EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSMAG00000019090 (Gene tree)
Gene ID: -
Gene Symbol: npm1a
Alias: npm1|sb:cb487
Full Name: nucleophosmin 1a
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Plus strand
Length: 6851 bases
Position: chr4:15312928-15319778
Accession: ZDB-GENE-021028-1
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000031136	Nucleoplasmin	PF03066.15	9.2e-33	1	1
ENSSMAP00000031152	Nucleoplasmin	PF03066.15	9.3e-33	1	1
ENSSMAP00000031169	Nucleoplasmin	PF03066.15	9.8e-33	1	1
ENSSMAP00000031177	Nucleoplasmin	PF03066.15	9.8e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000031533	-	1369	-	ENSSMAP00000031152	296 (aa)	-	-
ENSSMAT00000031554	-	1402	-	ENSSMAP00000031169	307 (aa)	-	-
ENSSMAT00000031563	-	1085	-	ENSSMAP00000031177	307 (aa)	-	-
ENSSMAT00000031517	-	1366	-	ENSSMAP00000031136	295 (aa)	-	A0A2U9B8P0

Gene Model

Click here to download ENSSMAG00000019090's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000019090's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSMAG00000019090	npm1a	96	38.870	ENSSMAG00000008088	npm1b	97	37.457

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000019090	npm1a	100	74.671	ENSAPOG00000002813	npm1a	100	76.316	Acanthochromis_polyacanthus
ENSSMAG00000019090	npm1a	94	75.714	ENSACIG00000014201	npm1a	100	75.704	Amphilophus_citrinellus
ENSSMAG00000019090	npm1a	89	72.137	ENSAOCG00000004978	npm1a	100	68.702	Amphiprion_ocellaris
ENSSMAG00000019090	npm1a	100	76.412	ENSAPEG00000008594	npm1a	100	77.076	Amphiprion_percula
ENSSMAG00000019090	npm1a	100	77.885	ENSATEG00000008885	npm1a	100	77.885	Anabas_testudineus
ENSSMAG00000019090	npm1a	97	71.875	ENSACLG00000008376	npm1a	97	71.875	Astatotilapia_calliptera
ENSSMAG00000019090	npm1a	98	55.932	ENSAMXG00000010155	npm1a	99	58.305	Astyanax_mexicanus
ENSSMAG00000019090	npm1a	100	59.322	ENSCSEG00000011165	npm1a	100	81.646	Cynoglossus_semilaevis
ENSSMAG00000019090	npm1a	100	70.432	ENSCVAG00000008960	npm1a	100	70.764	Cyprinodon_variegatus
ENSSMAG00000019090	npm1a	98	64.138	ENSDARG00000014329	npm1a	96	71.613	Danio_rerio
ENSSMAG00000019090	npm1a	95	37.267	ENSEBUG00000012753	npm1a	87	36.156	Eptatretus_burgeri
ENSSMAG00000019090	npm1a	100	68.475	ENSELUG00000013705	npm1a	100	68.475	Esox_lucius
ENSSMAG00000019090	npm1a	100	71.148	ENSFHEG00000012496	npm1a	100	71.803	Fundulus_heteroclitus
ENSSMAG00000019090	npm1a	100	67.320	ENSGAFG00000013059	npm1a	100	67.320	Gambusia_affinis
ENSSMAG00000019090	npm1a	99	69.283	ENSGACG00000020319	npm1a	99	68.942	Gasterosteus_aculeatus
ENSSMAG00000019090	npm1a	99	70.533	ENSHBUG00000000776	npm1a	99	71.069	Haplochromis_burtoni
ENSSMAG00000019090	npm1a	100	56.536	ENSHCOG00000001059	npm1a	100	56.863	Hippocampus_comes
