EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSMAG00000013978 (Gene tree)
Gene ID: -
Gene Symbol: snrnp70
Alias: U1 small ribonucleoprotein 70kd|snrp70|wu:fc20b04|zgc:136450
Full Name: small nuclear ribonucleoprotein 70 (U1)
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Plus strand
Length: 12614 bases
Position: chr19:71846-84459
Accession: ZDB-GENE-040825-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000022950	RRM_1	PF00076.22	1.4e-19	1	1
ENSSMAP00000022904	RRM_1	PF00076.22	1.7e-19	1	1
ENSSMAP00000022950	U1snRNP70_N	PF12220.8	9.5e-25	1	1
ENSSMAP00000022904	U1snRNP70_N	PF12220.8	1.2e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000023166	-	2606	-	ENSSMAP00000022904	490 (aa)	-	-
ENSSMAT00000023213	-	1311	-	ENSSMAP00000022950	436 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000013978's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000013978's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000013978	snrnp70	100	71.167	ENSAPEG00000006219	snrnp70	100	73.517	Amphiprion_percula
ENSSMAG00000013978	snrnp70	100	77.033	ENSACLG00000011144	snrnp70	100	73.849	Astatotilapia_calliptera
ENSSMAG00000013978	snrnp70	71	94.472	ENSGAFG00000003395	snrnp70	100	72.234	Gambusia_affinis
ENSSMAG00000013978	snrnp70	58	75.197	ENSGACG00000000448	snrnp70	71	97.345	Gasterosteus_aculeatus
ENSSMAG00000013978	snrnp70	100	77.642	ENSHBUG00000018856	snrnp70	79	97.409	Haplochromis_burtoni
ENSSMAG00000013978	snrnp70	100	77.236	ENSMZEG00005022849	snrnp70	100	74.947	Maylandia_zebra
ENSSMAG00000013978	snrnp70	100	68.400	ENSMMOG00000005467	snrnp70	78	97.321	Mola_mola
ENSSMAG00000013978	snrnp70	98	81.705	ENSMALG00000002275	snrnp70	90	77.681	Monopterus_albus
ENSSMAG00000013978	snrnp70	100	75.813	ENSORLG00000017158	snrnp70	78	97.409	Oryzias_latipes
ENSSMAG00000013978	snrnp70	100	75.610	ENSORLG00015010817	snrnp70	78	97.409	Oryzias_latipes_hsok
ENSSMAG00000013978	snrnp70	54	70.566	ENSPSIG00000015251	SNRNP70	88	80.444	Pelodiscus_sinensis
ENSSMAG00000013978	snrnp70	71	95.000	ENSPMEG00000008496	snrnp70	100	71.949	Poecilia_mexicana
ENSSMAG00000013978	snrnp70	73	91.827	ENSPREG00000005486	snrnp70	100	69.546	Poecilia_reticulata
ENSSMAG00000013978	snrnp70	100	77.846	ENSPNYG00000003258	snrnp70	100	75.159	Pundamilia_nyererei
ENSSMAG00000013978	snrnp70	72	84.615	ENSXCOG00000008991	snrnp70	100	67.241	Xiphophorus_couchianus
ENSSMAG00000013978	snrnp70	72	84.615	ENSXMAG00000012789	snrnp70	100	67.026	Xiphophorus_maculatus