EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSMAG00000015505 (Gene tree)
Gene ID: -
Gene Symbol: rbfox1
Alias: a2bp1|zgc:103635
Full Name: RNA binding fox-1 homolog 1
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Plus strand
Length: 178018 bases
Position: chr19:1595633-1773650
Accession: ZDB-GENE-040927-11
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000025325	Fox-1_C	PF12414.8	7.4e-44	1	1
ENSSMAP00000025393	Fox-1_C	PF12414.8	7.7e-44	1	1
ENSSMAP00000025345	Fox-1_C	PF12414.8	8.4e-44	1	1
ENSSMAP00000025369	Fox-1_C	PF12414.8	9.3e-44	1	1
ENSSMAP00000025448	Fox-1_C	PF12414.8	3.1e-25	1	2
ENSSMAP00000025448	Fox-1_C	PF12414.8	3.1e-25	2	2
ENSSMAP00000025325	RRM_1	PF00076.22	2e-17	1	1
ENSSMAP00000025393	RRM_1	PF00076.22	2.1e-17	1	1
ENSSMAP00000025345	RRM_1	PF00076.22	2.3e-17	1	1
ENSSMAP00000025369	RRM_1	PF00076.22	2.5e-17	1	1
ENSSMAP00000025448	RRM_1	PF00076.22	1.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000025627	-	3970	-	ENSSMAP00000025325	360 (aa)	-	-
ENSSMAT00000025647	-	4316	-	ENSSMAP00000025345	386 (aa)	-	-
ENSSMAT00000025674	-	4211	-	ENSSMAP00000025369	410 (aa)	-	-
ENSSMAT00000025702	-	3990	-	ENSSMAP00000025393	367 (aa)	-	-
ENSSMAT00000025758	-	1194	-	ENSSMAP00000025448	397 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000015505's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000015505's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSMAG00000015505	rbfox1	95	52.846	ENSSMAG00000013090	rbfox1l	96	48.578
ENSSMAG00000015505	rbfox1	65	64.528	ENSSMAG00000004317	-	72	57.792
ENSSMAG00000015505	rbfox1	94	66.947	ENSSMAG00000012618	rbfox3b	78	65.746
ENSSMAG00000015505	rbfox1	64	69.020	ENSSMAG00000013662	rbfox2	57	68.321
ENSSMAG00000015505	rbfox1	95	66.377	ENSSMAG00000019052	-	100	67.278

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000015505	rbfox1	93	82.152	ENSG00000078328	RBFOX1	98	82.322	Homo_sapiens
ENSSMAG00000015505	rbfox1	100	95.631	ENSAPOG00000003197	rbfox1	100	95.631	Acanthochromis_polyacanthus
ENSSMAG00000015505	rbfox1	65	74.786	ENSAMEG00000008605	RBFOX1	93	72.984	Ailuropoda_melanoleuca
ENSSMAG00000015505	rbfox1	68	76.015	ENSACIG00000005478	rbfox1	74	71.331	Amphilophus_citrinellus
ENSSMAG00000015505	rbfox1	79	92.491	ENSAOCG00000008283	rbfox1	100	92.150	Amphiprion_ocellaris
ENSSMAG00000015505	rbfox1	89	74.607	ENSAPEG00000010636	rbfox1	100	75.916	Amphiprion_percula
ENSSMAG00000015505	rbfox1	80	92.038	ENSATEG00000007513	rbfox1	100	92.038	Anabas_testudineus
