EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSMAG00000017518 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: Blimp-1|Blimp1|U boot|narrowminded|nrd|prdm1|u-boot|ubo|wu:fb99c12|zgc:91885
Full Name: -
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Minus strand
Length: 9191 bases
Position: chr20:13449459-13458649
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000028605	zf-C2H2	PF00096.26	1.2e-14	1	3
ENSSMAP00000028605	zf-C2H2	PF00096.26	1.2e-14	2	3
ENSSMAP00000028605	zf-C2H2	PF00096.26	1.2e-14	3	3
ENSSMAP00000028605	zf-met	PF12874.7	0.00031	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000028958	-	3665	-	ENSSMAP00000028605	787 (aa)	-	A0A2U9CW58

Gene Model

Click here to download ENSSMAG00000017518's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000017518's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSMAG00000017518	-	54	54.217	ENSSMAG00000020467	prdm1b	91	38.798

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000017518	-	100	74.304	ENSAPOG00000014135	-	100	74.304	Acanthochromis_polyacanthus
ENSSMAG00000017518	-	100	72.785	ENSACIG00000009747	-	100	72.785	Amphilophus_citrinellus
ENSSMAG00000017518	-	53	55.828	ENSAPEG00000019826	prdm1b	56	64.286	Amphiprion_percula
ENSSMAG00000017518	-	72	53.279	ENSATEG00000021017	prdm1a	79	52.823	Anabas_testudineus
ENSSMAG00000017518	-	98	76.326	ENSATEG00000014034	-	99	76.326	Anabas_testudineus
ENSSMAG00000017518	-	78	37.077	ENSATEG00000006924	prdm1b	92	36.858	Anabas_testudineus
ENSSMAG00000017518	-	76	51.667	ENSCSEG00000009707	prdm1a	81	51.667	Cynoglossus_semilaevis
ENSSMAG00000017518	-	57	53.818	ENSCVAG00000016746	prdm1b	92	34.651	Cyprinodon_variegatus
ENSSMAG00000017518	-	80	52.575	ENSCVAG00000019081	prdm1a	99	44.099	Cyprinodon_variegatus
ENSSMAG00000017518	-	90	39.369	ENSGAFG00000016191	prdm1b	91	39.369	Gambusia_affinis
ENSSMAG00000017518	-	99	65.019	ENSGAFG00000013012	-	99	65.110	Gambusia_affinis
ENSSMAG00000017518	-	58	51.636	ENSGACG00000002716	prdm1b	64	51.636	Gasterosteus_aculeatus
ENSSMAG00000017518	-	60	57.727	ENSKMAG00000011218	prdm1b	78	57.727	Kryptolebias_marmoratus
ENSSMAG00000017518	-	65	55.676	ENSKMAG00000017597	prdm1a	95	44.248	Kryptolebias_marmoratus
ENSSMAG00000017518	-	99	67.681	ENSKMAG00000016247	-	99	67.681	Kryptolebias_marmoratus
ENSSMAG00000017518	-	54	56.364	ENSLBEG00000020955	prdm1b	55	64.384	Labrus_bergylta
ENSSMAG00000017518	-	63	55.319	ENSLOCG00000004978	prdm1b	65	55.319	Lepisosteus_oculatus
ENSSMAG00000017518	-	98	76.265	ENSMALG00000000462	-	99	76.265	Monopterus_albus
ENSSMAG00000017518	-	51	58.282	ENSONIG00000013583	prdm1b	57	58.282	Oreochromis_niloticus
ENSSMAG00000017518	-	100	71.356	ENSONIG00000014709	-	100	71.356	Oreochromis_niloticus
ENSSMAG00000017518	-	56	52.083	ENSPFOG00000003103	prdm1b	69	52.083	Poecilia_formosa
ENSSMAG00000017518	-	78	38.028	ENSPMEG00000007869	prdm1b	91	38.028	Poecilia_mexicana
ENSSMAG00000017518	-	55	53.216	ENSPREG00000011327	prdm1b	54	63.514	Poecilia_reticulata
ENSSMAG00000017518	-	99	44.034	ENSPNAG00000028442	prdm1a	96	44.034	Pygocentrus_nattereri
ENSSMAG00000017518	-	57	52.708	ENSSFOG00015021896	prdm1b	65	52.708	Scleropages_formosus
ENSSMAG00000017518	-	100	82.427	ENSSDUG00000000524	-	100	82.427	Seriola_dumerili
ENSSMAG00000017518	-	78	38.066	ENSSDUG00000020610	prdm1b	91	38.066	Seriola_dumerili
ENSSMAG00000017518	-	90	39.101	ENSSLDG00000021973	prdm1b	92	38.462	Seriola_lalandi_dorsalis
ENSSMAG00000017518	-	100	82.174	ENSSLDG00000001957	-	100	82.174	Seriola_lalandi_dorsalis
ENSSMAG00000017518	-	61	54.212	ENSSPAG00000000803	prdm1b	83	57.200	Stegastes_partitus
ENSSMAG00000017518	-	100	75.126	ENSSPAG00000009830	-	100	75.126	Stegastes_partitus
ENSSMAG00000017518	-	90	39.945	ENSXCOG00000018920	prdm1b	94	39.945	Xiphophorus_couchianus
ENSSMAG00000017518	-	55	52.907	ENSXMAG00000016765	prdm1b	55	64.706	Xiphophorus_maculatus