EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSMAG00000014342 (Gene tree)
Gene ID: -
Gene Symbol: polr1a
Alias: fa26a03|sb:cb935|wu:fa26a03
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Plus strand
Length: 22613 bases
Position: chr13:19995892-20018504
Accession: ZDB-GENE-030131-5286
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000023517	RNA_pol_Rpb1_5	PF04998.17	2.5e-100	1	1
ENSSMAP00000023570	RNA_pol_Rpb1_5	PF04998.17	2.6e-100	1	1
ENSSMAP00000023662	RNA_pol_Rpb1_5	PF04998.17	2.7e-100	1	1
ENSSMAP00000023517	RNA_pol_Rpb1_4	PF05000.17	1.8e-20	1	1
ENSSMAP00000023570	RNA_pol_Rpb1_4	PF05000.17	1.8e-20	1	1
ENSSMAP00000023662	RNA_pol_Rpb1_4	PF05000.17	2.3e-20	1	1
ENSSMAP00000023662	RNA_pol_Rpb1_2	PF00623.20	8.4e-69	1	1
ENSSMAP00000023517	RNA_pol_Rpb1_2	PF00623.20	9.1e-69	1	1
ENSSMAP00000023570	RNA_pol_Rpb1_2	PF00623.20	9.2e-69	1	1
ENSSMAP00000023662	RNA_pol_Rpb1_3	PF04983.18	6.9e-37	1	1
ENSSMAP00000023517	RNA_pol_Rpb1_3	PF04983.18	7.7e-37	1	1
ENSSMAP00000023570	RNA_pol_Rpb1_3	PF04983.18	7.8e-37	1	1
ENSSMAP00000023517	RNA_pol_Rpb1_1	PF04997.12	1.5e-23	1	1
ENSSMAP00000023570	RNA_pol_Rpb1_1	PF04997.12	1.5e-23	1	1
ENSSMAP00000023662	RNA_pol_Rpb1_1	PF04997.12	3e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000023838	-	5210	-	ENSSMAP00000023570	1698 (aa)	-	-
ENSSMAT00000023933	-	4824	-	ENSSMAP00000023662	1607 (aa)	-	-
ENSSMAT00000023784	-	5141	-	ENSSMAP00000023517	1675 (aa)	-	A0A2U9C7H1

Gene Model

Click here to download ENSSMAG00000014342's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000014342's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSMAG00000014342	polr1a	60	33.564	ENSSMAG00000001780	polr3a	69	32.816
ENSSMAG00000014342	polr1a	66	44.262	ENSSMAG00000009137	polr2a	50	44.262

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000014342	polr1a	100	66.165	ENSG00000068654	POLR1A	100	66.358	Homo_sapiens
ENSSMAG00000014342	polr1a	69	86.786	ENSAPOG00000017945	polr1a	99	86.786	Acanthochromis_polyacanthus
ENSSMAG00000014342	polr1a	100	66.261	ENSAMEG00000005807	POLR1A	100	69.867	Ailuropoda_melanoleuca
ENSSMAG00000014342	polr1a	100	82.736	ENSACIG00000022147	polr1a	100	82.574	Amphilophus_citrinellus
ENSSMAG00000014342	polr1a	100	85.664	ENSAOCG00000017336	polr1a	100	85.949	Amphiprion_ocellaris
ENSSMAG00000014342	polr1a	100	85.664	ENSAPEG00000016105	polr1a	100	85.647	Amphiprion_percula
ENSSMAG00000014342	polr1a	100	87.507	ENSATEG00000016773	polr1a	100	87.271	Anabas_testudineus
ENSSMAG00000014342	polr1a	88	68.094	ENSAPLG00000013871	POLR1A	99	67.547	Anas_platyrhynchos
ENSSMAG00000014342	polr1a	99	64.689	ENSACAG00000012141	POLR1A	99	64.514	Anolis_carolinensis
ENSSMAG00000014342	polr1a	100	65.489	ENSANAG00000033927	POLR1A	100	65.951	Aotus_nancymaae
ENSSMAG00000014342	polr1a	100	81.481	ENSACLG00000020541	polr1a	100	80.630	Astatotilapia_calliptera
ENSSMAG00000014342	polr1a	100	66.357	ENSBTAG00000006481	POLR1A	100	66.244	Bos_taurus