ENSSMAG00000015505	rbfox1	93	76.585	ENSAPLG00000013263	RBFOX1	98	76.829	Anas_platyrhynchos
ENSSMAG00000015505	rbfox1	92	74.572	ENSACAG00000004013	RBFOX1	98	74.572	Anolis_carolinensis
ENSSMAG00000015505	rbfox1	93	82.677	ENSANAG00000029527	RBFOX1	97	82.940	Aotus_nancymaae
ENSSMAG00000015505	rbfox1	68	77.820	ENSAMXG00000002431	rbfox1	73	77.820	Astyanax_mexicanus
ENSSMAG00000015505	rbfox1	93	74.083	ENSBTAG00000007210	RBFOX1	98	74.328	Bos_taurus
ENSSMAG00000015505	rbfox1	96	78.734	ENSCJAG00000017351	RBFOX1	97	78.987	Callithrix_jacchus
ENSSMAG00000015505	rbfox1	96	73.460	ENSCAFG00000019082	RBFOX1	97	73.697	Canis_familiaris
ENSSMAG00000015505	rbfox1	72	69.231	ENSCAFG00020024881	RBFOX1	79	68.000	Canis_lupus_dingo
ENSSMAG00000015505	rbfox1	93	74.083	ENSCHIG00000023549	RBFOX1	98	74.328	Capra_hircus
ENSSMAG00000015505	rbfox1	94	80.473	ENSTSYG00000005334	RBFOX1	100	82.540	Carlito_syrichta
ENSSMAG00000015505	rbfox1	96	73.460	ENSCAPG00000017669	RBFOX1	100	77.284	Cavia_aperea
ENSSMAG00000015505	rbfox1	96	73.460	ENSCPOG00000011314	RBFOX1	99	77.094	Cavia_porcellus
ENSSMAG00000015505	rbfox1	93	82.677	ENSCCAG00000023031	RBFOX1	97	82.940	Cebus_capucinus
ENSSMAG00000015505	rbfox1	93	82.152	ENSCATG00000033816	RBFOX1	97	82.415	Cercocebus_atys
ENSSMAG00000015505	rbfox1	96	73.223	ENSCLAG00000012761	RBFOX1	98	76.847	Chinchilla_lanigera
ENSSMAG00000015505	rbfox1	90	72.080	ENSCSAG00000008739	RBFOX1	91	72.346	Chlorocebus_sabaeus
ENSSMAG00000015505	rbfox1	80	72.174	ENSCHOG00000012843	RBFOX1	67	89.231	Choloepus_hoffmanni
ENSSMAG00000015505	rbfox1	100	82.524	ENSCPBG00000026626	RBFOX1	96	82.767	Chrysemys_picta_bellii
ENSSMAG00000015505	rbfox1	93	82.152	ENSCANG00000033125	RBFOX1	97	82.415	Colobus_angolensis_palliatus
ENSSMAG00000015505	rbfox1	96	72.577	ENSCGRG00001013729	Rbfox1	98	76.355	Cricetulus_griseus_chok1gshd
ENSSMAG00000015505	rbfox1	96	72.577	ENSCGRG00000003272	Rbfox1	98	76.355	Cricetulus_griseus_crigri
ENSSMAG00000015505	rbfox1	91	86.970	ENSCSEG00000008840	rbfox1	100	85.946	Cynoglossus_semilaevis
ENSSMAG00000015505	rbfox1	96	82.267	ENSDARG00000014746	rbfox1	99	83.073	Danio_rerio
ENSSMAG00000015505	rbfox1	99	73.963	ENSDNOG00000043612	RBFOX1	99	74.253	Dasypus_novemcinctus
ENSSMAG00000015505	rbfox1	98	72.494	ENSDORG00000010024	Rbfox1	100	74.641	Dipodomys_ordii
ENSSMAG00000015505	rbfox1	96	63.744	ENSETEG00000003771	RBFOX1	97	63.981	Echinops_telfairi
ENSSMAG00000015505	rbfox1	100	77.449	ENSEASG00005011599	RBFOX1	97	77.677	Equus_asinus_asinus
