EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSMAG00000019777 (Gene tree)
Gene ID: -
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6 nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Plus strand
Length: 12207 bases
Position: chr4:5698280-5710486
Accession: ZDB-GENE-081107-52
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000032275	EST1	PF10374.9	5.6e-13	1	1
ENSSMAP00000032275	EST1_DNA_bind	PF10373.9	6.5e-55	1	1
ENSSMAP00000032275	PIN_4	PF13638.6	1.3e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000032673	-	5007	-	ENSSMAP00000032275	1664 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000019777's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000019777's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000019777	smg6	73	53.852	ENSG00000070366	SMG6	100	57.169	Homo_sapiens
ENSSMAG00000019777	smg6	100	77.585	ENSAPOG00000019448	smg6	100	77.791	Acanthochromis_polyacanthus
ENSSMAG00000019777	smg6	73	54.957	ENSAMEG00000007632	SMG6	83	55.409	Ailuropoda_melanoleuca
ENSSMAG00000019777	smg6	93	74.597	ENSACIG00000012997	smg6	100	74.210	Amphilophus_citrinellus
ENSSMAG00000019777	smg6	100	78.110	ENSAOCG00000002630	smg6	100	78.482	Amphiprion_ocellaris
ENSSMAG00000019777	smg6	100	78.050	ENSAPEG00000019101	smg6	100	78.362	Amphiprion_percula
ENSSMAG00000019777	smg6	100	78.708	ENSATEG00000006483	smg6	100	78.708	Anabas_testudineus
ENSSMAG00000019777	smg6	62	49.486	ENSACAG00000011783	SMG6	82	49.953	Anolis_carolinensis
ENSSMAG00000019777	smg6	73	54.942	ENSANAG00000035760	SMG6	83	55.469	Aotus_nancymaae
ENSSMAG00000019777	smg6	100	74.985	ENSACLG00000005288	smg6	100	76.240	Astatotilapia_calliptera
ENSSMAG00000019777	smg6	71	68.835	ENSAMXG00000017326	smg6	92	67.573	Astyanax_mexicanus
ENSSMAG00000019777	smg6	73	54.922	ENSBTAG00000000267	SMG6	83	55.538	Bos_taurus
ENSSMAG00000019777	smg6	73	55.066	ENSCJAG00000001820	SMG6	83	55.116	Callithrix_jacchus
ENSSMAG00000019777	smg6	78	53.150	ENSCAFG00000019260	SMG6	88	53.812	Canis_familiaris
ENSSMAG00000019777	smg6	78	53.150	ENSCAFG00020009770	SMG6	88	53.812	Canis_lupus_dingo
ENSSMAG00000019777	smg6	73	55.425	ENSCHIG00000021998	SMG6	83	55.538	Capra_hircus
ENSSMAG00000019777	smg6	73	54.779	ENSTSYG00000003406	SMG6	100	56.624	Carlito_syrichta
ENSSMAG00000019777	smg6	73	45.319	ENSCAPG00000016197	SMG6	83	49.356	Cavia_aperea
ENSSMAG00000019777	smg6	73	53.870	ENSCPOG00000014878	SMG6	88	58.108	Cavia_porcellus
ENSSMAG00000019777	smg6	73	54.716	ENSCCAG00000035801	SMG6	83	55.322	Cebus_capucinus
ENSSMAG00000019777	smg6	73	54.871	ENSCATG00000031956	SMG6	83	55.245	Cercocebus_atys
ENSSMAG00000019777	smg6	73	54.326	ENSCLAG00000006748	SMG6	87	58.108	Chinchilla_lanigera
ENSSMAG00000019777	smg6	73	55.105	ENSCSAG00000013800	SMG6	83	55.478	Chlorocebus_sabaeus
ENSSMAG00000019777	smg6	77	54.089	ENSCPBG00000020369	SMG6	99	53.938	Chrysemys_picta_bellii
ENSSMAG00000019777	smg6	73	54.793	ENSCANG00000031764	SMG6	100	57.713	Colobus_angolensis_palliatus
ENSSMAG00000019777	smg6	73	49.650	ENSCGRG00000007782	Smg6	88	49.370	Cricetulus_griseus_crigri
