EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSMAG00000016534 (Gene tree)
Gene ID: -
Gene Symbol: xrn1
Alias: wu:fk92c07|zgc:63635
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Minus strand
Length: 18392 bases
Position: chr7:17875741-17894132
Accession: ZDB-GENE-040426-1203
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000027437	XRN_N	PF03159.18	1.6e-95	1	1
ENSSMAP00000027417	XRN_N	PF03159.18	2.1e-95	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000027755	-	5055	-	ENSSMAP00000027417	1684 (aa)	-	-
ENSSMAT00000027775	-	4773	-	ENSSMAP00000027437	1590 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000016534's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000016534's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000016534	xrn1	98	72.132	ENSG00000114127	XRN1	96	96.117	Homo_sapiens
ENSSMAG00000016534	xrn1	94	89.233	ENSAPOG00000000622	xrn1	100	86.745	Acanthochromis_polyacanthus
ENSSMAG00000016534	xrn1	94	71.958	ENSAMEG00000012538	XRN1	91	72.039	Ailuropoda_melanoleuca
ENSSMAG00000016534	xrn1	94	87.643	ENSACIG00000001057	xrn1	98	87.643	Amphilophus_citrinellus
ENSSMAG00000016534	xrn1	100	86.600	ENSAOCG00000014097	xrn1	100	83.333	Amphiprion_ocellaris
ENSSMAG00000016534	xrn1	93	93.878	ENSAPEG00000006620	xrn1	99	84.314	Amphiprion_percula
ENSSMAG00000016534	xrn1	100	81.773	ENSATEG00000009752	xrn1	100	83.972	Anabas_testudineus
ENSSMAG00000016534	xrn1	95	71.803	ENSAPLG00000004905	XRN1	95	71.816	Anas_platyrhynchos
ENSSMAG00000016534	xrn1	100	68.864	ENSACAG00000004985	XRN1	96	70.163	Anolis_carolinensis
ENSSMAG00000016534	xrn1	95	72.456	ENSANAG00000029013	XRN1	99	74.230	Aotus_nancymaae
ENSSMAG00000016534	xrn1	99	85.870	ENSACLG00000004806	xrn1	99	82.201	Astatotilapia_calliptera
ENSSMAG00000016534	xrn1	99	74.345	ENSAMXG00000019370	xrn1	95	98.058	Astyanax_mexicanus
ENSSMAG00000016534	xrn1	99	71.809	ENSBTAG00000011524	XRN1	95	71.890	Bos_taurus
ENSSMAG00000016534	xrn1	75	38.256	WBGene00012730	xrn-1	84	37.219	Caenorhabditis_elegans
ENSSMAG00000016534	xrn1	98	72.375	ENSCJAG00000001872	XRN1	94	72.375	Callithrix_jacchus
ENSSMAG00000016534	xrn1	94	72.698	ENSCAFG00000007783	XRN1	93	72.654	Canis_familiaris
ENSSMAG00000016534	xrn1	94	72.698	ENSCAFG00020009120	XRN1	99	77.129	Canis_lupus_dingo
ENSSMAG00000016534	xrn1	98	71.809	ENSCHIG00000019192	XRN1	92	71.890	Capra_hircus
ENSSMAG00000016534	xrn1	98	71.971	ENSTSYG00000002705	XRN1	94	72.052	Carlito_syrichta
ENSSMAG00000016534	xrn1	59	62.871	ENSCAPG00000004604	-	99	63.036	Cavia_aperea
ENSSMAG00000016534	xrn1	100	65.279	ENSCCAG00000034800	XRN1	99	79.556	Cebus_capucinus
ENSSMAG00000016534	xrn1	95	72.456	ENSCATG00000041794	XRN1	94	72.456	Cercocebus_atys
ENSSMAG00000016534	xrn1	97	72.132	ENSCLAG00000001451	XRN1	99	79.556	Chinchilla_lanigera
ENSSMAG00000016534	xrn1	95	72.617	ENSCSAG00000011265	XRN1	94	72.617	Chlorocebus_sabaeus
ENSSMAG00000016534	xrn1	55	94.805	ENSCHOG00000013961	-	53	95.833	Choloepus_hoffmanni
ENSSMAG00000016534	xrn1	74	50.050	ENSCSAVG00000008584	-	93	49.950	Ciona_savignyi
