EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSMAG00000020118 (Gene tree)
Gene ID: -
Gene Symbol: smndc1
Alias: TDRD10|spf30|wu:fb37h07|wu:fc23a07
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Plus strand
Length: 29832 bases
Position: chr15:3928145-3957976
Accession: ZDB-GENE-030131-614
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000032824	TUDOR	PF00567.24	2e-05	1	1
ENSSMAP00000032830	TUDOR	PF00567.24	2.2e-05	1	1
ENSSMAP00000032830	SMN	PF06003.12	1.7e-15	1	1
ENSSMAP00000032824	SMN	PF06003.12	2.1e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000033234	-	1385	-	ENSSMAP00000032824	239 (aa)	-	-
ENSSMAT00000033240	-	1119	-	ENSSMAP00000032830	238 (aa)	-	A0A2U9CBD0

Gene Model

Click here to download ENSSMAG00000020118's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000020118's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000020118	smndc1	100	76.050	ENSG00000119953	SMNDC1	100	76.050	Homo_sapiens
ENSSMAG00000020118	smndc1	100	89.916	ENSAPOG00000021772	smndc1	100	89.916	Acanthochromis_polyacanthus
ENSSMAG00000020118	smndc1	100	76.050	ENSAMEG00000005251	SMNDC1	100	76.050	Ailuropoda_melanoleuca
ENSSMAG00000020118	smndc1	100	89.916	ENSACIG00000004819	smndc1	100	89.916	Amphilophus_citrinellus
ENSSMAG00000020118	smndc1	100	88.655	ENSAOCG00000017869	smndc1	100	88.655	Amphiprion_ocellaris
ENSSMAG00000020118	smndc1	100	88.655	ENSAPEG00000007752	smndc1	100	88.655	Amphiprion_percula
ENSSMAG00000020118	smndc1	100	91.597	ENSATEG00000006830	smndc1	100	91.597	Anabas_testudineus
ENSSMAG00000020118	smndc1	83	76.768	ENSAPLG00000004322	SMNDC1	100	76.768	Anas_platyrhynchos
ENSSMAG00000020118	smndc1	100	76.471	ENSACAG00000005983	SMNDC1	100	76.471	Anolis_carolinensis
ENSSMAG00000020118	smndc1	100	76.050	ENSANAG00000032875	SMNDC1	100	76.050	Aotus_nancymaae
ENSSMAG00000020118	smndc1	100	88.655	ENSACLG00000016360	smndc1	100	88.655	Astatotilapia_calliptera
ENSSMAG00000020118	smndc1	100	80.672	ENSAMXG00000020310	smndc1	100	80.672	Astyanax_mexicanus
ENSSMAG00000020118	smndc1	100	78.243	ENSBTAG00000000551	SMNDC1	100	78.243	Bos_taurus
ENSSMAG00000020118	smndc1	100	76.050	ENSCJAG00000018624	SMNDC1	100	76.050	Callithrix_jacchus
ENSSMAG00000020118	smndc1	100	76.050	ENSCAFG00000010720	SMNDC1	100	76.050	Canis_familiaris
ENSSMAG00000020118	smndc1	100	76.050	ENSCAFG00020011913	SMNDC1	100	76.050	Canis_lupus_dingo
ENSSMAG00000020118	smndc1	100	78.243	ENSCHIG00000010604	SMNDC1	100	78.243	Capra_hircus
ENSSMAG00000020118	smndc1	100	76.050	ENSTSYG00000026454	SMNDC1	100	76.050	Carlito_syrichta