ENSSMAG00000015505	rbfox1	100	76.540	ENSECAG00000012667	RBFOX1	96	76.777	Equus_caballus
ENSSMAG00000015505	rbfox1	80	56.875	ENSELUG00000013096	rbfox1	83	57.500	Esox_lucius
ENSSMAG00000015505	rbfox1	100	82.524	ENSFCAG00000025322	RBFOX1	96	82.767	Felis_catus
ENSSMAG00000015505	rbfox1	88	72.965	ENSFALG00000004027	RBFOX1	99	73.410	Ficedula_albicollis
ENSSMAG00000015505	rbfox1	96	73.223	ENSFDAG00000007388	RBFOX1	98	76.847	Fukomys_damarensis
ENSSMAG00000015505	rbfox1	100	70.776	ENSGALG00000034325	RBFOX1	98	71.005	Gallus_gallus
ENSSMAG00000015505	rbfox1	96	77.525	ENSGAGG00000023681	RBFOX1	100	76.081	Gopherus_agassizii
ENSSMAG00000015505	rbfox1	93	82.152	ENSGGOG00000016871	-	97	82.415	Gorilla_gorilla
ENSSMAG00000015505	rbfox1	96	73.223	ENSHGLG00000016944	RBFOX1	98	76.847	Heterocephalus_glaber_female
ENSSMAG00000015505	rbfox1	96	73.223	ENSHGLG00100003272	RBFOX1	98	76.847	Heterocephalus_glaber_male
ENSSMAG00000015505	rbfox1	92	84.776	ENSHCOG00000016419	rbfox1	93	85.075	Hippocampus_comes
ENSSMAG00000015505	rbfox1	100	76.513	ENSIPUG00000015215	rbfox1	100	83.333	Ictalurus_punctatus
ENSSMAG00000015505	rbfox1	96	73.223	ENSSTOG00000000322	RBFOX1	100	75.366	Ictidomys_tridecemlineatus
ENSSMAG00000015505	rbfox1	96	72.749	ENSJJAG00000002575	Rbfox1	98	75.123	Jaculus_jaculus
ENSSMAG00000015505	rbfox1	99	89.444	ENSLBEG00000014659	rbfox1	100	90.278	Labrus_bergylta
ENSSMAG00000015505	rbfox1	94	76.145	ENSLOCG00000006675	rbfox1	100	76.386	Lepisosteus_oculatus
ENSSMAG00000015505	rbfox1	69	82.258	ENSLAFG00000011480	RBFOX1	100	82.258	Loxodonta_africana
ENSSMAG00000015505	rbfox1	93	81.890	ENSMFAG00000036447	RBFOX1	97	82.152	Macaca_fascicularis
ENSSMAG00000015505	rbfox1	93	81.890	ENSMMUG00000003458	RBFOX1	97	82.152	Macaca_mulatta
ENSSMAG00000015505	rbfox1	96	72.512	ENSMNEG00000032034	RBFOX1	97	72.749	Macaca_nemestrina
ENSSMAG00000015505	rbfox1	93	82.152	ENSMLEG00000015382	RBFOX1	97	82.415	Mandrillus_leucophaeus
ENSSMAG00000015505	rbfox1	91	89.571	ENSMAMG00000003142	rbfox1	100	90.984	Mastacembelus_armatus
ENSSMAG00000015505	rbfox1	77	70.455	ENSMGAG00000008606	RBFOX1	98	69.967	Meleagris_gallopavo
ENSSMAG00000015505	rbfox1	91	44.560	ENSMAUG00000020570	Rbfox1	95	44.186	Mesocricetus_auratus
ENSSMAG00000015505	rbfox1	95	80.818	ENSMICG00000034286	RBFOX1	99	81.074	Microcebus_murinus
ENSSMAG00000015505	rbfox1	96	72.577	ENSMOCG00000020932	Rbfox1	100	76.559	Microtus_ochrogaster
ENSSMAG00000015505	rbfox1	91	83.180	ENSMMOG00000009716	rbfox1	86	80.982	Mola_mola