ENSSMAG00000016534	xrn1	95	72.617	ENSCANG00000037495	XRN1	99	79.556	Colobus_angolensis_palliatus
ENSSMAG00000016534	xrn1	95	71.971	ENSCGRG00001019411	Xrn1	99	79.556	Cricetulus_griseus_chok1gshd
ENSSMAG00000016534	xrn1	95	71.971	ENSCGRG00000012464	Xrn1	99	79.556	Cricetulus_griseus_crigri
ENSSMAG00000016534	xrn1	100	78.287	ENSCSEG00000021285	xrn1	94	99.038	Cynoglossus_semilaevis
ENSSMAG00000016534	xrn1	71	82.155	ENSCVAG00000013089	xrn1	99	85.247	Cyprinodon_variegatus
ENSSMAG00000016534	xrn1	99	77.484	ENSDARG00000091652	xrn1	98	82.664	Danio_rerio
ENSSMAG00000016534	xrn1	99	70.713	ENSDORG00000013833	Xrn1	94	70.791	Dipodomys_ordii
ENSSMAG00000016534	xrn1	75	40.793	FBgn0020261	pcm	72	40.462	Drosophila_melanogaster
ENSSMAG00000016534	xrn1	81	70.270	ENSETEG00000003978	XRN1	82	69.421	Echinops_telfairi
ENSSMAG00000016534	xrn1	94	72.397	ENSEASG00005002687	XRN1	99	79.556	Equus_asinus_asinus
ENSSMAG00000016534	xrn1	94	72.316	ENSECAG00000008301	XRN1	93	72.316	Equus_caballus
ENSSMAG00000016534	xrn1	84	82.024	ENSEEUG00000011323	XRN1	84	82.024	Erinaceus_europaeus
ENSSMAG00000016534	xrn1	100	77.402	ENSELUG00000000169	xrn1	96	77.402	Esox_lucius
ENSSMAG00000016534	xrn1	94	67.232	ENSFCAG00000027589	XRN1	99	81.182	Felis_catus
ENSSMAG00000016534	xrn1	100	69.044	ENSFALG00000007021	XRN1	93	69.044	Ficedula_albicollis
ENSSMAG00000016534	xrn1	98	72.097	ENSFDAG00000020494	XRN1	99	79.873	Fukomys_damarensis
ENSSMAG00000016534	xrn1	89	75.944	ENSGMOG00000006396	xrn1	88	76.437	Gadus_morhua
ENSSMAG00000016534	xrn1	100	69.248	ENSGALG00000002706	XRN1	96	70.100	Gallus_gallus
ENSSMAG00000016534	xrn1	99	85.547	ENSGACG00000014328	xrn1	94	85.547	Gasterosteus_aculeatus
ENSSMAG00000016534	xrn1	96	71.888	ENSGAGG00000017535	XRN1	95	71.888	Gopherus_agassizii
ENSSMAG00000016534	xrn1	98	72.375	ENSGGOG00000008047	XRN1	94	72.375	Gorilla_gorilla
ENSSMAG00000016534	xrn1	100	82.246	ENSHBUG00000005908	xrn1	99	80.638	Haplochromis_burtoni
ENSSMAG00000016534	xrn1	98	72.375	ENSHGLG00000014476	XRN1	99	79.556	Heterocephalus_glaber_female
ENSSMAG00000016534	xrn1	98	72.375	ENSHGLG00100015130	XRN1	99	79.556	Heterocephalus_glaber_male
ENSSMAG00000016534	xrn1	94	83.483	ENSHCOG00000014062	xrn1	99	83.483	Hippocampus_comes
ENSSMAG00000016534	xrn1	100	69.195	ENSIPUG00000015229	xrn1	100	69.329	Ictalurus_punctatus
ENSSMAG00000016534	xrn1	97	71.158	ENSSTOG00000013552	XRN1	99	79.239	Ictidomys_tridecemlineatus
ENSSMAG00000016534	xrn1	97	71.865	ENSJJAG00000010863	Xrn1	99	78.878	Jaculus_jaculus
ENSSMAG00000016534	xrn1	100	80.259	ENSKMAG00000021356	xrn1	95	84.696	Kryptolebias_marmoratus
ENSSMAG00000016534	xrn1	99	85.101	ENSLBEG00000018656	xrn1	97	100.000	Labrus_bergylta
ENSSMAG00000016534	xrn1	97	72.311	ENSLACG00000009020	XRN1	91	72.311	Latimeria_chalumnae
ENSSMAG00000016534	xrn1	99	73.802	ENSLOCG00000007944	xrn1	97	73.866	Lepisosteus_oculatus
ENSSMAG00000016534	xrn1	66	73.938	ENSLAFG00000015426	XRN1	99	73.901	Loxodonta_africana
ENSSMAG00000016534	xrn1	95	72.617	ENSMFAG00000032599	XRN1	94	72.617	Macaca_fascicularis