ENSSMAG00000020118	smndc1	100	62.500	ENSCAPG00000009132	SMNDC1	100	72.637	Cavia_aperea
ENSSMAG00000020118	smndc1	100	76.050	ENSCPOG00000031666	SMNDC1	100	76.050	Cavia_porcellus
ENSSMAG00000020118	smndc1	100	76.050	ENSCCAG00000021793	SMNDC1	100	76.050	Cebus_capucinus
ENSSMAG00000020118	smndc1	100	75.630	ENSCATG00000035910	SMNDC1	100	75.630	Cercocebus_atys
ENSSMAG00000020118	smndc1	100	76.050	ENSCLAG00000002838	SMNDC1	100	76.050	Chinchilla_lanigera
ENSSMAG00000020118	smndc1	100	76.050	ENSCSAG00000005169	SMNDC1	100	76.050	Chlorocebus_sabaeus
ENSSMAG00000020118	smndc1	81	71.503	ENSCHOG00000002936	SMNDC1	100	71.503	Choloepus_hoffmanni
ENSSMAG00000020118	smndc1	100	76.050	ENSCPBG00000012837	SMNDC1	100	76.050	Chrysemys_picta_bellii
ENSSMAG00000020118	smndc1	100	69.748	ENSCANG00000034620	-	100	69.748	Colobus_angolensis_palliatus
ENSSMAG00000020118	smndc1	100	76.050	ENSCANG00000031720	-	100	76.050	Colobus_angolensis_palliatus
ENSSMAG00000020118	smndc1	100	61.506	ENSCANG00000036994	-	100	61.506	Colobus_angolensis_palliatus
ENSSMAG00000020118	smndc1	100	75.630	ENSCGRG00001012973	Smndc1	100	75.630	Cricetulus_griseus_chok1gshd
ENSSMAG00000020118	smndc1	100	75.630	ENSCGRG00000012396	Smndc1	100	75.630	Cricetulus_griseus_crigri
ENSSMAG00000020118	smndc1	100	86.975	ENSCSEG00000015621	smndc1	100	86.975	Cynoglossus_semilaevis
ENSSMAG00000020118	smndc1	100	86.975	ENSCVAG00000020432	smndc1	100	86.975	Cyprinodon_variegatus
ENSSMAG00000020118	smndc1	100	83.682	ENSDARG00000056235	smndc1	100	83.682	Danio_rerio
ENSSMAG00000020118	smndc1	100	76.050	ENSDNOG00000016387	SMNDC1	83	76.050	Dasypus_novemcinctus
ENSSMAG00000020118	smndc1	100	76.050	ENSDORG00000023715	Smndc1	100	76.050	Dipodomys_ordii
ENSSMAG00000020118	smndc1	97	40.316	FBgn0039977	CG17454	98	42.126	Drosophila_melanogaster
ENSSMAG00000020118	smndc1	100	67.220	ENSEBUG00000010929	smndc1	100	68.880	Eptatretus_burgeri
ENSSMAG00000020118	smndc1	100	76.050	ENSEASG00005014930	SMNDC1	100	76.050	Equus_asinus_asinus
ENSSMAG00000020118	smndc1	100	76.050	ENSECAG00000029973	SMNDC1	100	76.050	Equus_caballus
ENSSMAG00000020118	smndc1	83	55.051	ENSEEUG00000013407	-	100	55.051	Erinaceus_europaeus
ENSSMAG00000020118	smndc1	100	84.874	ENSELUG00000000227	smndc1	100	84.874	Esox_lucius
ENSSMAG00000020118	smndc1	100	76.050	ENSFCAG00000027353	SMNDC1	100	76.050	Felis_catus
ENSSMAG00000020118	smndc1	100	77.311	ENSFALG00000002306	SMNDC1	100	77.311	Ficedula_albicollis
ENSSMAG00000020118	smndc1	100	76.050	ENSFDAG00000006468	SMNDC1	100	76.050	Fukomys_damarensis