ENSSMAG00000014342	polr1a	99	40.336	WBGene00012999	rpoa-1	98	38.752	Caenorhabditis_elegans
ENSSMAG00000014342	polr1a	100	65.509	ENSCJAG00000019547	POLR1A	100	65.799	Callithrix_jacchus
ENSSMAG00000014342	polr1a	100	66.241	ENSCAFG00000007613	POLR1A	100	66.241	Canis_familiaris
ENSSMAG00000014342	polr1a	97	71.034	ENSCAFG00020014752	POLR1A	100	66.529	Canis_lupus_dingo
ENSSMAG00000014342	polr1a	100	66.066	ENSCHIG00000018204	POLR1A	100	65.950	Capra_hircus
ENSSMAG00000014342	polr1a	100	65.549	ENSTSYG00000002761	POLR1A	100	65.759	Carlito_syrichta
ENSSMAG00000014342	polr1a	97	62.081	ENSCAPG00000010132	POLR1A	99	62.574	Cavia_aperea
ENSSMAG00000014342	polr1a	100	64.931	ENSCPOG00000012350	POLR1A	100	65.476	Cavia_porcellus
ENSSMAG00000014342	polr1a	100	65.373	ENSCCAG00000019839	POLR1A	100	66.030	Cebus_capucinus
ENSSMAG00000014342	polr1a	100	66.300	ENSCATG00000029786	POLR1A	100	66.609	Cercocebus_atys
ENSSMAG00000014342	polr1a	100	64.781	ENSCLAG00000005187	POLR1A	100	65.172	Chinchilla_lanigera
ENSSMAG00000014342	polr1a	100	65.837	ENSCSAG00000016251	POLR1A	100	66.435	Chlorocebus_sabaeus
ENSSMAG00000014342	polr1a	99	66.628	ENSCPBG00000001115	POLR1A	99	66.997	Chrysemys_picta_bellii
ENSSMAG00000014342	polr1a	93	57.662	ENSCSAVG00000007184	-	99	48.252	Ciona_savignyi
ENSSMAG00000014342	polr1a	100	63.631	ENSCANG00000031785	POLR1A	100	63.768	Colobus_angolensis_palliatus
ENSSMAG00000014342	polr1a	96	66.139	ENSCGRG00001006651	Polr1a	100	66.139	Cricetulus_griseus_chok1gshd
ENSSMAG00000014342	polr1a	62	62.645	ENSCGRG00000010834	Polr1a	100	63.934	Cricetulus_griseus_crigri
ENSSMAG00000014342	polr1a	100	79.118	ENSCSEG00000020190	polr1a	100	79.235	Cynoglossus_semilaevis
ENSSMAG00000014342	polr1a	100	81.102	ENSCVAG00000020941	polr1a	100	81.291	Cyprinodon_variegatus
ENSSMAG00000014342	polr1a	100	71.796	ENSDARG00000098375	polr1a	100	72.030	Danio_rerio
ENSSMAG00000014342	polr1a	100	61.946	ENSDNOG00000010829	POLR1A	100	62.449	Dasypus_novemcinctus
ENSSMAG00000014342	polr1a	100	64.798	ENSDORG00000008298	Polr1a	100	65.170	Dipodomys_ordii
ENSSMAG00000014342	polr1a	74	49.062	FBgn0019938	RpI1	99	43.229	Drosophila_melanogaster
ENSSMAG00000014342	polr1a	72	90.625	ENSETEG00000000412	-	71	90.625	Echinops_telfairi
ENSSMAG00000014342	polr1a	89	47.708	ENSEBUG00000005667	-	99	47.714	Eptatretus_burgeri
ENSSMAG00000014342	polr1a	100	66.184	ENSEASG00005001625	POLR1A	100	66.319	Equus_asinus_asinus
ENSSMAG00000014342	polr1a	100	65.992	ENSECAG00000010092	POLR1A	99	70.228	Equus_caballus
ENSSMAG00000014342	polr1a	100	65.992	ENSECAG00000030510	-	99	70.228	Equus_caballus
ENSSMAG00000014342	polr1a	100	65.992	ENSECAG00000036306	-	99	70.228	Equus_caballus
ENSSMAG00000014342	polr1a	86	76.622	ENSEEUG00000000676	POLR1A	85	76.622	Erinaceus_europaeus
ENSSMAG00000014342	polr1a	100	74.577	ENSELUG00000012769	polr1a	99	74.636	Esox_lucius
ENSSMAG00000014342	polr1a	100	66.088	ENSFCAG00000008966	POLR1A	100	66.261	Felis_catus
ENSSMAG00000014342	polr1a	99	65.439	ENSFALG00000010082	POLR1A	99	65.667	Ficedula_albicollis
