EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSMAG00000016274 (Gene tree)
Gene ID: -
Gene Symbol: srl
Alias: im:6899248|wu:fb94b10|zgc:153844
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Minus strand
Length: 17039 bases
Position: chr19:11416703-11433741
Accession: ZDB-GENE-061110-91
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000026660	MMR_HSR1	PF01926.23	1.4e-08	1	1
ENSSMAP00000026695	MMR_HSR1	PF01926.23	1.4e-08	1	1
ENSSMAP00000026651	MMR_HSR1	PF01926.23	1.5e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000026971	-	5549	-	ENSSMAP00000026651	483 (aa)	-	-
ENSSMAT00000027015	-	1374	-	ENSSMAP00000026695	457 (aa)	-	-
ENSSMAT00000026980	-	5513	-	ENSSMAP00000026660	471 (aa)	-	A0A2U9CTC8

Gene Model

Click here to download ENSSMAG00000016274's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000016274's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSMAG00000016274	srl	51	38.559	ENSSMAG00000020341	-	53	34.602
ENSSMAG00000016274	srl	96	75.385	ENSSMAG00000002232	SRL	50	75.385
ENSSMAG00000016274	srl	85	31.795	ENSSMAG00000018210	ehd1a	70	31.795
ENSSMAG00000016274	srl	81	31.903	ENSSMAG00000008537	ehd3	73	31.605
ENSSMAG00000016274	srl	89	32.212	ENSSMAG00000020558	ehd2b	74	32.212
ENSSMAG00000016274	srl	86	30.886	ENSSMAG00000002935	ehd4	70	30.886

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000016274	srl	100	79.704	ENSG00000185739	SRL	99	82.791	Homo_sapiens
ENSSMAG00000016274	srl	98	76.339	ENSAPOG00000012432	SRL	99	76.975	Acanthochromis_polyacanthus
ENSSMAG00000016274	srl	100	96.391	ENSAPOG00000018093	srl	100	96.391	Acanthochromis_polyacanthus
ENSSMAG00000016274	srl	98	81.778	ENSAMEG00000010862	SRL	51	81.778	Ailuropoda_melanoleuca
ENSSMAG00000016274	srl	98	96.882	ENSACIG00000015799	srl	100	97.118	Amphilophus_citrinellus
ENSSMAG00000016274	srl	98	74.777	ENSACIG00000015419	SRL	99	74.888	Amphilophus_citrinellus
ENSSMAG00000016274	srl	98	76.615	ENSAOCG00000017049	SRL	98	76.837	Amphiprion_ocellaris
ENSSMAG00000016274	srl	95	97.235	ENSAOCG00000007574	srl	100	97.235	Amphiprion_ocellaris
ENSSMAG00000016274	srl	100	96.603	ENSAPEG00000006911	srl	100	96.603	Amphiprion_percula
ENSSMAG00000016274	srl	99	72.210	ENSAPEG00000006533	SRL	98	73.719	Amphiprion_percula
ENSSMAG00000016274	srl	98	75.705	ENSATEG00000009643	SRL	53	75.922	Anabas_testudineus
ENSSMAG00000016274	srl	100	95.754	ENSATEG00000024315	srl	100	95.754	Anabas_testudineus
ENSSMAG00000016274	srl	100	80.123	ENSACAG00000016380	SRL	89	79.098	Anolis_carolinensis
ENSSMAG00000016274	srl	98	73.536	ENSACLG00000024674	SRL	54	76.750	Astatotilapia_calliptera