ENSSMAG00000020118	smndc1	100	89.496	ENSFHEG00000020150	smndc1	100	89.496	Fundulus_heteroclitus
ENSSMAG00000020118	smndc1	100	83.613	ENSGMOG00000016585	smndc1	100	83.613	Gadus_morhua
ENSSMAG00000020118	smndc1	100	77.311	ENSGALG00000008561	SMNDC1	100	77.311	Gallus_gallus
ENSSMAG00000020118	smndc1	100	89.916	ENSGAFG00000011582	smndc1	100	89.916	Gambusia_affinis
ENSSMAG00000020118	smndc1	100	91.176	ENSGACG00000009468	smndc1	100	91.176	Gasterosteus_aculeatus
ENSSMAG00000020118	smndc1	100	76.050	ENSGAGG00000024547	SMNDC1	100	76.050	Gopherus_agassizii
ENSSMAG00000020118	smndc1	100	76.050	ENSGGOG00000010071	SMNDC1	100	76.050	Gorilla_gorilla
ENSSMAG00000020118	smndc1	100	88.655	ENSHBUG00000017596	smndc1	100	88.655	Haplochromis_burtoni
ENSSMAG00000020118	smndc1	100	76.050	ENSHGLG00000013390	-	100	76.050	Heterocephalus_glaber_female
ENSSMAG00000020118	smndc1	100	54.918	ENSHGLG00000001157	-	100	54.918	Heterocephalus_glaber_female
ENSSMAG00000020118	smndc1	100	61.066	ENSHGLG00100004278	-	100	59.350	Heterocephalus_glaber_male
ENSSMAG00000020118	smndc1	100	76.050	ENSHGLG00100004814	-	100	76.050	Heterocephalus_glaber_male
ENSSMAG00000020118	smndc1	100	84.937	ENSHCOG00000000783	smndc1	100	84.937	Hippocampus_comes
ENSSMAG00000020118	smndc1	100	84.874	ENSIPUG00000004217	smndc1	100	84.874	Ictalurus_punctatus
ENSSMAG00000020118	smndc1	100	76.050	ENSSTOG00000006088	SMNDC1	100	76.050	Ictidomys_tridecemlineatus
ENSSMAG00000020118	smndc1	100	76.050	ENSJJAG00000019974	Smndc1	100	76.050	Jaculus_jaculus
ENSSMAG00000020118	smndc1	100	86.975	ENSKMAG00000020134	smndc1	100	86.975	Kryptolebias_marmoratus
ENSSMAG00000020118	smndc1	100	90.756	ENSLBEG00000004598	smndc1	100	90.756	Labrus_bergylta
ENSSMAG00000020118	smndc1	100	75.210	ENSLACG00000007784	SMNDC1	100	75.210	Latimeria_chalumnae
ENSSMAG00000020118	smndc1	100	81.513	ENSLOCG00000012355	smndc1	100	81.513	Lepisosteus_oculatus
ENSSMAG00000020118	smndc1	100	75.630	ENSLAFG00000014353	SMNDC1	100	75.630	Loxodonta_africana
ENSSMAG00000020118	smndc1	100	76.050	ENSMFAG00000002433	-	100	76.050	Macaca_fascicularis
ENSSMAG00000020118	smndc1	100	63.445	ENSMFAG00000038381	-	100	63.445	Macaca_fascicularis
ENSSMAG00000020118	smndc1	100	76.050	ENSMMUG00000007775	SMNDC1	100	76.050	Macaca_mulatta
ENSSMAG00000020118	smndc1	100	63.445	ENSMMUG00000045875	-	100	63.445	Macaca_mulatta
ENSSMAG00000020118	smndc1	100	66.807	ENSMNEG00000033853	-	100	66.807	Macaca_nemestrina
ENSSMAG00000020118	smndc1	100	76.050	ENSMNEG00000042963	-	100	76.050	Macaca_nemestrina