ENSSMAG00000019777	smg6	79	77.542	ENSCSEG00000012757	smg6	100	71.231	Cynoglossus_semilaevis
ENSSMAG00000019777	smg6	100	66.388	ENSCVAG00000012789	smg6	100	66.885	Cyprinodon_variegatus
ENSSMAG00000019777	smg6	100	55.608	ENSDARG00000100481	smg6	100	54.647	Danio_rerio
ENSSMAG00000019777	smg6	73	54.264	ENSDNOG00000048283	SMG6	83	54.567	Dasypus_novemcinctus
ENSSMAG00000019777	smg6	73	50.659	ENSDORG00000016614	Smg6	88	59.009	Dipodomys_ordii
ENSSMAG00000019777	smg6	66	87.500	ENSETEG00000016790	SMG6	76	87.500	Echinops_telfairi
ENSSMAG00000019777	smg6	58	47.557	ENSEBUG00000005059	smg6	61	47.600	Eptatretus_burgeri
ENSSMAG00000019777	smg6	73	55.278	ENSEASG00005009318	SMG6	83	55.807	Equus_asinus_asinus
ENSSMAG00000019777	smg6	73	55.278	ENSECAG00000006519	SMG6	83	55.807	Equus_caballus
ENSSMAG00000019777	smg6	73	47.050	ENSEEUG00000003493	SMG6	84	47.701	Erinaceus_europaeus
ENSSMAG00000019777	smg6	100	64.822	ENSELUG00000005934	smg6	100	57.637	Esox_lucius
ENSSMAG00000019777	smg6	73	55.027	ENSFCAG00000028817	SMG6	83	55.435	Felis_catus
ENSSMAG00000019777	smg6	76	52.880	ENSFALG00000006538	SMG6	89	52.880	Ficedula_albicollis
ENSSMAG00000019777	smg6	77	52.932	ENSFDAG00000015106	SMG6	87	57.658	Fukomys_damarensis
ENSSMAG00000019777	smg6	100	68.631	ENSFHEG00000013282	smg6	100	68.810	Fundulus_heteroclitus
ENSSMAG00000019777	smg6	73	53.972	ENSGALG00000003108	SMG6	81	54.170	Gallus_gallus
ENSSMAG00000019777	smg6	100	68.381	ENSGAFG00000000379	smg6	100	69.244	Gambusia_affinis
ENSSMAG00000019777	smg6	80	80.000	ENSGACG00000020521	smg6	98	80.000	Gasterosteus_aculeatus
ENSSMAG00000019777	smg6	73	53.798	ENSGAGG00000025617	SMG6	88	51.775	Gopherus_agassizii
ENSSMAG00000019777	smg6	73	54.638	ENSGGOG00000017156	SMG6	83	55.167	Gorilla_gorilla
ENSSMAG00000019777	smg6	100	74.866	ENSHBUG00000021311	smg6	100	75.224	Haplochromis_burtoni
ENSSMAG00000019777	smg6	73	54.180	ENSHGLG00000012882	SMG6	87	58.108	Heterocephalus_glaber_female
ENSSMAG00000019777	smg6	73	54.334	ENSHGLG00100017815	SMG6	87	58.108	Heterocephalus_glaber_male
ENSSMAG00000019777	smg6	65	69.605	ENSHCOG00000008761	smg6	84	70.248	Hippocampus_comes
ENSSMAG00000019777	smg6	100	53.227	ENSIPUG00000012493	smg6	100	53.389	Ictalurus_punctatus
ENSSMAG00000019777	smg6	73	54.708	ENSSTOG00000028127	SMG6	88	59.009	Ictidomys_tridecemlineatus
ENSSMAG00000019777	smg6	54	53.145	ENSJJAG00000015367	Smg6	75	52.037	Jaculus_jaculus
ENSSMAG00000019777	smg6	100	71.855	ENSKMAG00000000279	smg6	100	71.855	Kryptolebias_marmoratus
ENSSMAG00000019777	smg6	100	75.943	ENSLBEG00000002184	smg6	100	75.943	Labrus_bergylta
ENSSMAG00000019777	smg6	66	65.062	ENSLOCG00000006448	smg6	99	55.253	Lepisosteus_oculatus
ENSSMAG00000019777	smg6	73	54.264	ENSLAFG00000001261	SMG6	83	54.814	Loxodonta_africana
ENSSMAG00000019777	smg6	73	55.105	ENSMFAG00000003394	SMG6	83	55.478	Macaca_fascicularis
ENSSMAG00000019777	smg6	73	55.027	ENSMMUG00000023161	SMG6	83	55.400	Macaca_mulatta
ENSSMAG00000019777	smg6	73	52.771	ENSMNEG00000044592	SMG6	83	53.152	Macaca_nemestrina