ENSSMAG00000016274	srl	100	95.966	ENSACLG00000027685	srl	100	95.966	Astatotilapia_calliptera
ENSSMAG00000016274	srl	92	77.857	ENSAMXG00000038693	SRL	100	73.951	Astyanax_mexicanus
ENSSMAG00000016274	srl	100	91.720	ENSAMXG00000018789	srl	92	91.494	Astyanax_mexicanus
ENSSMAG00000016274	srl	98	82.851	ENSBTAG00000001078	SRL	57	82.851	Bos_taurus
ENSSMAG00000016274	srl	97	82.579	ENSCJAG00000019750	SRL	93	82.579	Callithrix_jacchus
ENSSMAG00000016274	srl	98	81.556	ENSCAFG00000019233	SRL	84	81.556	Canis_familiaris
ENSSMAG00000016274	srl	98	81.556	ENSCAFG00020025024	SRL	55	81.737	Canis_lupus_dingo
ENSSMAG00000016274	srl	98	82.851	ENSCHIG00000017927	SRL	56	82.851	Capra_hircus
ENSSMAG00000016274	srl	98	82.444	ENSTSYG00000007919	SRL	99	83.488	Carlito_syrichta
ENSSMAG00000016274	srl	99	81.579	ENSCPOG00000012643	SRL	100	80.127	Cavia_porcellus
ENSSMAG00000016274	srl	97	77.149	ENSCCAG00000032646	SRL	100	83.905	Cebus_capucinus
ENSSMAG00000016274	srl	97	82.579	ENSCATG00000032227	-	93	82.579	Cercocebus_atys
ENSSMAG00000016274	srl	99	81.798	ENSCLAG00000016242	SRL	100	80.338	Chinchilla_lanigera
ENSSMAG00000016274	srl	84	85.195	ENSCHOG00000001618	SRL	52	85.195	Choloepus_hoffmanni
ENSSMAG00000016274	srl	98	84.715	ENSCPBG00000026371	SRL	99	80.124	Chrysemys_picta_bellii
ENSSMAG00000016274	srl	94	58.770	ENSCING00000005231	-	98	58.770	Ciona_intestinalis
ENSSMAG00000016274	srl	97	82.579	ENSCANG00000035872	SRL	99	82.791	Colobus_angolensis_palliatus
ENSSMAG00000016274	srl	99	82.276	ENSCGRG00001016630	Srl	100	80.973	Cricetulus_griseus_chok1gshd
ENSSMAG00000016274	srl	99	82.276	ENSCGRG00000005458	Srl	100	80.973	Cricetulus_griseus_crigri
ENSSMAG00000016274	srl	99	74.617	ENSCSEG00000011866	SRL	92	74.836	Cynoglossus_semilaevis
ENSSMAG00000016274	srl	100	95.117	ENSCSEG00000016151	srl	100	95.117	Cynoglossus_semilaevis
ENSSMAG00000016274	srl	98	76.201	ENSCVAG00000022465	SRL	61	76.201	Cyprinodon_variegatus
ENSSMAG00000016274	srl	100	92.994	ENSCVAG00000003513	srl	100	92.781	Cyprinodon_variegatus
ENSSMAG00000016274	srl	98	92.601	ENSDARG00000104587	srl	100	89.855	Danio_rerio
ENSSMAG00000016274	srl	83	78.385	ENSDARG00000112959	CABZ01072309.1	100	78.385	Danio_rerio
ENSSMAG00000016274	srl	98	82.000	ENSDNOG00000011643	SRL	55	81.140	Dasypus_novemcinctus
ENSSMAG00000016274	srl	99	82.237	ENSDORG00000014807	Srl	100	80.761	Dipodomys_ordii
ENSSMAG00000016274	srl	81	64.973	ENSEBUG00000015937	srl	94	64.973	Eptatretus_burgeri
ENSSMAG00000016274	srl	98	82.405	ENSEASG00005000942	SRL	54	82.405	Equus_asinus_asinus
ENSSMAG00000016274	srl	98	82.405	ENSECAG00000024219	SRL	99	80.508	Equus_caballus