ENSSMAG00000020118	smndc1	100	71.074	ENSMLEG00000040236	SMNDC1	100	70.711	Mandrillus_leucophaeus
ENSSMAG00000020118	smndc1	95	83.128	ENSMAMG00000018233	smndc1	99	83.128	Mastacembelus_armatus
ENSSMAG00000020118	smndc1	100	88.655	ENSMZEG00005027510	smndc1	100	88.655	Maylandia_zebra
ENSSMAG00000020118	smndc1	84	77.000	ENSMGAG00000010777	SMNDC1	84	77.000	Meleagris_gallopavo
ENSSMAG00000020118	smndc1	100	76.050	ENSMAUG00000012243	-	100	76.050	Mesocricetus_auratus
ENSSMAG00000020118	smndc1	99	62.447	ENSMAUG00000005459	-	93	63.291	Mesocricetus_auratus
ENSSMAG00000020118	smndc1	100	75.630	ENSMICG00000027336	-	100	75.630	Microcebus_murinus
ENSSMAG00000020118	smndc1	100	65.966	ENSMICG00000031640	-	100	65.966	Microcebus_murinus
ENSSMAG00000020118	smndc1	100	75.630	ENSMOCG00000002458	Smndc1	100	75.630	Microtus_ochrogaster
ENSSMAG00000020118	smndc1	100	86.975	ENSMMOG00000008856	smndc1	100	86.975	Mola_mola
ENSSMAG00000020118	smndc1	100	76.050	ENSMODG00000010542	SMNDC1	100	76.050	Monodelphis_domestica
ENSSMAG00000020118	smndc1	100	91.597	ENSMALG00000017598	smndc1	100	91.597	Monopterus_albus
ENSSMAG00000020118	smndc1	100	75.630	MGP_CAROLIEiJ_G0023072	Smndc1	100	75.630	Mus_caroli
ENSSMAG00000020118	smndc1	100	75.630	ENSMUSG00000025024	Smndc1	100	75.630	Mus_musculus
ENSSMAG00000020118	smndc1	100	75.630	MGP_PahariEiJ_G0014560	Smndc1	100	75.630	Mus_pahari
ENSSMAG00000020118	smndc1	100	75.630	MGP_SPRETEiJ_G0023993	Smndc1	100	75.630	Mus_spretus
ENSSMAG00000020118	smndc1	100	76.050	ENSMPUG00000002089	SMNDC1	100	76.050	Mustela_putorius_furo
ENSSMAG00000020118	smndc1	100	76.050	ENSMLUG00000016007	SMNDC1	100	76.050	Myotis_lucifugus
ENSSMAG00000020118	smndc1	100	76.471	ENSNGAG00000006833	Smndc1	100	76.471	Nannospalax_galili
ENSSMAG00000020118	smndc1	100	89.076	ENSNBRG00000017089	smndc1	100	89.076	Neolamprologus_brichardi
ENSSMAG00000020118	smndc1	100	76.050	ENSNLEG00000015471	SMNDC1	100	76.050	Nomascus_leucogenys
ENSSMAG00000020118	smndc1	70	59.281	ENSMEUG00000010120	-	99	54.500	Notamacropus_eugenii
ENSSMAG00000020118	smndc1	100	76.050	ENSOPRG00000015348	SMNDC1	100	76.050	Ochotona_princeps
ENSSMAG00000020118	smndc1	100	54.622	ENSODEG00000007594	-	100	52.941	Octodon_degus
ENSSMAG00000020118	smndc1	100	89.076	ENSONIG00000000434	smndc1	100	89.076	Oreochromis_niloticus
ENSSMAG00000020118	smndc1	100	76.050	ENSOANG00000001598	SMNDC1	100	76.050	Ornithorhynchus_anatinus
ENSSMAG00000020118	smndc1	100	75.630	ENSOCUG00000008145	-	100	75.630	Oryctolagus_cuniculus
ENSSMAG00000020118	smndc1	100	56.723	ENSOCUG00000012274	-	100	57.983	Oryctolagus_cuniculus
