EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSMAG00000019052 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Minus strand
Length: 182913 bases
Position: chr18:2729483-2912395
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000031079	Fox-1_C	PF12414.8	1.8e-43	1	1
ENSSMAP00000031064	Fox-1_C	PF12414.8	2e-43	1	1
ENSSMAP00000031119	Fox-1_C	PF12414.8	2.7e-43	1	1
ENSSMAP00000031137	Fox-1_C	PF12414.8	3.7e-15	1	1
ENSSMAP00000031064	RRM_1	PF00076.22	1.2e-18	1	1
ENSSMAP00000031119	RRM_1	PF00076.22	1.6e-18	1	1
ENSSMAP00000031137	RRM_1	PF00076.22	2.7e-08	1	1
ENSSMAP00000031079	RRM_1	PF00076.22	0.00012	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000031500	-	1626	-	ENSSMAP00000031119	366 (aa)	-	-
ENSSMAT00000031445	-	1164	-	ENSSMAP00000031064	313 (aa)	-	-
ENSSMAT00000031460	-	1821	-	ENSSMAP00000031079	299 (aa)	-	-
ENSSMAT00000031518	-	1068	-	ENSSMAP00000031137	355 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000019052's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000019052's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSMAG00000019052	-	100	78.248	ENSSMAG00000012618	rbfox3b	88	71.429
ENSSMAG00000019052	-	71	72.174	ENSSMAG00000013090	rbfox1l	62	71.739
ENSSMAG00000019052	-	70	67.901	ENSSMAG00000013662	rbfox2	75	53.151
ENSSMAG00000019052	-	100	67.278	ENSSMAG00000015505	rbfox1	95	66.377
ENSSMAG00000019052	-	70	65.200	ENSSMAG00000004317	-	86	51.630

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000019052	-	95	79.801	ENSG00000167281	RBFOX3	100	80.442	Homo_sapiens
ENSSMAG00000019052	-	100	83.121	ENSAPOG00000021630	rbfox3b	100	82.016	Acanthochromis_polyacanthus
ENSSMAG00000019052	-	100	74.728	ENSAPOG00000015658	-	91	74.728	Acanthochromis_polyacanthus
ENSSMAG00000019052	-	95	75.549	ENSAMEG00000014170	RBFOX3	87	76.301	Ailuropoda_melanoleuca
ENSSMAG00000019052	-	95	75.796	ENSACIG00000003768	-	90	76.000	Amphilophus_citrinellus
ENSSMAG00000019052	-	100	78.662	ENSACIG00000010817	rbfox3b	99	79.299	Amphilophus_citrinellus
ENSSMAG00000019052	-	100	83.121	ENSAOCG00000012358	rbfox3b	100	82.016	Amphiprion_ocellaris
ENSSMAG00000019052	-	100	86.921	ENSAOCG00000010786	-	97	86.921	Amphiprion_ocellaris
ENSSMAG00000019052	-	100	73.885	ENSAPEG00000019081	rbfox3b	99	73.297	Amphiprion_percula
ENSSMAG00000019052	-	95	79.375	ENSAPEG00000015891	-	89	79.109	Amphiprion_percula
ENSSMAG00000019052	-	95	84.615	ENSATEG00000023101	-	96	85.032	Anabas_testudineus
ENSSMAG00000019052	-	100	74.419	ENSATEG00000019945	rbfox3b	99	75.000	Anabas_testudineus