ENSSMAG00000016274	srl	100	86.858	ENSELUG00000015616	srl	100	86.858	Esox_lucius
ENSSMAG00000016274	srl	97	82.127	ENSFCAG00000022075	SRL	100	79.493	Felis_catus
ENSSMAG00000016274	srl	98	81.250	ENSFALG00000004328	SRL	64	81.250	Ficedula_albicollis
ENSSMAG00000016274	srl	99	82.456	ENSFDAG00000006199	SRL	100	81.184	Fukomys_damarensis
ENSSMAG00000016274	srl	98	76.457	ENSFHEG00000011854	SRL	99	76.682	Fundulus_heteroclitus
ENSSMAG00000016274	srl	100	93.418	ENSFHEG00000011239	srl	100	93.206	Fundulus_heteroclitus
ENSSMAG00000016274	srl	97	88.987	ENSGMOG00000014954	srl	100	91.189	Gadus_morhua
ENSSMAG00000016274	srl	99	79.618	ENSGALG00000038884	SRL	99	79.618	Gallus_gallus
ENSSMAG00000016274	srl	98	77.679	ENSGAFG00000016984	SRL	99	77.803	Gambusia_affinis
ENSSMAG00000016274	srl	100	93.631	ENSGAFG00000000010	srl	100	93.418	Gambusia_affinis
ENSSMAG00000016274	srl	97	94.505	ENSGACG00000011332	srl	100	96.703	Gasterosteus_aculeatus
ENSSMAG00000016274	srl	100	79.704	ENSGGOG00000011312	-	93	82.579	Gorilla_gorilla
ENSSMAG00000016274	srl	100	95.966	ENSHBUG00000007581	srl	100	95.966	Haplochromis_burtoni
ENSSMAG00000016274	srl	98	73.970	ENSHBUG00000015710	SRL	57	74.074	Haplochromis_burtoni
ENSSMAG00000016274	srl	99	82.237	ENSHGLG00000015271	SRL	100	80.761	Heterocephalus_glaber_female
ENSSMAG00000016274	srl	99	82.237	ENSHGLG00100019378	SRL	100	80.761	Heterocephalus_glaber_male
ENSSMAG00000016274	srl	100	94.068	ENSHCOG00000008687	srl	100	94.678	Hippocampus_comes
ENSSMAG00000016274	srl	97	74.945	ENSHCOG00000001012	SRL	50	74.945	Hippocampus_comes
ENSSMAG00000016274	srl	95	69.725	ENSIPUG00000011609	SRL	95	69.725	Ictalurus_punctatus
ENSSMAG00000016274	srl	100	90.476	ENSIPUG00000012513	srl	100	90.476	Ictalurus_punctatus
ENSSMAG00000016274	srl	99	82.018	ENSSTOG00000021151	-	100	80.338	Ictidomys_tridecemlineatus
ENSSMAG00000016274	srl	100	81.395	ENSJJAG00000016400	Srl	100	81.395	Jaculus_jaculus
ENSSMAG00000016274	srl	96	77.324	ENSKMAG00000019537	SRL	100	77.324	Kryptolebias_marmoratus
ENSSMAG00000016274	srl	98	93.492	ENSKMAG00000014115	srl	95	93.492	Kryptolebias_marmoratus
ENSSMAG00000016274	srl	96	76.244	ENSLBEG00000013811	SRL	95	76.471	Labrus_bergylta
ENSSMAG00000016274	srl	100	94.692	ENSLBEG00000026643	srl	100	94.692	Labrus_bergylta
ENSSMAG00000016274	srl	100	81.573	ENSLACG00000002825	SRL	100	83.186	Latimeria_chalumnae
ENSSMAG00000016274	srl	98	89.087	ENSLOCG00000002644	srl	96	89.087	Lepisosteus_oculatus
ENSSMAG00000016274	srl	98	81.778	ENSLAFG00000006329	SRL	51	81.778	Loxodonta_africana
ENSSMAG00000016274	srl	94	82.791	ENSMFAG00000037383	SRL	99	82.791	Macaca_fascicularis
