclitus
ENSSMAG00000013640	sbno1	95	85.919	ENSGMOG00000018229	sbno1	99	85.994	Gadus_morhua
ENSSMAG00000013640	sbno1	88	76.297	ENSGALG00000003392	SBNO1	99	76.297	Gallus_gallus
ENSSMAG00000013640	sbno1	100	90.107	ENSGAFG00000003960	sbno1	100	89.893	Gambusia_affinis
ENSSMAG00000013640	sbno1	95	90.602	ENSGACG00000015633	sbno1	99	90.602	Gasterosteus_aculeatus
ENSSMAG00000013640	sbno1	96	83.148	ENSGAGG00000001065	SBNO1	99	83.154	Gopherus_agassizii
ENSSMAG00000013640	sbno1	95	83.544	ENSGGOG00000015000	SBNO1	99	83.544	Gorilla_gorilla
ENSSMAG00000013640	sbno1	100	82.443	ENSHBUG00000011910	sbno1	100	82.516	Haplochromis_burtoni
ENSSMAG00000013640	sbno1	95	84.029	ENSHGLG00000014165	-	99	83.453	Heterocephalus_glaber_female
ENSSMAG00000013640	sbno1	91	92.673	ENSHCOG00000003246	sbno1	95	92.673	Hippocampus_comes
ENSSMAG00000013640	sbno1	100	82.553	ENSIPUG00000015830	Sbno1	98	83.347	Ictalurus_punctatus
ENSSMAG00000013640	sbno1	95	83.124	ENSSTOG00000023221	SBNO1	99	83.124	Ictidomys_tridecemlineatus
ENSSMAG00000013640	sbno1	99	76.462	ENSJJAG00000001741	Sbno1	99	79.174	Jaculus_jaculus
ENSSMAG00000013640	sbno1	100	92.242	ENSKMAG00000009696	sbno1	100	92.242	Kryptolebias_marmoratus
ENSSMAG00000013640	sbno1	100	90.980	ENSLBEG00000007623	sbno1	100	91.051	Labrus_bergylta
ENSSMAG00000013640	sbno1	100	72.265	ENSLACG00000017227	SBNO1	99	74.801	Latimeria_chalumnae
ENSSMAG00000013640	sbno1	100	81.818	ENSLOCG00000005725	sbno1	97	81.748	Lepisosteus_oculatus
ENSSMAG00000013640	sbno1	99	75.526	ENSLAFG00000002135	SBNO1	99	75.687	Loxodonta_africana
ENSSMAG00000013640	sbno1	99	76.110	ENSMFAG00000031429	SBNO1	99	79.751	Macaca_fascicularis
ENSSMAG00000013640	sbno1	99	76.110	ENSMMUG00000011496	SBNO1	99	79.751	Macaca_mulatta
ENSSMAG00000013640	sbno1	95	82.944	ENSMLEG00000033260	SBNO1	99	82.944	Mandrillus_leucophaeus
ENSSMAG00000013640	sbno1	100	92.456	ENSMAMG00000005473	sbno1	100	92.242	Mastacembelus_armatus
ENSSMAG00000013640	sbno1	98	76.585	ENSMGAG00000003274	SBNO1	99	76.379	Meleagris_gallopavo
ENSSMAG00000013640	sbno1	50	73.521	ENSMAUG00000004834	-	99	73.803	Mesocricetus_auratus
ENSSMAG00000013640	sbno1	95	80.762	ENSMICG00000006573	-	99	80.216	Microcebus_murinus
ENSSMAG00000013640	sbno1	95	83.032	ENSMOCG00000009390	Sbno1	99	83.032	Microtus_ochrogaster
ENSSMAG00000013640	sbno1	100	83.986	ENSMMOG00000008691	sbno1	99	84.555	Mola_mola
ENSSMAG00000013640	sbno1	99	75.901	ENSMODG00000012470	SBNO1	98	75.636	Monodelphis_domestica
ENSSMAG00000013640	sbno1	100	91.969	ENSMALG00000001056	sbno1	100	92.040	Monopterus_albus
ENSSMAG00000013640	sbno1	99	75.794	MGP_CAROLIEiJ_G0027749	Sbno1	95	91.228	Mus_caroli