ENSSMAG00000015505	rbfox1	86	73.134	ENSMODG00000005826	RBFOX1	90	73.433	Monodelphis_domestica
ENSSMAG00000015505	rbfox1	100	91.220	ENSMALG00000003337	rbfox1	98	90.237	Monopterus_albus
ENSSMAG00000015505	rbfox1	96	72.577	MGP_CAROLIEiJ_G0020427	Rbfox1	98	76.355	Mus_caroli
ENSSMAG00000015505	rbfox1	93	75.980	ENSMUSG00000008658	Rbfox1	99	87.121	Mus_musculus
ENSSMAG00000015505	rbfox1	96	72.577	MGP_PahariEiJ_G0016135	Rbfox1	98	76.355	Mus_pahari
ENSSMAG00000015505	rbfox1	96	72.577	MGP_SPRETEiJ_G0021321	Rbfox1	98	76.355	Mus_spretus
ENSSMAG00000015505	rbfox1	89	71.920	ENSMPUG00000014822	RBFOX1	88	71.074	Mustela_putorius_furo
ENSSMAG00000015505	rbfox1	69	82.524	ENSMLUG00000015896	RBFOX1	100	82.524	Myotis_lucifugus
ENSSMAG00000015505	rbfox1	96	74.109	ENSNGAG00000023276	Rbfox1	100	76.790	Nannospalax_galili
ENSSMAG00000015505	rbfox1	93	70.025	ENSNBRG00000011084	rbfox1	95	69.779	Neolamprologus_brichardi
ENSSMAG00000015505	rbfox1	93	81.890	ENSNLEG00000010017	-	97	82.152	Nomascus_leucogenys
ENSSMAG00000015505	rbfox1	76	92.308	ENSMEUG00000012525	RBFOX1	71	92.308	Notamacropus_eugenii
ENSSMAG00000015505	rbfox1	85	72.984	ENSOPRG00000006199	-	81	70.076	Ochotona_princeps
ENSSMAG00000015505	rbfox1	93	76.413	ENSODEG00000013166	RBFOX1	98	76.847	Octodon_degus
ENSSMAG00000015505	rbfox1	90	71.510	ENSOANG00000002379	RBFOX1	91	71.508	Ornithorhynchus_anatinus
ENSSMAG00000015505	rbfox1	66	74.684	ENSOCUG00000001205	-	99	75.000	Oryctolagus_cuniculus
ENSSMAG00000015505	rbfox1	96	73.315	ENSOGAG00000025535	RBFOX1	98	76.601	Otolemur_garnettii
ENSSMAG00000015505	rbfox1	65	65.385	ENSOARG00000005135	RBFOX1	86	70.283	Ovis_aries
ENSSMAG00000015505	rbfox1	94	80.473	ENSPPAG00000036238	-	100	82.540	Pan_paniscus
ENSSMAG00000015505	rbfox1	95	81.701	ENSPPRG00000006546	RBFOX1	99	81.330	Panthera_pardus
ENSSMAG00000015505	rbfox1	93	70.361	ENSPTIG00000021154	RBFOX1	100	69.948	Panthera_tigris_altaica
ENSSMAG00000015505	rbfox1	93	82.152	ENSPTRG00000007744	RBFOX1	97	82.415	Pan_troglodytes
ENSSMAG00000015505	rbfox1	93	82.152	ENSPANG00000026500	RBFOX1	97	82.415	Papio_anubis
ENSSMAG00000015505	rbfox1	97	79.551	ENSPKIG00000009667	-	95	81.972	Paramormyrops_kingsleyae
ENSSMAG00000015505	rbfox1	81	79.936	ENSPKIG00000019353	rbfox1	89	79.936	Paramormyrops_kingsleyae
ENSSMAG00000015505	rbfox1	93	76.716	ENSPSIG00000006523	RBFOX1	98	76.961	Pelodiscus_sinensis
ENSSMAG00000015505	rbfox1	96	72.577	ENSPEMG00000017607	Rbfox1	98	76.355	Peromyscus_maniculatus_bairdii