ENSSMAG00000020118	smndc1	100	82.773	ENSORLG00000005934	smndc1	95	82.773	Oryzias_latipes
ENSSMAG00000020118	smndc1	100	82.773	ENSORLG00020008796	smndc1	95	82.773	Oryzias_latipes_hni
ENSSMAG00000020118	smndc1	100	82.353	ENSORLG00015013666	smndc1	100	82.353	Oryzias_latipes_hsok
ENSSMAG00000020118	smndc1	100	79.832	ENSOMEG00000007590	smndc1	100	79.832	Oryzias_melastigma
ENSSMAG00000020118	smndc1	100	78.243	ENSOGAG00000000571	SMNDC1	100	78.243	Otolemur_garnettii
ENSSMAG00000020118	smndc1	100	78.243	ENSOARG00000009500	SMNDC1	100	78.243	Ovis_aries
ENSSMAG00000020118	smndc1	100	76.050	ENSPPAG00000027815	SMNDC1	100	76.050	Pan_paniscus
ENSSMAG00000020118	smndc1	100	76.050	ENSPPRG00000013749	SMNDC1	100	76.050	Panthera_pardus
ENSSMAG00000020118	smndc1	100	76.050	ENSPTIG00000011451	SMNDC1	100	76.050	Panthera_tigris_altaica
ENSSMAG00000020118	smndc1	100	76.050	ENSPTRG00000002937	SMNDC1	100	76.050	Pan_troglodytes
ENSSMAG00000020118	smndc1	100	72.269	ENSPANG00000031346	-	100	72.269	Papio_anubis
ENSSMAG00000020118	smndc1	100	76.050	ENSPANG00000020805	-	100	76.050	Papio_anubis
ENSSMAG00000020118	smndc1	100	80.252	ENSPKIG00000017164	smndc1	100	80.252	Paramormyrops_kingsleyae
ENSSMAG00000020118	smndc1	100	76.050	ENSPSIG00000012257	SMNDC1	100	76.050	Pelodiscus_sinensis
ENSSMAG00000020118	smndc1	100	83.264	ENSPMGG00000015651	smndc1	100	82.353	Periophthalmus_magnuspinnatus
ENSSMAG00000020118	smndc1	100	76.050	ENSPEMG00000022058	Smndc1	100	76.050	Peromyscus_maniculatus_bairdii
ENSSMAG00000020118	smndc1	100	65.432	ENSPMAG00000007705	smndc1	100	65.432	Petromyzon_marinus
ENSSMAG00000020118	smndc1	95	57.965	ENSPCIG00000009693	-	98	57.965	Phascolarctos_cinereus
ENSSMAG00000020118	smndc1	100	76.050	ENSPCIG00000018419	SMNDC1	100	76.050	Phascolarctos_cinereus
ENSSMAG00000020118	smndc1	100	90.336	ENSPFOG00000017113	smndc1	100	90.336	Poecilia_formosa
ENSSMAG00000020118	smndc1	100	89.916	ENSPLAG00000010372	smndc1	100	89.916	Poecilia_latipinna
ENSSMAG00000020118	smndc1	100	89.916	ENSPMEG00000012288	smndc1	100	89.916	Poecilia_mexicana
ENSSMAG00000020118	smndc1	100	88.235	ENSPREG00000012279	smndc1	100	88.235	Poecilia_reticulata
ENSSMAG00000020118	smndc1	100	76.050	ENSPPYG00000002643	SMNDC1	100	76.050	Pongo_abelii
ENSSMAG00000020118	smndc1	81	71.503	ENSPCAG00000016183	SMNDC1	100	71.503	Procavia_capensis
ENSSMAG00000020118	smndc1	100	75.630	ENSPCOG00000024343	SMNDC1	100	75.630	Propithecus_coquereli
ENSSMAG00000020118	smndc1	100	60.084	ENSPVAG00000004368	SMNDC1	100	60.084	Pteropus_vampyrus