ENSSMAG00000016274	srl	97	82.579	ENSMNEG00000019236	-	93	82.579	Macaca_nemestrina
ENSSMAG00000016274	srl	97	75.566	ENSMLEG00000032156	SRL	93	75.566	Mandrillus_leucophaeus
ENSSMAG00000016274	srl	96	75.551	ENSMAMG00000013756	SRL	53	75.551	Mastacembelus_armatus
ENSSMAG00000016274	srl	97	96.847	ENSMAMG00000023322	srl	99	93.790	Mastacembelus_armatus
ENSSMAG00000016274	srl	100	95.966	ENSMZEG00005004548	srl	100	95.966	Maylandia_zebra
ENSSMAG00000016274	srl	98	73.753	ENSMZEG00005004010	SRL	58	73.856	Maylandia_zebra
ENSSMAG00000016274	srl	98	81.473	ENSMGAG00000009342	SRL	92	85.479	Meleagris_gallopavo
ENSSMAG00000016274	srl	98	81.778	ENSMICG00000032307	SRL	100	80.127	Microcebus_murinus
ENSSMAG00000016274	srl	99	81.441	ENSMOCG00000008208	Srl	100	80.127	Microtus_ochrogaster
ENSSMAG00000016274	srl	96	75.165	ENSMMOG00000021572	SRL	99	75.381	Mola_mola
ENSSMAG00000016274	srl	98	95.323	ENSMMOG00000013970	srl	99	95.749	Mola_mola
ENSSMAG00000016274	srl	98	83.036	ENSMODG00000016380	-	50	83.036	Monodelphis_domestica
ENSSMAG00000016274	srl	100	93.843	ENSMALG00000005039	srl	99	94.855	Monopterus_albus
ENSSMAG00000016274	srl	92	76.850	ENSMALG00000000670	SRL	98	76.850	Monopterus_albus
ENSSMAG00000016274	srl	98	83.556	MGP_CAROLIEiJ_G0020400	Srl	100	81.607	Mus_caroli
ENSSMAG00000016274	srl	98	83.556	ENSMUSG00000022519	Srl	100	81.607	Mus_musculus
ENSSMAG00000016274	srl	98	83.556	MGP_SPRETEiJ_G0021294	Srl	100	81.607	Mus_spretus
ENSSMAG00000016274	srl	98	81.778	ENSMPUG00000015025	SRL	55	81.778	Mustela_putorius_furo
ENSSMAG00000016274	srl	98	82.667	ENSMLUG00000030733	SRL	57	82.667	Myotis_lucifugus
ENSSMAG00000016274	srl	99	82.675	ENSNGAG00000019741	Srl	100	81.184	Nannospalax_galili
ENSSMAG00000016274	srl	98	73.753	ENSNBRG00000002422	SRL	56	75.463	Neolamprologus_brichardi
ENSSMAG00000016274	srl	100	95.754	ENSNBRG00000023775	srl	100	95.754	Neolamprologus_brichardi
ENSSMAG00000016274	srl	97	76.923	ENSNLEG00000029051	SRL	93	76.923	Nomascus_leucogenys
ENSSMAG00000016274	srl	98	76.444	ENSOPRG00000000477	-	53	76.444	Ochotona_princeps
ENSSMAG00000016274	srl	99	82.018	ENSODEG00000013256	SRL	97	81.659	Octodon_degus
ENSSMAG00000016274	srl	100	95.859	ENSONIG00000005192	srl	100	95.859	Oreochromis_niloticus
ENSSMAG00000016274	srl	98	81.778	ENSOCUG00000025140	SRL	50	81.778	Oryctolagus_cuniculus
ENSSMAG00000016274	srl	100	94.904	ENSORLG00000008291	srl	97	94.904	Oryzias_latipes
ENSSMAG00000016274	srl	99	74.286	ENSORLG00000015064	SRL	99	74.286	Oryzias_latipes
ENSSMAG00000016274	srl	99	74.286	ENSORLG00020018173	SRL	99	74.286	Oryzias_latipes_hni
ENSSMAG00000016274	srl	100	95.329	ENSORLG00020019784	srl	85	95.329	Oryzias_latipes_hni