ENSSMAG00000019052	-	100	80.063	ENSACAG00000016093	RBFOX3	100	80.387	Anolis_carolinensis
ENSSMAG00000019052	-	95	77.592	ENSANAG00000023457	RBFOX3	100	78.344	Aotus_nancymaae
ENSSMAG00000019052	-	100	87.738	ENSACLG00000025552	-	100	87.738	Astatotilapia_calliptera
ENSSMAG00000019052	-	100	83.387	ENSACLG00000020011	rbfox3b	100	83.387	Astatotilapia_calliptera
ENSSMAG00000019052	-	100	78.730	ENSAMXG00000042841	rbfox3b	100	77.528	Astyanax_mexicanus
ENSSMAG00000019052	-	100	82.527	ENSAMXG00000037246	rbfox3a	100	82.796	Astyanax_mexicanus
ENSSMAG00000019052	-	81	80.000	ENSBTAG00000006280	RBFOX3	100	67.771	Bos_taurus
ENSSMAG00000019052	-	95	68.227	ENSCJAG00000009563	RBFOX3	100	68.508	Callithrix_jacchus
ENSSMAG00000019052	-	77	88.333	ENSCAFG00000005547	RBFOX3	85	88.333	Canis_familiaris
ENSSMAG00000019052	-	95	68.300	ENSCAFG00020008126	RBFOX3	96	69.972	Canis_lupus_dingo
ENSSMAG00000019052	-	95	68.103	ENSCHIG00000009124	RBFOX3	96	69.972	Capra_hircus
ENSSMAG00000019052	-	95	68.300	ENSTSYG00000029617	RBFOX3	100	69.890	Carlito_syrichta
ENSSMAG00000019052	-	95	66.571	ENSCPOG00000021703	RBFOX3	100	67.213	Cavia_porcellus
ENSSMAG00000019052	-	95	77.592	ENSCCAG00000028450	RBFOX3	100	78.344	Cebus_capucinus
ENSSMAG00000019052	-	95	79.470	ENSCATG00000018349	RBFOX3	100	80.126	Cercocebus_atys
ENSSMAG00000019052	-	95	67.241	ENSCLAG00000006449	RBFOX3	100	68.871	Chinchilla_lanigera
ENSSMAG00000019052	-	95	79.470	ENSCSAG00000002355	RBFOX3	100	80.126	Chlorocebus_sabaeus
ENSSMAG00000019052	-	95	81.000	ENSCPBG00000010904	RBFOX3	100	81.270	Chrysemys_picta_bellii
ENSSMAG00000019052	-	95	79.470	ENSCANG00000043120	RBFOX3	100	80.126	Colobus_angolensis_palliatus
ENSSMAG00000019052	-	95	64.470	ENSCGRG00001019476	Rbfox3	100	68.132	Cricetulus_griseus_chok1gshd
ENSSMAG00000019052	-	95	64.470	ENSCGRG00000003268	Rbfox3	100	68.132	Cricetulus_griseus_crigri
ENSSMAG00000019052	-	100	89.918	ENSCSEG00000015567	RBFOX3	97	89.918	Cynoglossus_semilaevis
ENSSMAG00000019052	-	100	69.085	ENSCSEG00000020606	RBFOX3	98	68.785	Cynoglossus_semilaevis
ENSSMAG00000019052	-	100	83.121	ENSCVAG00000006882	rbfox3b	98	76.944	Cyprinodon_variegatus
ENSSMAG00000019052	-	100	83.019	ENSDARG00000010083	rbfox3a	100	83.288	Danio_rerio
ENSSMAG00000019052	-	100	72.063	ENSDARG00000074310	rbfox3b	93	89.362	Danio_rerio
ENSSMAG00000019052	-	77	70.447	ENSDNOG00000039391	RBFOX3	80	85.246	Dasypus_novemcinctus
ENSSMAG00000019052	-	95	60.983	ENSDORG00000005352	Rbfox3	100	60.556	Dipodomys_ordii
