EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSMAG00000015145 (Gene tree)
Gene ID: -
Gene Symbol: tnrc6c2
Alias: si:dkey-10p5.9
Full Name: trinucleotide repeat containing 6C2
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Minus strand
Length: 14954 bases
Position: chr8:13632209-13647162
Accession: ZDB-GENE-061207-48
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000024793	Ago_hook	PF10427.9	1.6e-09	1	1
ENSSMAP00000024793	RRM_1	PF00076.22	0.00016	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000025093	-	5177	-	ENSSMAP00000024793	1639 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000015145's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000015145's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSMAG00000015145	tnrc6c2	100	55.543	ENSSMAG00000012761	tnrc6c1	100	54.171

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000015145	tnrc6c2	100	86.344	ENSAOCG00000017648	tnrc6c2	87	86.586	Amphiprion_ocellaris
ENSSMAG00000015145	tnrc6c2	100	85.879	ENSACLG00000006469	tnrc6c2	88	85.576	Astatotilapia_calliptera
ENSSMAG00000015145	tnrc6c2	100	58.422	ENSAMXG00000009579	tnrc6c2	99	57.041	Astyanax_mexicanus
ENSSMAG00000015145	tnrc6c2	100	58.705	ENSDARG00000103851	tnrc6c2	100	55.162	Danio_rerio
ENSSMAG00000015145	tnrc6c2	91	67.318	ENSELUG00000008149	-	88	72.868	Esox_lucius
ENSSMAG00000015145	tnrc6c2	100	60.899	ENSELUG00000007206	tnrc6c2	99	59.727	Esox_lucius
ENSSMAG00000015145	tnrc6c2	100	80.109	ENSFHEG00000003901	tnrc6c2	100	79.686	Fundulus_heteroclitus
ENSSMAG00000015145	tnrc6c2	57	81.543	ENSGACG00000019401	tnrc6c2	90	77.433	Gasterosteus_aculeatus
ENSSMAG00000015145	tnrc6c2	100	85.818	ENSHBUG00000018310	tnrc6c2	88	85.515	Haplochromis_burtoni
ENSSMAG00000015145	tnrc6c2	100	80.433	ENSHCOG00000017802	tnrc6c2	87	79.651	Hippocampus_comes
ENSSMAG00000015145	tnrc6c2	100	53.832	ENSIPUG00000022767	tnrc6c2	99	52.151	Ictalurus_punctatus
ENSSMAG00000015145	tnrc6c2	100	87.424	ENSMAMG00000001718	tnrc6c2	100	87.424	Mastacembelus_armatus
ENSSMAG00000015145	tnrc6c2	100	85.879	ENSMZEG00005023905	tnrc6c2	88	85.576	Maylandia_zebra
ENSSMAG00000015145	tnrc6c2	100	85.568	ENSMALG00000020932	tnrc6c2	100	85.448	Monopterus_albus
ENSSMAG00000015145	tnrc6c2	95	86.909	ENSNBRG00000000452	tnrc6c2	57	86.909	Neolamprologus_brichardi
ENSSMAG00000015145	tnrc6c2	98	81.537	ENSONIG00000018123	tnrc6c2	97	90.700	Oreochromis_niloticus
ENSSMAG00000015145	tnrc6c2	100	80.254	ENSORLG00000003327	tnrc6c2	87	79.709	Oryzias_latipes
ENSSMAG00000015145	tnrc6c2	100	80.073	ENSORLG00020010730	tnrc6c2	87	79.649	Oryzias_latipes_hni
ENSSMAG00000015145	tnrc6c2	100	80.436	ENSORLG00015009232	tnrc6c2	87	80.012	Oryzias_latipes_hsok
ENSSMAG00000015145	tnrc6c2	100	80.725	ENSOMEG00000017952	tnrc6c2	87	80.363	Oryzias_melastigma
ENSSMAG00000015145	tnrc6c2	95	75.186	ENSPFOG00000011590	tnrc6c2	90	76.564	Poecilia_formosa
ENSSMAG00000015145	tnrc6c2	100	74.526	ENSPLAG00000006992	tnrc6c2	60	85.053	Poecilia_latipinna
ENSSMAG00000015145	tnrc6c2	100	81.258	ENSPMEG00000012946	tnrc6c2	93	81.741	Poecilia_mexicana
ENSSMAG00000015145	tnrc6c2	100	75.345	ENSPREG00000015823	tnrc6c2	60	85.576	Poecilia_reticulata
ENSSMAG00000015145	tnrc6c2	100	84.867	ENSPNYG00000002582	tnrc6c2	100	84.927	Pundamilia_nyererei
ENSSMAG00000015145	tnrc6c2	100	57.531	ENSPNAG00000026838	tnrc6c2	99	57.254	Pygocentrus_nattereri
ENSSMAG00000015145	tnrc6c2	100	90.000	ENSSDUG00000020741	tnrc6c2	100	90.182	Seriola_dumerili
ENSSMAG00000015145	tnrc6c2	100	89.879	ENSSLDG00000002077	tnrc6c2	100	90.061	Seriola_lalandi_dorsalis
ENSSMAG00000015145	tnrc6c2	100	87.802	ENSSPAG00000013052	tnrc6c2	87	88.406	Stegastes_partitus
ENSSMAG00000015145	tnrc6c2	92	83.790	ENSTNIG00000004178	tnrc6c2	89	83.571	Tetraodon_nigroviridis
ENSSMAG00000015145	tnrc6c2	55	83.280	ENSXCOG00000013252	tnrc6c2	100	76.081	Xiphophorus_couchianus
ENSSMAG00000015145	tnrc6c2	100	80.665	ENSXMAG00000006739	tnrc6c2	100	80.906	Xiphophorus_maculatus