ENSSMAG00000016274	srl	99	74.505	ENSORLG00015019063	SRL	99	74.505	Oryzias_latipes_hsok
ENSSMAG00000016274	srl	100	94.904	ENSORLG00015009342	srl	97	94.904	Oryzias_latipes_hsok
ENSSMAG00000016274	srl	98	73.913	ENSOMEG00000005682	SRL	53	74.617	Oryzias_melastigma
ENSSMAG00000016274	srl	100	94.692	ENSOMEG00000010006	srl	100	94.692	Oryzias_melastigma
ENSSMAG00000016274	srl	98	81.556	ENSOGAG00000029266	SRL	55	81.556	Otolemur_garnettii
ENSSMAG00000016274	srl	98	82.851	ENSOARG00000003074	SRL	56	82.851	Ovis_aries
ENSSMAG00000016274	srl	97	82.579	ENSPPAG00000024919	-	99	82.791	Pan_paniscus
ENSSMAG00000016274	srl	97	82.127	ENSPPRG00000010274	SRL	99	82.558	Panthera_pardus
ENSSMAG00000016274	srl	97	82.127	ENSPTIG00000015162	SRL	99	82.558	Panthera_tigris_altaica
ENSSMAG00000016274	srl	100	79.704	ENSPTRG00000007712	SRL	99	82.791	Pan_troglodytes
ENSSMAG00000016274	srl	97	82.579	ENSPANG00000013804	SRL	95	82.579	Papio_anubis
ENSSMAG00000016274	srl	100	90.084	ENSPKIG00000006405	srl	100	89.641	Paramormyrops_kingsleyae
ENSSMAG00000016274	srl	100	78.344	ENSPKIG00000024974	SRL	94	78.344	Paramormyrops_kingsleyae
ENSSMAG00000016274	srl	97	82.167	ENSPSIG00000008586	SRL	50	82.167	Pelodiscus_sinensis
ENSSMAG00000016274	srl	97	75.792	ENSPMGG00000023505	-	100	75.621	Periophthalmus_magnuspinnatus
ENSSMAG00000016274	srl	98	94.209	ENSPMGG00000021081	srl	97	94.209	Periophthalmus_magnuspinnatus
ENSSMAG00000016274	srl	98	82.667	ENSPEMG00000015842	Srl	100	80.761	Peromyscus_maniculatus_bairdii
ENSSMAG00000016274	srl	92	67.890	ENSPMAG00000004786	srl	99	68.650	Petromyzon_marinus
ENSSMAG00000016274	srl	98	82.589	ENSPCIG00000012128	SRL	98	82.589	Phascolarctos_cinereus
ENSSMAG00000016274	srl	100	93.789	ENSPFOG00000011408	srl	95	93.582	Poecilia_formosa
ENSSMAG00000016274	srl	99	92.779	ENSPLAG00000008017	srl	99	92.779	Poecilia_latipinna
ENSSMAG00000016274	srl	98	76.339	ENSPLAG00000002932	SRL	99	76.457	Poecilia_latipinna
ENSSMAG00000016274	srl	100	93.843	ENSPMEG00000006745	srl	99	92.779	Poecilia_mexicana
ENSSMAG00000016274	srl	98	74.837	ENSPMEG00000005890	SRL	60	74.510	Poecilia_mexicana
ENSSMAG00000016274	srl	98	77.060	ENSPREG00000000315	SRL	100	77.060	Poecilia_reticulata
ENSSMAG00000016274	srl	100	93.843	ENSPREG00000007751	srl	99	94.420	Poecilia_reticulata
ENSSMAG00000016274	srl	92	84.248	ENSPPYG00000007053	SRL	98	84.248	Pongo_abelii
ENSSMAG00000016274	srl	98	82.183	ENSPCAG00000003378	-	51	82.183	Procavia_capensis
ENSSMAG00000016274	srl	98	81.778	ENSPCOG00000023135	SRL	99	83.023	Propithecus_coquereli
ENSSMAG00000016274	srl	98	82.444	ENSPVAG00000006586	SRL	55	82.444	Pteropus_vampyrus