ENSSMAG00000019052	-	100	66.258	ENSEBUG00000002129	RBFOX3	95	66.864	Eptatretus_burgeri
ENSSMAG00000019052	-	85	58.029	ENSEBUG00000013559	RBFOX3	81	57.093	Eptatretus_burgeri
ENSSMAG00000019052	-	95	77.815	ENSEASG00005005059	RBFOX3	100	80.126	Equus_asinus_asinus
ENSSMAG00000019052	-	95	77.483	ENSECAG00000023811	RBFOX3	100	79.811	Equus_caballus
ENSSMAG00000019052	-	84	74.648	ENSEEUG00000013974	RBFOX3	72	81.967	Erinaceus_europaeus
ENSSMAG00000019052	-	100	84.395	ENSELUG00000017963	rbfox3b	100	83.039	Esox_lucius
ENSSMAG00000019052	-	61	63.684	ENSELUG00000009807	-	50	63.684	Esox_lucius
ENSSMAG00000019052	-	98	77.686	ENSFCAG00000002555	RBFOX3	100	77.961	Felis_catus
ENSSMAG00000019052	-	95	65.766	ENSFALG00000012288	RBFOX3	88	66.667	Ficedula_albicollis
ENSSMAG00000019052	-	95	61.823	ENSFDAG00000007489	RBFOX3	100	63.661	Fukomys_damarensis
ENSSMAG00000019052	-	94	80.919	ENSFHEG00000008550	rbfox3b	100	81.625	Fundulus_heteroclitus
ENSSMAG00000019052	-	100	64.266	ENSGMOG00000019304	-	96	64.543	Gadus_morhua
ENSSMAG00000019052	-	98	81.994	ENSGALG00000032889	RBFOX3	100	82.271	Gallus_gallus
ENSSMAG00000019052	-	97	81.046	ENSGAFG00000005025	rbfox3b	99	76.567	Gambusia_affinis
ENSSMAG00000019052	-	95	73.352	ENSGACG00000002138	-	96	75.275	Gasterosteus_aculeatus
ENSSMAG00000019052	-	98	81.111	ENSGAGG00000020025	RBFOX3	100	81.270	Gopherus_agassizii
ENSSMAG00000019052	-	95	79.801	ENSGGOG00000012546	RBFOX3	100	80.442	Gorilla_gorilla
ENSSMAG00000019052	-	100	87.261	ENSHBUG00000023098	-	96	86.787	Haplochromis_burtoni
ENSSMAG00000019052	-	100	83.387	ENSHBUG00000018099	rbfox3b	96	82.240	Haplochromis_burtoni
ENSSMAG00000019052	-	95	66.856	ENSHGLG00000008679	RBFOX3	100	68.207	Heterocephalus_glaber_female
ENSSMAG00000019052	-	95	63.173	ENSHGLG00100014739	RBFOX3	96	64.674	Heterocephalus_glaber_male
ENSSMAG00000019052	-	100	76.677	ENSHCOG00000001863	RBFOX3	92	76.677	Hippocampus_comes
ENSSMAG00000019052	-	96	75.748	ENSHCOG00000007444	RBFOX3	79	75.161	Hippocampus_comes
ENSSMAG00000019052	-	100	81.402	ENSIPUG00000012010	rbfox3a	100	81.671	Ictalurus_punctatus
ENSSMAG00000019052	-	100	65.130	ENSIPUG00000021966	rbfox3b	98	76.046	Ictalurus_punctatus
ENSSMAG00000019052	-	95	63.072	ENSSTOG00000026817	RBFOX3	100	63.551	Ictidomys_tridecemlineatus
ENSSMAG00000019052	-	95	67.049	ENSJJAG00000014167	Rbfox3	100	69.780	Jaculus_jaculus
ENSSMAG00000019052	-	100	83.121	ENSKMAG00000006726	rbfox3b	100	81.744	Kryptolebias_marmoratus
ENSSMAG00000019052	-	100	82.803	ENSLBEG00000004030	rbfox3b	100	82.289	Labrus_bergylta