ENSSMAG00000013640	sbno1	99	76.147	ENSMUSG00000038095	Sbno1	94	91.228	Mus_musculus
ENSSMAG00000013640	sbno1	99	76.076	MGP_PahariEiJ_G0024329	Sbno1	95	91.228	Mus_pahari
ENSSMAG00000013640	sbno1	99	76.147	MGP_SPRETEiJ_G0028747	Sbno1	95	91.228	Mus_spretus
ENSSMAG00000013640	sbno1	99	76.462	ENSMPUG00000001658	SBNO1	99	76.251	Mustela_putorius_furo
ENSSMAG00000013640	sbno1	99	76.110	ENSMLUG00000017159	SBNO1	99	75.899	Myotis_lucifugus
ENSSMAG00000013640	sbno1	92	83.984	ENSNGAG00000012620	Sbno1	98	83.984	Nannospalax_galili
ENSSMAG00000013640	sbno1	100	87.491	ENSNBRG00000019189	sbno1	100	87.564	Neolamprologus_brichardi
ENSSMAG00000013640	sbno1	99	73.061	ENSNLEG00000001502	SBNO1	99	74.865	Nomascus_leucogenys
ENSSMAG00000013640	sbno1	62	73.585	ENSMEUG00000008768	-	93	76.101	Notamacropus_eugenii
ENSSMAG00000013640	sbno1	99	75.000	ENSOPRG00000011054	SBNO1	99	74.930	Ochotona_princeps
ENSSMAG00000013640	sbno1	95	83.906	ENSODEG00000009997	SBNO1	99	83.906	Octodon_degus
ENSSMAG00000013640	sbno1	100	91.400	ENSONIG00000015348	sbno1	100	91.471	Oreochromis_niloticus
ENSSMAG00000013640	sbno1	98	75.215	ENSOCUG00000002441	SBNO1	95	75.000	Oryctolagus_cuniculus
ENSSMAG00000013640	sbno1	100	89.631	ENSORLG00000001593	sbno1	100	89.489	Oryzias_latipes
ENSSMAG00000013640	sbno1	100	89.694	ENSORLG00020015216	sbno1	100	89.623	Oryzias_latipes_hni
ENSSMAG00000013640	sbno1	100	89.837	ENSORLG00015002726	sbno1	100	89.765	Oryzias_latipes_hsok
ENSSMAG00000013640	sbno1	99	89.579	ENSOMEG00000019313	sbno1	99	89.650	Oryzias_melastigma
ENSSMAG00000013640	sbno1	50	72.113	ENSOGAG00000010781	-	99	73.951	Otolemur_garnettii
ENSSMAG00000013640	sbno1	100	76.020	ENSOARG00000004404	SBNO1	99	76.003	Ovis_aries
ENSSMAG00000013640	sbno1	95	83.544	ENSPPAG00000024635	SBNO1	99	83.544	Pan_paniscus
ENSSMAG00000013640	sbno1	99	76.392	ENSPPRG00000022092	SBNO1	99	76.180	Panthera_pardus
ENSSMAG00000013640	sbno1	99	76.342	ENSPTIG00000017803	SBNO1	99	76.130	Panthera_tigris_altaica
ENSSMAG00000013640	sbno1	95	83.544	ENSPTRG00000005597	SBNO1	99	83.544	Pan_troglodytes
ENSSMAG00000013640	sbno1	95	82.944	ENSPANG00000011640	SBNO1	99	82.944	Papio_anubis
ENSSMAG00000013640	sbno1	100	81.272	ENSPKIG00000001441	sbno1	100	81.413	Paramormyrops_kingsleyae
ENSSMAG00000013640	sbno1	92	72.579	ENSPSIG00000009256	-	99	72.579	Pelodiscus_sinensis
ENSSMAG00000013640	sbno1	98	75.596	ENSPSIG00000009572	-	99	75.266	Pelodiscus_sinensis
ENSSMAG00000013640	sbno1	95	82.258	ENSPEMG00000016087	Sbno1	99	82.852	Peromyscus_maniculatus_bairdii
ENSSMAG00000013640	sbno1	99	75.636	ENSPCIG00000010985	SBNO1	99	75.582	Phascolarctos_cinereus
ENSSMAG00000013640	sbno1	100	90.605	ENSPFOG00000005069	sbno1	100	90.605	Poecilia_formosa