ENSSMAG00000014342	polr1a	100	65.240	ENSFDAG00000013726	POLR1A	100	65.591	Fukomys_damarensis
ENSSMAG00000014342	polr1a	100	76.759	ENSFHEG00000005996	polr1a	100	76.996	Fundulus_heteroclitus
ENSSMAG00000014342	polr1a	100	70.994	ENSGMOG00000002230	polr1a	100	71.030	Gadus_morhua
ENSSMAG00000014342	polr1a	89	63.948	ENSGALG00000038160	-	98	63.990	Gallus_gallus
ENSSMAG00000014342	polr1a	100	79.940	ENSGAFG00000015266	polr1a	100	79.976	Gambusia_affinis
ENSSMAG00000014342	polr1a	100	81.297	ENSGACG00000018791	polr1a	100	81.333	Gasterosteus_aculeatus
ENSSMAG00000014342	polr1a	91	65.800	ENSGAGG00000004984	-	95	72.144	Gopherus_agassizii
ENSSMAG00000014342	polr1a	100	66.165	ENSGGOG00000001788	POLR1A	100	66.358	Gorilla_gorilla
ENSSMAG00000014342	polr1a	89	83.786	ENSHBUG00000020021	polr1a	99	83.786	Haplochromis_burtoni
ENSSMAG00000014342	polr1a	100	65.434	ENSHGLG00000006334	POLR1A	100	65.802	Heterocephalus_glaber_female
ENSSMAG00000014342	polr1a	100	65.245	ENSHGLG00100006614	POLR1A	100	65.612	Heterocephalus_glaber_male
ENSSMAG00000014342	polr1a	100	78.864	ENSHCOG00000003345	polr1a	100	78.851	Hippocampus_comes
ENSSMAG00000014342	polr1a	100	71.028	ENSIPUG00000013174	polr1a	100	71.186	Ictalurus_punctatus
ENSSMAG00000014342	polr1a	99	65.129	ENSSTOG00000012580	POLR1A	100	65.192	Ictidomys_tridecemlineatus
ENSSMAG00000014342	polr1a	100	65.545	ENSJJAG00000013113	Polr1a	100	65.629	Jaculus_jaculus
ENSSMAG00000014342	polr1a	100	83.669	ENSKMAG00000007399	polr1a	100	83.787	Kryptolebias_marmoratus
ENSSMAG00000014342	polr1a	100	82.221	ENSLBEG00000015401	polr1a	99	86.801	Labrus_bergylta
ENSSMAG00000014342	polr1a	53	70.076	ENSLACG00000003218	polr1a	100	70.076	Latimeria_chalumnae
ENSSMAG00000014342	polr1a	100	71.503	ENSLOCG00000010881	polr1a	100	71.578	Lepisosteus_oculatus
ENSSMAG00000014342	polr1a	100	65.914	ENSLAFG00000014948	POLR1A	100	66.088	Loxodonta_africana
ENSSMAG00000014342	polr1a	100	65.895	ENSMFAG00000046097	POLR1A	100	66.377	Macaca_fascicularis
ENSSMAG00000014342	polr1a	100	65.895	ENSMMUG00000015815	POLR1A	100	66.377	Macaca_mulatta
ENSSMAG00000014342	polr1a	100	65.895	ENSMNEG00000043313	POLR1A	100	66.377	Macaca_nemestrina
ENSSMAG00000014342	polr1a	100	65.489	ENSMLEG00000042428	POLR1A	100	66.204	Mandrillus_leucophaeus
ENSSMAG00000014342	polr1a	100	85.757	ENSMAMG00000016565	polr1a	100	85.757	Mastacembelus_armatus
ENSSMAG00000014342	polr1a	100	85.807	ENSMZEG00005004915	polr1a	100	85.200	Maylandia_zebra
ENSSMAG00000014342	polr1a	99	63.173	ENSMGAG00000013111	POLR1A	99	63.289	Meleagris_gallopavo
ENSSMAG00000014342	polr1a	91	64.295	ENSMAUG00000008497	Polr1a	100	64.943	Mesocricetus_auratus
ENSSMAG00000014342	polr1a	100	65.665	ENSMICG00000000757	POLR1A	100	65.913	Microcebus_murinus
ENSSMAG00000014342	polr1a	100	65.110	ENSMOCG00000000122	Polr1a	100	65.499	Microtus_ochrogaster
ENSSMAG00000014342	polr1a	100	81.317	ENSMMOG00000010216	polr1a	100	81.435	Mola_mola