ENSSMAG00000019052	-	100	91.826	ENSLBEG00000022508	-	100	91.826	Labrus_bergylta
ENSSMAG00000019052	-	95	69.817	ENSLACG00000018409	-	90	70.704	Latimeria_chalumnae
ENSSMAG00000019052	-	95	86.333	ENSLOCG00000012267	rbfox3a	98	86.196	Lepisosteus_oculatus
ENSSMAG00000019052	-	95	73.030	ENSLAFG00000016623	RBFOX3	96	70.248	Loxodonta_africana
ENSSMAG00000019052	-	95	68.012	ENSMFAG00000002247	RBFOX3	100	69.890	Macaca_fascicularis
ENSSMAG00000019052	-	95	79.470	ENSMMUG00000023028	RBFOX3	100	80.126	Macaca_mulatta
ENSSMAG00000019052	-	95	79.139	ENSMNEG00000041147	RBFOX3	100	79.811	Macaca_nemestrina
ENSSMAG00000019052	-	95	79.470	ENSMLEG00000025686	RBFOX3	100	80.126	Mandrillus_leucophaeus
ENSSMAG00000019052	-	100	76.358	ENSMAMG00000019810	rbfox3b	99	76.358	Mastacembelus_armatus
ENSSMAG00000019052	-	95	85.570	ENSMAMG00000020600	-	93	86.154	Mastacembelus_armatus
ENSSMAG00000019052	-	92	66.877	ENSMZEG00005003055	-	81	67.560	Maylandia_zebra
ENSSMAG00000019052	-	100	83.387	ENSMZEG00005000781	rbfox3b	100	82.240	Maylandia_zebra
ENSSMAG00000019052	-	61	80.000	ENSMGAG00000005600	RBFOX3	83	78.829	Meleagris_gallopavo
ENSSMAG00000019052	-	95	66.189	ENSMAUG00000013543	Rbfox3	100	67.857	Mesocricetus_auratus
ENSSMAG00000019052	-	100	78.864	ENSMICG00000014898	RBFOX3	100	79.180	Microcebus_murinus
ENSSMAG00000019052	-	95	67.622	ENSMOCG00000015373	Rbfox3	100	68.956	Microtus_ochrogaster
ENSSMAG00000019052	-	100	81.962	ENSMMOG00000020193	rbfox3b	100	74.799	Mola_mola
ENSSMAG00000019052	-	98	78.947	ENSMODG00000002089	RBFOX3	100	79.224	Monodelphis_domestica
ENSSMAG00000019052	-	100	82.484	ENSMALG00000020407	rbfox3b	100	81.199	Monopterus_albus
ENSSMAG00000019052	-	100	91.083	ENSMALG00000018270	-	100	90.736	Monopterus_albus
ENSSMAG00000019052	-	95	78.405	MGP_CAROLIEiJ_G0017487	Rbfox3	96	90.647	Mus_caroli
ENSSMAG00000019052	-	95	77.741	ENSMUSG00000025576	Rbfox3	96	90.647	Mus_musculus
ENSSMAG00000019052	-	95	76.159	MGP_PahariEiJ_G0018614	Rbfox3	96	91.367	Mus_pahari
ENSSMAG00000019052	-	95	78.405	MGP_SPRETEiJ_G0018331	Rbfox3	96	90.647	Mus_spretus
ENSSMAG00000019052	-	95	71.598	ENSMPUG00000012319	RBFOX3	95	72.283	Mustela_putorius_furo
ENSSMAG00000019052	-	95	67.908	ENSNGAG00000018006	Rbfox3	100	69.505	Nannospalax_galili
ENSSMAG00000019052	-	100	79.872	ENSNBRG00000022885	-	91	79.819	Neolamprologus_brichardi
ENSSMAG00000019052	-	100	82.109	ENSNBRG00000010102	rbfox3b	98	76.045	Neolamprologus_brichardi
ENSSMAG00000019052	-	100	50.000	ENSNLEG00000000153	-	95	53.312	Nomascus_leucogenys