ENSSMAG00000016534	xrn1	95	72.617	ENSMMUG00000014038	XRN1	94	72.617	Macaca_mulatta
ENSSMAG00000016534	xrn1	95	72.617	ENSMNEG00000034217	XRN1	94	72.617	Macaca_nemestrina
ENSSMAG00000016534	xrn1	99	85.191	ENSMAMG00000013219	xrn1	99	85.191	Mastacembelus_armatus
ENSSMAG00000016534	xrn1	99	85.870	ENSMZEG00005015099	xrn1	99	82.201	Maylandia_zebra
ENSSMAG00000016534	xrn1	95	69.943	ENSMGAG00000006333	XRN1	91	69.943	Meleagris_gallopavo
ENSSMAG00000016534	xrn1	95	72.375	ENSMICG00000048948	XRN1	96	96.117	Microcebus_murinus
ENSSMAG00000016534	xrn1	64	74.388	ENSMOCG00000008665	Xrn1	99	74.388	Microtus_ochrogaster
ENSSMAG00000016534	xrn1	94	73.623	ENSMODG00000021236	XRN1	95	69.545	Monodelphis_domestica
ENSSMAG00000016534	xrn1	99	81.839	ENSMALG00000004098	xrn1	100	77.030	Monopterus_albus
ENSSMAG00000016534	xrn1	95	79.715	MGP_CAROLIEiJ_G0032535	Xrn1	100	95.000	Mus_caroli
ENSSMAG00000016534	xrn1	100	67.654	ENSMUSG00000032410	Xrn1	100	95.000	Mus_musculus
ENSSMAG00000016534	xrn1	99	72.191	MGP_PahariEiJ_G0015404	Xrn1	100	95.000	Mus_pahari
ENSSMAG00000016534	xrn1	99	72.132	MGP_SPRETEiJ_G0033678	Xrn1	100	95.000	Mus_spretus
ENSSMAG00000016534	xrn1	94	72.536	ENSMPUG00000012040	XRN1	93	72.720	Mustela_putorius_furo
ENSSMAG00000016534	xrn1	100	66.787	ENSMLUG00000016885	XRN1	98	66.787	Myotis_lucifugus
ENSSMAG00000016534	xrn1	61	74.326	ENSNGAG00000023964	Xrn1	99	75.594	Nannospalax_galili
ENSSMAG00000016534	xrn1	97	69.525	ENSNLEG00000004726	XRN1	96	69.525	Nomascus_leucogenys
ENSSMAG00000016534	xrn1	68	96.907	ENSMEUG00000014473	-	66	97.087	Notamacropus_eugenii
ENSSMAG00000016534	xrn1	67	67.937	ENSOPRG00000007337	-	63	69.048	Ochotona_princeps
ENSSMAG00000016534	xrn1	99	85.569	ENSONIG00000016673	xrn1	99	83.816	Oreochromis_niloticus
ENSSMAG00000016534	xrn1	92	65.693	ENSOANG00000006735	XRN1	97	64.996	Ornithorhynchus_anatinus
ENSSMAG00000016534	xrn1	97	72.859	ENSOCUG00000001861	XRN1	91	72.940	Oryctolagus_cuniculus
ENSSMAG00000016534	xrn1	100	79.029	ENSORLG00000013005	xrn1	98	78.856	Oryzias_latipes
ENSSMAG00000016534	xrn1	100	78.798	ENSORLG00020005559	xrn1	100	78.625	Oryzias_latipes_hni
ENSSMAG00000016534	xrn1	100	78.625	ENSORLG00015022523	xrn1	100	78.452	Oryzias_latipes_hsok
ENSSMAG00000016534	xrn1	100	79.225	ENSOMEG00000015397	xrn1	99	86.814	Oryzias_melastigma
ENSSMAG00000016534	xrn1	99	64.826	ENSOGAG00000000170	XRN1	100	64.826	Otolemur_garnettii
ENSSMAG00000016534	xrn1	98	71.855	ENSOARG00000006343	XRN1	94	71.935	Ovis_aries
ENSSMAG00000016534	xrn1	98	72.375	ENSPPAG00000010180	XRN1	94	72.375	Pan_paniscus
ENSSMAG00000016534	xrn1	94	72.603	ENSPPRG00000007125	XRN1	93	72.559	Panthera_pardus
ENSSMAG00000016534	xrn1	94	72.559	ENSPTIG00000021081	XRN1	93	72.639	Panthera_tigris_altaica
ENSSMAG00000016534	xrn1	98	72.375	ENSPTRG00000015482	XRN1	94	72.375	Pan_troglodytes
ENSSMAG00000016534	xrn1	98	72.617	ENSPANG00000010638	XRN1	94	72.617	Papio_anubis
ENSSMAG00000016534	xrn1	98	69.838	ENSPSIG00000018050	XRN1	100	65.767	Pelodiscus_sinensis
ENSSMAG00000016534	xrn1	61	84.738	ENSPMGG00000002648	xrn1	99	86.010	Periophthalmus_magnuspinnatus