ENSSMAG00000014342	polr1a	100	61.929	ENSMODG00000009335	POLR1A	100	61.848	Monodelphis_domestica
ENSSMAG00000014342	polr1a	100	85.664	ENSMALG00000013363	polr1a	100	85.664	Monopterus_albus
ENSSMAG00000014342	polr1a	100	64.505	MGP_CAROLIEiJ_G0028494	Polr1a	100	64.421	Mus_caroli
ENSSMAG00000014342	polr1a	100	64.364	ENSMUSG00000049553	Polr1a	100	64.459	Mus_musculus
ENSSMAG00000014342	polr1a	100	65.006	MGP_PahariEiJ_G0022230	Polr1a	100	65.411	Mus_pahari
ENSSMAG00000014342	polr1a	100	63.362	MGP_SPRETEiJ_G0029499	Polr1a	100	63.667	Mus_spretus
ENSSMAG00000014342	polr1a	100	65.913	ENSMPUG00000009135	POLR1A	100	66.261	Mustela_putorius_furo
ENSSMAG00000014342	polr1a	100	65.260	ENSMLUG00000015723	POLR1A	100	65.549	Myotis_lucifugus
ENSSMAG00000014342	polr1a	100	65.041	ENSNGAG00000017907	Polr1a	100	64.963	Nannospalax_galili
ENSSMAG00000014342	polr1a	100	85.310	ENSNBRG00000000519	polr1a	100	85.024	Neolamprologus_brichardi
ENSSMAG00000014342	polr1a	100	64.269	ENSNLEG00000002264	POLR1A	100	63.970	Nomascus_leucogenys
ENSSMAG00000014342	polr1a	75	84.252	ENSMEUG00000011665	-	76	84.252	Notamacropus_eugenii
ENSSMAG00000014342	polr1a	96	71.277	ENSOPRG00000008269	POLR1A	95	71.277	Ochotona_princeps
ENSSMAG00000014342	polr1a	100	65.414	ENSODEG00000003542	POLR1A	100	65.476	Octodon_degus
ENSSMAG00000014342	polr1a	100	85.203	ENSONIG00000015895	polr1a	100	85.203	Oreochromis_niloticus
ENSSMAG00000014342	polr1a	100	65.683	ENSOCUG00000010138	POLR1A	100	66.241	Oryctolagus_cuniculus
ENSSMAG00000014342	polr1a	100	81.028	ENSORLG00000008753	polr1a	99	81.087	Oryzias_latipes
ENSSMAG00000014342	polr1a	100	77.608	ENSORLG00020020726	polr1a	99	77.653	Oryzias_latipes_hni
ENSSMAG00000014342	polr1a	95	89.362	ENSORLG00015016071	polr1a	98	89.362	Oryzias_latipes_hsok
ENSSMAG00000014342	polr1a	100	65.703	ENSOGAG00000004031	POLR1A	100	66.088	Otolemur_garnettii
ENSSMAG00000014342	polr1a	100	66.474	ENSOARG00000020601	POLR1A	100	66.168	Ovis_aries
ENSSMAG00000014342	polr1a	100	66.050	ENSPPAG00000042450	POLR1A	100	66.243	Pan_paniscus
ENSSMAG00000014342	polr1a	100	66.204	ENSPPRG00000006702	POLR1A	100	66.377	Panthera_pardus
ENSSMAG00000014342	polr1a	100	65.802	ENSPTIG00000018783	POLR1A	100	65.973	Panthera_tigris_altaica
ENSSMAG00000014342	polr1a	100	66.108	ENSPTRG00000012147	POLR1A	100	66.243	Pan_troglodytes
ENSSMAG00000014342	polr1a	100	66.126	ENSPANG00000025908	POLR1A	100	66.435	Papio_anubis
ENSSMAG00000014342	polr1a	100	70.943	ENSPKIG00000005468	polr1a	98	73.611	Paramormyrops_kingsleyae
ENSSMAG00000014342	polr1a	66	65.501	ENSPSIG00000009321	-	99	65.833	Pelodiscus_sinensis
ENSSMAG00000014342	polr1a	55	81.630	ENSPMGG00000009718	polr1a	95	81.630	Periophthalmus_magnuspinnatus
ENSSMAG00000014342	polr1a	100	65.235	ENSPEMG00000022224	Polr1a	100	65.295	Peromyscus_maniculatus_bairdii
ENSSMAG00000014342	polr1a	95	64.124	ENSPCIG00000004222	POLR1A	99	64.390	Phascolarctos_cinereus
ENSSMAG00000014342	polr1a	100	81.191	ENSPFOG00000005025	polr1a	100	81.309	Poecilia_formosa