ENSSMAG00000019777	smg6	69	58.741	ENSMLEG00000029353	SMG6	84	59.091	Mandrillus_leucophaeus
ENSSMAG00000019777	smg6	100	79.294	ENSMAMG00000020119	smg6	100	79.910	Mastacembelus_armatus
ENSSMAG00000019777	smg6	100	74.970	ENSMZEG00005024736	smg6	100	75.269	Maylandia_zebra
ENSSMAG00000019777	smg6	53	49.680	ENSMGAG00000005401	-	82	50.320	Meleagris_gallopavo
ENSSMAG00000019777	smg6	73	54.992	ENSMICG00000012913	SMG6	83	55.478	Microcebus_murinus
ENSSMAG00000019777	smg6	100	69.797	ENSMMOG00000010883	smg6	100	69.539	Mola_mola
ENSSMAG00000019777	smg6	73	55.504	ENSMODG00000010622	SMG6	87	53.720	Monodelphis_domestica
ENSSMAG00000019777	smg6	100	77.844	ENSMALG00000001106	smg6	100	77.844	Monopterus_albus
ENSSMAG00000019777	smg6	73	54.560	MGP_CAROLIEiJ_G0016729	Smg6	98	66.120	Mus_caroli
ENSSMAG00000019777	smg6	73	54.934	ENSMUSG00000038290	Smg6	96	67.042	Mus_musculus
ENSSMAG00000019777	smg6	85	54.297	MGP_PahariEiJ_G0017866	Smg6	96	66.197	Mus_pahari
ENSSMAG00000019777	smg6	77	53.289	MGP_SPRETEiJ_G0017572	Smg6	96	66.761	Mus_spretus
ENSSMAG00000019777	smg6	73	55.564	ENSMPUG00000013046	SMG6	83	55.642	Mustela_putorius_furo
ENSSMAG00000019777	smg6	73	54.839	ENSMLUG00000005739	SMG6	83	55.373	Myotis_lucifugus
ENSSMAG00000019777	smg6	76	53.655	ENSNGAG00000007287	Smg6	88	58.108	Nannospalax_galili
ENSSMAG00000019777	smg6	98	71.402	ENSNBRG00000009511	smg6	99	74.769	Neolamprologus_brichardi
ENSSMAG00000019777	smg6	73	54.638	ENSNLEG00000017171	SMG6	100	57.169	Nomascus_leucogenys
ENSSMAG00000019777	smg6	73	55.331	ENSMEUG00000015804	SMG6	85	54.984	Notamacropus_eugenii
ENSSMAG00000019777	smg6	50	59.067	ENSOPRG00000000579	SMG6	79	58.376	Ochotona_princeps
ENSSMAG00000019777	smg6	89	46.320	ENSODEG00000008038	SMG6	98	46.850	Octodon_degus
ENSSMAG00000019777	smg6	100	74.985	ENSONIG00000005594	smg6	99	80.635	Oreochromis_niloticus
ENSSMAG00000019777	smg6	99	54.609	ENSOCUG00000013018	SMG6	83	55.116	Oryctolagus_cuniculus
ENSSMAG00000019777	smg6	100	66.548	ENSORLG00000003317	smg6	100	66.964	Oryzias_latipes
ENSSMAG00000019777	smg6	100	66.865	ENSORLG00020015343	smg6	100	67.122	Oryzias_latipes_hni
ENSSMAG00000019777	smg6	100	67.004	ENSORLG00015020454	smg6	100	67.479	Oryzias_latipes_hsok
ENSSMAG00000019777	smg6	100	65.832	ENSOMEG00000010838	smg6	100	66.905	Oryzias_melastigma
ENSSMAG00000019777	smg6	73	55.105	ENSOGAG00000004483	SMG6	83	55.504	Otolemur_garnettii
ENSSMAG00000019777	smg6	73	55.504	ENSOARG00000015076	SMG6	85	55.616	Ovis_aries
ENSSMAG00000019777	smg6	73	54.560	ENSPPAG00000043296	SMG6	83	55.089	Pan_paniscus
ENSSMAG00000019777	smg6	73	55.113	ENSPPRG00000014581	SMG6	83	55.521	Panthera_pardus
ENSSMAG00000019777	smg6	73	55.113	ENSPTIG00000008925	SMG6	100	57.350	Panthera_tigris_altaica
ENSSMAG00000019777	smg6	73	54.638	ENSPTRG00000008544	SMG6	100	57.169	Pan_troglodytes
ENSSMAG00000019777	smg6	73	55.027	ENSPANG00000024588	SMG6	83	55.400	Papio_anubis
ENSSMAG00000019777	smg6	66	53.074	ENSPSIG00000006660	SMG6	81	53.155	Pelodiscus_sinensis
ENSSMAG00000019777	smg6	95	80.299	ENSPMGG00000000844	smg6	100	79.891	Periophthalmus_magnuspinnatus