ENSSMAG00000015505	rbfox1	64	78.351	ENSPCIG00000026887	RBFOX1	100	78.351	Phascolarctos_cinereus
ENSSMAG00000015505	rbfox1	89	72.206	ENSPPYG00000007079	-	88	71.074	Pongo_abelii
ENSSMAG00000015505	rbfox1	94	66.576	ENSPCAG00000002630	RBFOX1	97	64.921	Procavia_capensis
ENSSMAG00000015505	rbfox1	95	81.074	ENSPCOG00000025687	RBFOX1	99	81.330	Propithecus_coquereli
ENSSMAG00000015505	rbfox1	96	69.668	ENSPVAG00000013467	RBFOX1	97	69.668	Pteropus_vampyrus
ENSSMAG00000015505	rbfox1	89	79.481	ENSPNAG00000023109	rbfox1	100	79.740	Pygocentrus_nattereri
ENSSMAG00000015505	rbfox1	96	74.408	ENSRNOG00000002827	Rbfox1	97	74.822	Rattus_norvegicus
ENSSMAG00000015505	rbfox1	94	80.473	ENSRBIG00000044478	RBFOX1	100	82.540	Rhinopithecus_bieti
ENSSMAG00000015505	rbfox1	93	82.152	ENSRROG00000044411	RBFOX1	97	82.415	Rhinopithecus_roxellana
ENSSMAG00000015505	rbfox1	93	82.677	ENSSBOG00000033726	RBFOX1	97	82.940	Saimiri_boliviensis_boliviensis
ENSSMAG00000015505	rbfox1	95	75.120	ENSSHAG00000009257	RBFOX1	98	77.284	Sarcophilus_harrisii
ENSSMAG00000015505	rbfox1	93	69.291	ENSSFOG00015023675	rbfox1	98	68.504	Scleropages_formosus
ENSSMAG00000015505	rbfox1	96	70.145	ENSSFOG00015009955	-	85	66.575	Scleropages_formosus
ENSSMAG00000015505	rbfox1	96	86.047	ENSSDUG00000016413	rbfox1	99	88.654	Seriola_dumerili
ENSSMAG00000015505	rbfox1	86	93.694	ENSSLDG00000009353	rbfox1	98	93.694	Seriola_lalandi_dorsalis
ENSSMAG00000015505	rbfox1	91	76.061	ENSSPUG00000009732	RBFOX1	87	76.596	Sphenodon_punctatus
ENSSMAG00000015505	rbfox1	94	93.529	ENSSPAG00000009723	rbfox1	100	93.684	Stegastes_partitus
ENSSMAG00000015505	rbfox1	94	73.569	ENSSSCG00000007917	RBFOX1	94	74.510	Sus_scrofa
ENSSMAG00000015505	rbfox1	92	77.094	ENSTGUG00000004562	RBFOX1	100	77.340	Taeniopygia_guttata
ENSSMAG00000015505	rbfox1	99	90.529	ENSTRUG00000020940	rbfox1	100	91.086	Takifugu_rubripes
ENSSMAG00000015505	rbfox1	67	67.014	ENSTNIG00000002567	rbfox1	100	69.444	Tetraodon_nigroviridis
ENSSMAG00000015505	rbfox1	58	88.971	ENSTBEG00000009169	-	56	88.971	Tupaia_belangeri
ENSSMAG00000015505	rbfox1	96	72.986	ENSTTRG00000005700	RBFOX1	97	73.223	Tursiops_truncatus
ENSSMAG00000015505	rbfox1	93	69.756	ENSUAMG00000024633	RBFOX1	100	73.867	Ursus_americanus
ENSSMAG00000015505	rbfox1	93	67.526	ENSUMAG00000003579	RBFOX1	100	66.753	Ursus_maritimus
ENSSMAG00000015505	rbfox1	69	79.355	ENSVPAG00000001284	RBFOX1	74	79.355	Vicugna_pacos
ENSSMAG00000015505	rbfox1	100	82.524	ENSVVUG00000017311	RBFOX1	96	82.767	Vulpes_vulpes