ENSSMAG00000020118	smndc1	83	88.384	ENSPNYG00000024093	smndc1	86	88.384	Pundamilia_nyererei
ENSSMAG00000020118	smndc1	100	80.252	ENSPNAG00000025285	smndc1	100	80.252	Pygocentrus_nattereri
ENSSMAG00000020118	smndc1	100	75.630	ENSRNOG00000014833	Smndc1	100	75.630	Rattus_norvegicus
ENSSMAG00000020118	smndc1	100	75.630	ENSRBIG00000000224	-	100	75.630	Rhinopithecus_bieti
ENSSMAG00000020118	smndc1	100	63.025	ENSRBIG00000032452	-	100	63.025	Rhinopithecus_bieti
ENSSMAG00000020118	smndc1	100	76.050	ENSRROG00000044992	-	100	76.050	Rhinopithecus_roxellana
ENSSMAG00000020118	smndc1	100	63.025	ENSRROG00000039125	-	100	63.025	Rhinopithecus_roxellana
ENSSMAG00000020118	smndc1	100	76.050	ENSSBOG00000026789	SMNDC1	100	76.050	Saimiri_boliviensis_boliviensis
ENSSMAG00000020118	smndc1	100	76.050	ENSSHAG00000015189	SMNDC1	100	76.050	Sarcophilus_harrisii
ENSSMAG00000020118	smndc1	100	78.992	ENSSFOG00015008311	smndc1	100	78.992	Scleropages_formosus
ENSSMAG00000020118	smndc1	100	93.697	ENSSDUG00000015330	smndc1	100	93.697	Seriola_dumerili
ENSSMAG00000020118	smndc1	100	93.277	ENSSLDG00000017325	smndc1	100	93.277	Seriola_lalandi_dorsalis
ENSSMAG00000020118	smndc1	100	76.050	ENSSARG00000006063	SMNDC1	100	76.050	Sorex_araneus
ENSSMAG00000020118	smndc1	100	77.824	ENSSPUG00000004574	SMNDC1	100	77.824	Sphenodon_punctatus
ENSSMAG00000020118	smndc1	100	91.597	ENSSPAG00000000338	smndc1	100	91.597	Stegastes_partitus
ENSSMAG00000020118	smndc1	100	76.050	ENSSSCG00000030507	SMNDC1	100	76.050	Sus_scrofa
ENSSMAG00000020118	smndc1	100	77.311	ENSTGUG00000010599	SMNDC1	100	77.311	Taeniopygia_guttata
ENSSMAG00000020118	smndc1	100	85.294	ENSTRUG00000023281	smndc1	100	85.294	Takifugu_rubripes
ENSSMAG00000020118	smndc1	100	84.874	ENSTNIG00000013331	smndc1	100	84.874	Tetraodon_nigroviridis
ENSSMAG00000020118	smndc1	100	76.050	ENSTBEG00000014337	SMNDC1	100	76.050	Tupaia_belangeri
ENSSMAG00000020118	smndc1	100	76.050	ENSUAMG00000008142	SMNDC1	100	76.050	Ursus_americanus
ENSSMAG00000020118	smndc1	100	76.050	ENSUMAG00000023722	SMNDC1	100	76.050	Ursus_maritimus
ENSSMAG00000020118	smndc1	83	75.758	ENSVPAG00000003402	SMNDC1	100	75.758	Vicugna_pacos
ENSSMAG00000020118	smndc1	100	76.050	ENSVVUG00000007820	SMNDC1	100	76.050	Vulpes_vulpes
ENSSMAG00000020118	smndc1	60	62.676	ENSXETG00000015415	SMNDC1	100	62.676	Xenopus_tropicalis
ENSSMAG00000020118	smndc1	100	90.756	ENSXCOG00000009159	smndc1	100	90.756	Xiphophorus_couchianus
ENSSMAG00000020118	smndc1	100	90.756	ENSXMAG00000012755	smndc1	100	90.756	Xiphophorus_maculatus