ENSSMAG00000019777	smg6	73	54.419	ENSPEMG00000020707	Smg6	89	57.658	Peromyscus_maniculatus_bairdii
ENSSMAG00000019777	smg6	100	69.785	ENSPFOG00000012035	smg6	97	74.688	Poecilia_formosa
ENSSMAG00000019777	smg6	100	69.964	ENSPLAG00000017660	smg6	100	69.964	Poecilia_latipinna
ENSSMAG00000019777	smg6	100	69.964	ENSPMEG00000000258	smg6	100	69.964	Poecilia_mexicana
ENSSMAG00000019777	smg6	100	69.547	ENSPREG00000010066	smg6	100	69.547	Poecilia_reticulata
ENSSMAG00000019777	smg6	73	50.894	ENSPPYG00000007790	SMG6	83	51.433	Pongo_abelii
ENSSMAG00000019777	smg6	70	58.108	ENSPCAG00000000552	SMG6	83	52.329	Procavia_capensis
ENSSMAG00000019777	smg6	73	54.934	ENSPCOG00000020925	SMG6	83	55.322	Propithecus_coquereli
ENSSMAG00000019777	smg6	73	51.529	ENSPVAG00000002159	SMG6	83	52.031	Pteropus_vampyrus
ENSSMAG00000019777	smg6	91	74.177	ENSPNYG00000024151	smg6	99	74.638	Pundamilia_nyererei
ENSSMAG00000019777	smg6	86	60.706	ENSPNAG00000015480	smg6	100	51.908	Pygocentrus_nattereri
ENSSMAG00000019777	smg6	73	54.225	ENSRNOG00000003041	Smg6	97	65.301	Rattus_norvegicus
ENSSMAG00000019777	smg6	73	54.961	ENSRBIG00000024746	SMG6	83	55.400	Rhinopithecus_bieti
ENSSMAG00000019777	smg6	73	54.961	ENSRROG00000030423	SMG6	100	57.713	Rhinopithecus_roxellana
ENSSMAG00000019777	smg6	73	54.638	ENSSBOG00000022518	SMG6	83	53.804	Saimiri_boliviensis_boliviensis
ENSSMAG00000019777	smg6	73	55.183	ENSSHAG00000010045	SMG6	83	54.871	Sarcophilus_harrisii
ENSSMAG00000019777	smg6	91	54.724	ENSSFOG00015005436	smg6	91	55.047	Scleropages_formosus
ENSSMAG00000019777	smg6	100	84.901	ENSSDUG00000016412	smg6	100	85.201	Seriola_dumerili
ENSSMAG00000019777	smg6	91	84.560	ENSSLDG00000020747	smg6	98	84.757	Seriola_lalandi_dorsalis
ENSSMAG00000019777	smg6	73	54.796	ENSSPUG00000007152	SMG6	83	54.646	Sphenodon_punctatus
ENSSMAG00000019777	smg6	100	78.695	ENSSPAG00000015633	smg6	100	78.469	Stegastes_partitus
ENSSMAG00000019777	smg6	73	55.113	ENSSSCG00000017826	SMG6	83	55.486	Sus_scrofa
ENSSMAG00000019777	smg6	64	59.455	ENSTGUG00000005836	SMG6	88	52.932	Taeniopygia_guttata
ENSSMAG00000019777	smg6	92	69.374	ENSTRUG00000000358	smg6	98	69.727	Takifugu_rubripes
ENSSMAG00000019777	smg6	92	76.810	ENSTNIG00000016164	smg6	100	77.427	Tetraodon_nigroviridis
ENSSMAG00000019777	smg6	73	51.794	ENSTBEG00000011424	SMG6	83	52.150	Tupaia_belangeri
ENSSMAG00000019777	smg6	66	55.903	ENSTTRG00000001175	SMG6	74	56.046	Tursiops_truncatus
ENSSMAG00000019777	smg6	73	54.871	ENSUAMG00000025152	SMG6	85	55.374	Ursus_americanus
ENSSMAG00000019777	smg6	73	54.957	ENSUMAG00000009306	SMG6	85	55.486	Ursus_maritimus
ENSSMAG00000019777	smg6	59	87.500	ENSVPAG00000000225	SMG6	70	87.500	Vicugna_pacos
ENSSMAG00000019777	smg6	78	53.146	ENSVVUG00000021727	SMG6	89	54.113	Vulpes_vulpes
ENSSMAG00000019777	smg6	65	54.095	ENSXETG00000023799	SMG6	95	47.416	Xenopus_tropicalis
ENSSMAG00000019777	smg6	98	67.518	ENSXCOG00000009867	smg6	99	67.336	Xiphophorus_couchianus
ENSSMAG00000019777	smg6	100	69.231	ENSXMAG00000010321	smg6	100	69.744	Xiphophorus_maculatus