ENSSMAG00000019052	-	86	79.167	ENSMEUG00000004218	-	100	51.667	Notamacropus_eugenii
ENSSMAG00000019052	-	72	70.482	ENSOPRG00000016279	-	71	78.689	Ochotona_princeps
ENSSMAG00000019052	-	95	78.738	ENSODEG00000009433	RBFOX3	100	79.114	Octodon_degus
ENSSMAG00000019052	-	100	82.803	ENSONIG00000009549	rbfox3b	98	77.222	Oreochromis_niloticus
ENSSMAG00000019052	-	100	87.261	ENSONIG00000007282	-	95	87.077	Oreochromis_niloticus
ENSSMAG00000019052	-	100	83.758	ENSORLG00000000905	rbfox3b	79	82.289	Oryzias_latipes
ENSSMAG00000019052	-	100	83.758	ENSORLG00020018030	rbfox3b	100	82.000	Oryzias_latipes_hni
ENSSMAG00000019052	-	100	83.758	ENSORLG00015009200	rbfox3b	100	82.000	Oryzias_latipes_hsok
ENSSMAG00000019052	-	80	76.452	ENSOMEG00000014677	rbfox3b	86	76.453	Oryzias_melastigma
ENSSMAG00000019052	-	95	78.073	ENSOGAG00000029595	RBFOX3	88	77.246	Otolemur_garnettii
ENSSMAG00000019052	-	97	52.113	ENSOARG00000002908	RBFOX3	89	59.104	Ovis_aries
ENSSMAG00000019052	-	81	79.688	ENSPPAG00000025383	RBFOX3	99	79.655	Pan_paniscus
ENSSMAG00000019052	-	95	68.035	ENSPPRG00000007819	RBFOX3	100	70.787	Panthera_pardus
ENSSMAG00000019052	-	95	79.801	ENSPTRG00000009727	RBFOX3	100	80.442	Pan_troglodytes
ENSSMAG00000019052	-	95	79.470	ENSPANG00000019837	RBFOX3	100	80.126	Papio_anubis
ENSSMAG00000019052	-	98	82.712	ENSPKIG00000010299	rbfox3a	96	77.410	Paramormyrops_kingsleyae
ENSSMAG00000019052	-	100	67.516	ENSPKIG00000022633	-	96	65.922	Paramormyrops_kingsleyae
ENSSMAG00000019052	-	85	81.132	ENSPMGG00000008000	rbfox3b	100	78.769	Periophthalmus_magnuspinnatus
ENSSMAG00000019052	-	95	67.908	ENSPEMG00000010500	Rbfox3	100	69.231	Peromyscus_maniculatus_bairdii
ENSSMAG00000019052	-	56	73.684	ENSPMAG00000008689	rbfox3b	93	76.316	Petromyzon_marinus
ENSSMAG00000019052	-	82	88.889	ENSPCIG00000005766	RBFOX3	100	77.817	Phascolarctos_cinereus
ENSSMAG00000019052	-	100	83.121	ENSPFOG00000018294	rbfox3b	94	76.944	Poecilia_formosa
ENSSMAG00000019052	-	81	81.176	ENSPLAG00000000481	rbfox3b	78	81.176	Poecilia_latipinna
ENSSMAG00000019052	-	94	81.272	ENSPMEG00000022997	rbfox3b	100	81.272	Poecilia_mexicana
ENSSMAG00000019052	-	100	83.175	ENSPREG00000012886	rbfox3b	99	82.065	Poecilia_reticulata
ENSSMAG00000019052	-	81	72.656	ENSPPYG00000008704	RBFOX3	88	72.848	Pongo_abelii
ENSSMAG00000019052	-	95	66.763	ENSPCAG00000001401	RBFOX3	100	69.252	Procavia_capensis
ENSSMAG00000019052	-	100	67.956	ENSPCOG00000012689	RBFOX3	100	69.061	Propithecus_coquereli
ENSSMAG00000019052	-	95	57.925	ENSPVAG00000015243	RBFOX3	100	62.431	Pteropus_vampyrus