ENSSMAG00000016534	xrn1	61	79.715	ENSPEMG00000020610	Xrn1	99	79.715	Peromyscus_maniculatus_bairdii
ENSSMAG00000016534	xrn1	69	51.213	ENSPMAG00000002975	xrn1	99	51.213	Petromyzon_marinus
ENSSMAG00000016534	xrn1	97	73.539	ENSPCIG00000028735	XRN1	99	78.889	Phascolarctos_cinereus
ENSSMAG00000016534	xrn1	92	83.077	ENSPFOG00000013932	xrn1	99	81.527	Poecilia_formosa
ENSSMAG00000016534	xrn1	92	81.479	ENSPLAG00000021653	xrn1	99	81.608	Poecilia_latipinna
ENSSMAG00000016534	xrn1	90	81.650	ENSPMEG00000003076	xrn1	95	81.097	Poecilia_mexicana
ENSSMAG00000016534	xrn1	100	80.729	ENSPREG00000021147	xrn1	100	78.905	Poecilia_reticulata
ENSSMAG00000016534	xrn1	100	60.870	ENSPPYG00000014172	XRN1	100	60.745	Pongo_abelii
ENSSMAG00000016534	xrn1	82	80.328	ENSPCAG00000005638	XRN1	88	80.328	Procavia_capensis
ENSSMAG00000016534	xrn1	94	72.097	ENSPCOG00000013089	XRN1	99	79.239	Propithecus_coquereli
ENSSMAG00000016534	xrn1	91	70.553	ENSPVAG00000016265	XRN1	91	70.553	Pteropus_vampyrus
ENSSMAG00000016534	xrn1	100	83.675	ENSPNYG00000010570	xrn1	99	82.183	Pundamilia_nyererei
ENSSMAG00000016534	xrn1	100	68.649	ENSPNAG00000023531	xrn1	100	68.609	Pygocentrus_nattereri
ENSSMAG00000016534	xrn1	98	71.913	ENSRNOG00000042951	Xrn1	95	70.787	Rattus_norvegicus
ENSSMAG00000016534	xrn1	95	72.456	ENSRBIG00000041227	XRN1	94	72.456	Rhinopithecus_bieti
ENSSMAG00000016534	xrn1	73	52.717	YGL173C	XRN1	74	52.717	Saccharomyces_cerevisiae
ENSSMAG00000016534	xrn1	95	72.536	ENSSBOG00000029561	XRN1	94	72.536	Saimiri_boliviensis_boliviensis
ENSSMAG00000016534	xrn1	98	68.196	ENSSHAG00000016207	XRN1	97	68.140	Sarcophilus_harrisii
ENSSMAG00000016534	xrn1	100	74.865	ENSSFOG00015024211	xrn1	100	66.570	Scleropages_formosus
ENSSMAG00000016534	xrn1	89	90.367	ENSSDUG00000010306	xrn1	97	90.367	Seriola_dumerili
ENSSMAG00000016534	xrn1	100	86.078	ENSSLDG00000021543	xrn1	100	89.428	Seriola_lalandi_dorsalis
ENSSMAG00000016534	xrn1	65	68.074	ENSSARG00000007741	-	75	68.074	Sorex_araneus
ENSSMAG00000016534	xrn1	97	72.146	ENSTGUG00000008498	XRN1	94	70.830	Taeniopygia_guttata
ENSSMAG00000016534	xrn1	100	79.454	ENSTRUG00000004895	xrn1	96	84.648	Takifugu_rubripes
ENSSMAG00000016534	xrn1	99	78.760	ENSTNIG00000017615	xrn1	100	70.652	Tetraodon_nigroviridis
ENSSMAG00000016534	xrn1	79	85.484	ENSTBEG00000003256	XRN1	87	72.843	Tupaia_belangeri
ENSSMAG00000016534	xrn1	96	69.709	ENSTTRG00000012914	XRN1	93	69.790	Tursiops_truncatus
ENSSMAG00000016534	xrn1	94	70.355	ENSUAMG00000001608	XRN1	99	75.753	Ursus_americanus
ENSSMAG00000016534	xrn1	94	72.132	ENSUMAG00000013625	XRN1	93	72.213	Ursus_maritimus
ENSSMAG00000016534	xrn1	100	66.897	ENSVPAG00000004690	XRN1	95	66.973	Vicugna_pacos
ENSSMAG00000016534	xrn1	93	72.617	ENSVVUG00000024461	XRN1	99	79.556	Vulpes_vulpes
ENSSMAG00000016534	xrn1	100	59.356	ENSXETG00000000619	xrn1	99	85.564	Xenopus_tropicalis
ENSSMAG00000016534	xrn1	96	85.094	ENSXCOG00000007917	xrn1	96	85.258	Xiphophorus_couchianus
ENSSMAG00000016534	xrn1	100	76.618	ENSXMAG00000018320	xrn1	98	84.930	Xiphophorus_maculatus