ENSSMAG00000019090	npm1a	98	63.973	ENSIPUG00000019452	npm1	99	63.300	Ictalurus_punctatus
ENSSMAG00000019090	npm1a	100	71.044	ENSKMAG00000010709	npm1a	100	70.707	Kryptolebias_marmoratus
ENSSMAG00000019090	npm1a	100	72.185	ENSLBEG00000008793	npm1a	100	72.517	Labrus_bergylta
ENSSMAG00000019090	npm1a	85	59.259	ENSLOCG00000009683	npm1a	100	60.000	Lepisosteus_oculatus
ENSSMAG00000019090	npm1a	100	77.258	ENSMAMG00000009344	npm1a	83	76.254	Mastacembelus_armatus
ENSSMAG00000019090	npm1a	99	72.871	ENSMZEG00005013717	npm1a	100	72.871	Maylandia_zebra
ENSSMAG00000019090	npm1a	95	77.660	ENSMMOG00000007980	npm1a	100	76.950	Mola_mola
ENSSMAG00000019090	npm1a	100	76.316	ENSMALG00000001146	npm1a	100	76.645	Monopterus_albus
ENSSMAG00000019090	npm1a	99	67.812	ENSNBRG00000013172	npm1a	100	67.812	Neolamprologus_brichardi
ENSSMAG00000019090	npm1a	99	72.185	ENSONIG00000001860	npm1a	98	72.848	Oreochromis_niloticus
ENSSMAG00000019090	npm1a	100	73.064	ENSORLG00000010179	npm1a	100	72.727	Oryzias_latipes
ENSSMAG00000019090	npm1a	100	75.338	ENSORLG00020020817	npm1a	100	75.676	Oryzias_latipes_hni
ENSSMAG00000019090	npm1a	100	73.401	ENSORLG00015003439	npm1a	100	73.064	Oryzias_latipes_hsok
ENSSMAG00000019090	npm1a	100	75.084	ENSOMEG00000007083	npm1a	100	74.747	Oryzias_melastigma
ENSSMAG00000019090	npm1a	100	56.066	ENSPKIG00000023943	npm1a	100	56.066	Paramormyrops_kingsleyae
ENSSMAG00000019090	npm1a	100	57.285	ENSPMGG00000011716	npm1a	100	59.333	Periophthalmus_magnuspinnatus
ENSSMAG00000019090	npm1a	100	67.327	ENSPFOG00000019173	npm1a	100	67.987	Poecilia_formosa
ENSSMAG00000019090	npm1a	100	70.066	ENSPLAG00000001093	npm1a	100	67.763	Poecilia_latipinna
ENSSMAG00000019090	npm1a	100	67.327	ENSPMEG00000012523	npm1a	100	67.987	Poecilia_mexicana
ENSSMAG00000019090	npm1a	100	68.977	ENSPREG00000001647	npm1a	100	68.977	Poecilia_reticulata
ENSSMAG00000019090	npm1a	99	72.611	ENSPNYG00000019321	npm1a	100	71.656	Pundamilia_nyererei
ENSSMAG00000019090	npm1a	98	65.306	ENSPNAG00000026891	npm1a	99	66.327	Pygocentrus_nattereri
ENSSMAG00000019090	npm1a	100	64.430	ENSSFOG00015007074	npm1a	100	62.081	Scleropages_formosus
ENSSMAG00000019090	npm1a	100	80.066	ENSSDUG00000015609	npm1a	100	79.402	Seriola_dumerili
ENSSMAG00000019090	npm1a	100	80.667	ENSSLDG00000017849	npm1a	100	81.000	Seriola_lalandi_dorsalis
ENSSMAG00000019090	npm1a	100	66.441	ENSSPAG00000021660	npm1a	100	67.797	Stegastes_partitus
ENSSMAG00000019090	npm1a	100	76.144	ENSTRUG00000024003	npm1a	100	76.471	Takifugu_rubripes
ENSSMAG00000019090	npm1a	100	75.084	ENSTNIG00000010773	npm1a	100	74.747	Tetraodon_nigroviridis
ENSSMAG00000019090	npm1a	99	63.729	ENSXCOG00000005958	npm1a	100	66.434	Xiphophorus_couchianus
ENSSMAG00000019090	npm1a	100	69.381	ENSXMAG00000000396	npm1a	100	68.730	Xiphophorus_maculatus