ENSSMAG00000014342	polr1a	100	81.135	ENSPLAG00000021389	polr1a	100	81.346	Poecilia_latipinna
ENSSMAG00000014342	polr1a	100	78.361	ENSPMEG00000006463	polr1a	100	78.904	Poecilia_mexicana
ENSSMAG00000014342	polr1a	100	80.670	ENSPREG00000002389	polr1a	100	80.925	Poecilia_reticulata
ENSSMAG00000014342	polr1a	100	65.721	ENSPPYG00000012217	POLR1A	100	65.438	Pongo_abelii
ENSSMAG00000014342	polr1a	91	65.581	ENSPCAG00000011582	POLR1A	91	65.581	Procavia_capensis
ENSSMAG00000014342	polr1a	100	66.262	ENSPCOG00000026987	POLR1A	100	66.377	Propithecus_coquereli
ENSSMAG00000014342	polr1a	95	65.591	ENSPVAG00000012674	POLR1A	95	65.563	Pteropus_vampyrus
ENSSMAG00000014342	polr1a	100	85.495	ENSPNYG00000000026	polr1a	100	85.142	Pundamilia_nyererei
ENSSMAG00000014342	polr1a	100	71.804	ENSPNAG00000019223	polr1a	100	71.979	Pygocentrus_nattereri
ENSSMAG00000014342	polr1a	100	64.945	ENSRNOG00000009545	Polr1a	100	65.009	Rattus_norvegicus
ENSSMAG00000014342	polr1a	100	66.107	ENSRBIG00000028335	POLR1A	100	66.242	Rhinopithecus_bieti
ENSSMAG00000014342	polr1a	100	66.165	ENSRROG00000031473	POLR1A	100	66.300	Rhinopithecus_roxellana
ENSSMAG00000014342	polr1a	94	44.615	YOR341W	RPA190	99	36.519	Saccharomyces_cerevisiae
ENSSMAG00000014342	polr1a	100	65.159	ENSSBOG00000030262	POLR1A	100	66.049	Saimiri_boliviensis_boliviensis
ENSSMAG00000014342	polr1a	100	60.080	ENSSHAG00000014739	POLR1A	100	60.321	Sarcophilus_harrisii
ENSSMAG00000014342	polr1a	100	71.462	ENSSFOG00015019716	polr1a	100	71.522	Scleropages_formosus
ENSSMAG00000014342	polr1a	100	89.138	ENSSDUG00000014631	polr1a	100	89.374	Seriola_dumerili
ENSSMAG00000014342	polr1a	100	85.541	ENSSLDG00000024095	polr1a	100	85.541	Seriola_lalandi_dorsalis
ENSSMAG00000014342	polr1a	70	95.122	ENSSARG00000003136	-	71	95.122	Sorex_araneus
ENSSMAG00000014342	polr1a	95	73.000	ENSSPUG00000004215	POLR1A	98	73.000	Sphenodon_punctatus
ENSSMAG00000014342	polr1a	68	82.877	ENSSPAG00000016341	polr1a	100	81.802	Stegastes_partitus
ENSSMAG00000014342	polr1a	83	66.573	ENSSSCG00000008226	POLR1A	99	66.573	Sus_scrofa
ENSSMAG00000014342	polr1a	99	65.194	ENSTGUG00000010704	POLR1A	100	65.215	Taeniopygia_guttata
ENSSMAG00000014342	polr1a	100	79.658	ENSTRUG00000002210	polr1a	99	79.329	Takifugu_rubripes
ENSSMAG00000014342	polr1a	100	73.749	ENSTNIG00000010116	polr1a	100	73.620	Tetraodon_nigroviridis
ENSSMAG00000014342	polr1a	73	82.743	ENSTBEG00000008646	POLR1A	74	82.743	Tupaia_belangeri
ENSSMAG00000014342	polr1a	100	64.120	ENSTTRG00000008597	POLR1A	100	64.248	Tursiops_truncatus
ENSSMAG00000014342	polr1a	72	66.302	ENSUAMG00000012158	-	94	67.117	Ursus_americanus
ENSSMAG00000014342	polr1a	100	65.517	ENSUMAG00000006700	POLR1A	97	69.296	Ursus_maritimus
ENSSMAG00000014342	polr1a	100	66.125	ENSVVUG00000001245	POLR1A	100	66.125	Vulpes_vulpes
ENSSMAG00000014342	polr1a	100	61.390	ENSXETG00000001952	polr1a	99	63.447	Xenopus_tropicalis
ENSSMAG00000014342	polr1a	100	81.591	ENSXMAG00000004032	polr1a	100	81.678	Xiphophorus_maculatus