ENSSMAG00000016274	srl	98	73.753	ENSPNYG00000003423	SRL	57	73.856	Pundamilia_nyererei
ENSSMAG00000016274	srl	100	95.754	ENSPNYG00000001200	srl	100	95.754	Pundamilia_nyererei
ENSSMAG00000016274	srl	100	90.683	ENSPNAG00000023106	srl	100	90.269	Pygocentrus_nattereri
ENSSMAG00000016274	srl	96	75.964	ENSPNAG00000007361	-	91	75.964	Pygocentrus_nattereri
ENSSMAG00000016274	srl	99	82.276	ENSRNOG00000005269	Srl	51	82.276	Rattus_norvegicus
ENSSMAG00000016274	srl	99	80.568	ENSRBIG00000042358	SRL	51	80.568	Rhinopithecus_bieti
ENSSMAG00000016274	srl	97	82.579	ENSSBOG00000029273	SRL	93	82.579	Saimiri_boliviensis_boliviensis
ENSSMAG00000016274	srl	98	82.812	ENSSHAG00000011715	-	50	82.812	Sarcophilus_harrisii
ENSSMAG00000016274	srl	98	77.803	ENSSFOG00015021327	SRL	50	77.679	Scleropages_formosus
ENSSMAG00000016274	srl	100	89.876	ENSSFOG00015009773	srl	100	89.876	Scleropages_formosus
ENSSMAG00000016274	srl	98	95.740	ENSSDUG00000010808	srl	98	95.740	Seriola_dumerili
ENSSMAG00000016274	srl	97	77.556	ENSSDUG00000009161	SRL	99	77.556	Seriola_dumerili
ENSSMAG00000016274	srl	97	77.293	ENSSLDG00000014601	SRL	100	77.851	Seriola_lalandi_dorsalis
ENSSMAG00000016274	srl	100	94.904	ENSSLDG00000022024	srl	100	94.904	Seriola_lalandi_dorsalis
ENSSMAG00000016274	srl	97	82.472	ENSSPUG00000016859	SRL	98	82.472	Sphenodon_punctatus
ENSSMAG00000016274	srl	100	95.975	ENSSPAG00000019105	srl	100	95.127	Stegastes_partitus
ENSSMAG00000016274	srl	96	78.231	ENSSPAG00000014254	SRL	98	78.231	Stegastes_partitus
ENSSMAG00000016274	srl	98	82.183	ENSSSCG00000007949	SRL	99	82.143	Sus_scrofa
ENSSMAG00000016274	srl	96	82.273	ENSTGUG00000003951	-	97	82.273	Taeniopygia_guttata
ENSSMAG00000016274	srl	79	84.530	ENSTGUG00000016121	-	100	84.530	Taeniopygia_guttata
ENSSMAG00000016274	srl	92	78.282	ENSTRUG00000013310	SRL	55	78.095	Takifugu_rubripes
ENSSMAG00000016274	srl	100	95.117	ENSTRUG00000006005	srl	100	95.117	Takifugu_rubripes
ENSSMAG00000016274	srl	100	94.480	ENSTNIG00000009739	srl	100	94.480	Tetraodon_nigroviridis
ENSSMAG00000016274	srl	98	81.778	ENSUAMG00000005701	SRL	56	81.778	Ursus_americanus
ENSSMAG00000016274	srl	98	81.778	ENSUMAG00000002574	SRL	55	81.778	Ursus_maritimus
ENSSMAG00000016274	srl	98	81.292	ENSXETG00000017313	srl	99	81.292	Xenopus_tropicalis
ENSSMAG00000016274	srl	98	77.455	ENSXCOG00000014584	SRL	99	77.578	Xiphophorus_couchianus
ENSSMAG00000016274	srl	92	94.299	ENSXCOG00000010424	srl	97	94.299	Xiphophorus_couchianus
ENSSMAG00000016274	srl	99	74.681	ENSXMAG00000027598	SRL	64	74.681	Xiphophorus_maculatus
ENSSMAG00000016274	srl	100	93.631	ENSXMAG00000004625	srl	95	93.418	Xiphophorus_maculatus