ENSSMAG00000013640	sbno1	100	90.676	ENSPLAG00000015015	sbno1	100	90.676	Poecilia_latipinna
ENSSMAG00000013640	sbno1	100	90.612	ENSPMEG00000021212	sbno1	100	90.612	Poecilia_mexicana
ENSSMAG00000013640	sbno1	100	89.900	ENSPREG00000017746	sbno1	100	89.900	Poecilia_reticulata
ENSSMAG00000013640	sbno1	99	75.719	ENSPPYG00000005084	SBNO1	99	76.023	Pongo_abelii
ENSSMAG00000013640	sbno1	89	69.588	ENSPCAG00000008634	SBNO1	88	69.241	Procavia_capensis
ENSSMAG00000013640	sbno1	96	82.734	ENSPCOG00000024277	SBNO1	99	82.734	Propithecus_coquereli
ENSSMAG00000013640	sbno1	87	83.698	ENSPVAG00000015304	SBNO1	87	83.698	Pteropus_vampyrus
ENSSMAG00000013640	sbno1	100	91.246	ENSPNYG00000004291	sbno1	100	91.246	Pundamilia_nyererei
ENSSMAG00000013640	sbno1	100	82.282	ENSPNAG00000015622	sbno1	100	82.140	Pygocentrus_nattereri
ENSSMAG00000013640	sbno1	95	82.437	ENSRNOG00000001064	Sbno1	99	83.183	Rattus_norvegicus
ENSSMAG00000013640	sbno1	95	82.944	ENSRROG00000034230	SBNO1	99	82.944	Rhinopithecus_roxellana
ENSSMAG00000013640	sbno1	97	74.738	ENSSBOG00000015422	SBNO1	99	74.813	Saimiri_boliviensis_boliviensis
ENSSMAG00000013640	sbno1	100	81.901	ENSSFOG00015019025	sbno1	100	81.972	Scleropages_formosus
ENSSMAG00000013640	sbno1	100	95.302	ENSSDUG00000023480	sbno1	100	95.302	Seriola_dumerili
ENSSMAG00000013640	sbno1	100	95.018	ENSSLDG00000007928	sbno1	100	95.018	Seriola_lalandi_dorsalis
ENSSMAG00000013640	sbno1	89	81.129	ENSSARG00000002594	SBNO1	89	81.613	Sorex_araneus
ENSSMAG00000013640	sbno1	98	75.904	ENSSPUG00000012640	SBNO1	99	75.284	Sphenodon_punctatus
ENSSMAG00000013640	sbno1	100	93.461	ENSSPAG00000016244	sbno1	100	93.461	Stegastes_partitus
ENSSMAG00000013640	sbno1	99	75.969	ENSSSCG00000009776	SBNO1	99	75.758	Sus_scrofa
ENSSMAG00000013640	sbno1	98	76.403	ENSTGUG00000005380	SBNO1	99	76.271	Taeniopygia_guttata
ENSSMAG00000013640	sbno1	99	87.482	ENSTRUG00000018490	sbno1	99	87.482	Takifugu_rubripes
ENSSMAG00000013640	sbno1	57	86.500	ENSTNIG00000013506	sbno1	99	86.541	Tetraodon_nigroviridis
ENSSMAG00000013640	sbno1	99	76.392	ENSUAMG00000019671	SBNO1	99	76.180	Ursus_americanus
ENSSMAG00000013640	sbno1	99	76.392	ENSUMAG00000004002	SBNO1	99	76.180	Ursus_maritimus
ENSSMAG00000013640	sbno1	91	79.612	ENSVPAG00000007024	SBNO1	90	79.320	Vicugna_pacos
ENSSMAG00000013640	sbno1	99	76.462	ENSVVUG00000027807	SBNO1	99	76.180	Vulpes_vulpes
ENSSMAG00000013640	sbno1	99	72.530	ENSXETG00000031930	SBNO1	90	81.990	Xenopus_tropicalis
ENSSMAG00000013640	sbno1	88	88.627	ENSXCOG00000011607	sbno1	99	87.219	Xiphophorus_couchianus
ENSSMAG00000013640	sbno1	100	90.541	ENSXMAG00000002140	sbno1	100	90.612	Xiphophorus_maculatus