ENSSMAG00000019052	-	100	71.858	ENSPNYG00000010414	rbfox3b	99	71.858	Pundamilia_nyererei
ENSSMAG00000019052	-	100	82.787	ENSPNYG00000009079	-	96	82.787	Pundamilia_nyererei
ENSSMAG00000019052	-	94	70.922	ENSPNAG00000018173	rbfox3b	90	70.922	Pygocentrus_nattereri
ENSSMAG00000019052	-	100	82.796	ENSPNAG00000002889	rbfox3a	100	83.065	Pygocentrus_nattereri
ENSSMAG00000019052	-	95	76.159	ENSRNOG00000003386	Rbfox3	100	79.560	Rattus_norvegicus
ENSSMAG00000019052	-	98	79.063	ENSRBIG00000040449	RBFOX3	100	79.339	Rhinopithecus_bieti
ENSSMAG00000019052	-	95	79.470	ENSRROG00000000766	RBFOX3	100	80.126	Rhinopithecus_roxellana
ENSSMAG00000019052	-	95	77.592	ENSSBOG00000031591	RBFOX3	100	78.344	Saimiri_boliviensis_boliviensis
ENSSMAG00000019052	-	95	71.386	ENSSHAG00000016076	RBFOX3	100	77.817	Sarcophilus_harrisii
ENSSMAG00000019052	-	99	69.000	ENSSFOG00015004716	RBFOX3	100	70.000	Scleropages_formosus
ENSSMAG00000019052	-	100	84.385	ENSSFOG00015023260	rbfox3a	100	84.385	Scleropages_formosus
ENSSMAG00000019052	-	100	87.738	ENSSDUG00000015801	-	98	87.466	Seriola_dumerili
ENSSMAG00000019052	-	94	80.919	ENSSDUG00000023183	rbfox3b	100	81.625	Seriola_dumerili
ENSSMAG00000019052	-	100	82.803	ENSSLDG00000000149	rbfox3b	100	82.289	Seriola_lalandi_dorsalis
ENSSMAG00000019052	-	100	91.008	ENSSLDG00000016098	-	98	91.008	Seriola_lalandi_dorsalis
ENSSMAG00000019052	-	98	80.000	ENSSPUG00000011733	RBFOX3	99	82.334	Sphenodon_punctatus
ENSSMAG00000019052	-	100	74.114	ENSSPAG00000017571	rbfox3b	99	74.114	Stegastes_partitus
ENSSMAG00000019052	-	87	82.657	ENSSPAG00000004898	-	85	83.217	Stegastes_partitus
ENSSMAG00000019052	-	86	82.721	ENSSSCG00000039498	RBFOX3	96	70.533	Sus_scrofa
ENSSMAG00000019052	-	100	77.019	ENSTRUG00000004894	rbfox3b	94	77.015	Takifugu_rubripes
ENSSMAG00000019052	-	100	73.988	ENSTNIG00000011278	rbfox3b	89	73.743	Tetraodon_nigroviridis
ENSSMAG00000019052	-	61	59.322	ENSTBEG00000004296	-	89	51.506	Tupaia_belangeri
ENSSMAG00000019052	-	95	62.824	ENSTTRG00000003676	RBFOX3	100	64.917	Tursiops_truncatus
ENSSMAG00000019052	-	95	80.066	ENSUAMG00000004668	RBFOX3	100	80.696	Ursus_americanus
ENSSMAG00000019052	-	98	79.834	ENSVVUG00000017864	RBFOX3	100	80.380	Vulpes_vulpes
ENSSMAG00000019052	-	100	65.089	ENSXETG00000020236	rbfox3	88	65.714	Xenopus_tropicalis
ENSSMAG00000019052	-	100	81.587	ENSXCOG00000018262	rbfox3b	100	78.594	Xiphophorus_couchianus
ENSSMAG00000019052	-	100	82.803	ENSXMAG00000012939	rbfox3b	96	82.289	Xiphophorus_maculatus