EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSMAG00000020467 (Gene tree)
Gene ID: -
Gene Symbol: prdm1b
Alias: -
Full Name: PR domain containing 1b%2C with ZNF domain
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Minus strand
Length: 13904 bases
Position: chr22:4531276-4545179
Accession: ZDB-GENE-080618-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000033448	zf-C2H2	PF00096.26	4.3e-19	1	3
ENSSMAP00000033448	zf-C2H2	PF00096.26	4.3e-19	2	3
ENSSMAP00000033448	zf-C2H2	PF00096.26	4.3e-19	3	3
ENSSMAP00000033453	zf-C2H2	PF00096.26	5.4e-19	1	3
ENSSMAP00000033453	zf-C2H2	PF00096.26	5.4e-19	2	3
ENSSMAP00000033453	zf-C2H2	PF00096.26	5.4e-19	3	3
ENSSMAP00000033443	zf-C2H2	PF00096.26	1.2e-18	1	3
ENSSMAP00000033443	zf-C2H2	PF00096.26	1.2e-18	2	3
ENSSMAP00000033443	zf-C2H2	PF00096.26	1.2e-18	3	3
ENSSMAP00000033467	zf-C2H2	PF00096.26	3.1e-11	1	1
ENSSMAP00000033448	zf-met	PF12874.7	3e-07	1	1
ENSSMAP00000033453	zf-met	PF12874.7	3.8e-07	1	1
ENSSMAP00000033443	zf-met	PF12874.7	8.3e-07	1	1
ENSSMAP00000033467	zf-met	PF12874.7	0.00029	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000033876	-	5401	-	ENSSMAP00000033453	625 (aa)	-	-
ENSSMAT00000033870	-	5434	-	ENSSMAP00000033448	601 (aa)	-	-
ENSSMAT00000033888	-	2079	-	ENSSMAP00000033467	692 (aa)	-	-
ENSSMAT00000033865	-	5417	-	ENSSMAP00000033443	719 (aa)	-	A0A2U9CY65

Gene Model

Click here to download ENSSMAG00000020467's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000020467's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSMAG00000020467	prdm1b	91	38.798	ENSSMAG00000017518	-	54	54.217

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000020467	prdm1b	92	40.080	ENSAPOG00000014135	-	90	36.364	Acanthochromis_polyacanthus
ENSSMAG00000020467	prdm1b	76	69.737	ENSAPOG00000022084	prdm1b	95	70.614	Acanthochromis_polyacanthus
ENSSMAG00000020467	prdm1b	97	76.481	ENSACIG00000014426	prdm1b	98	76.183	Amphilophus_citrinellus
ENSSMAG00000020467	prdm1b	55	71.429	ENSACIG00000009747	-	57	57.055	Amphilophus_citrinellus
ENSSMAG00000020467	prdm1b	94	76.909	ENSAOCG00000002230	prdm1b	98	77.055	Amphiprion_ocellaris
ENSSMAG00000020467	prdm1b	100	78.442	ENSAPEG00000019826	prdm1b	100	78.442	Amphiprion_percula
ENSSMAG00000020467	prdm1b	61	70.000	ENSATEG00000021017	prdm1a	55	60.241	Anabas_testudineus
ENSSMAG00000020467	prdm1b	100	85.350	ENSATEG00000006924	prdm1b	100	85.350	Anabas_testudineus
ENSSMAG00000020467	prdm1b	60	55.215	ENSATEG00000014034	-	53	55.215	Anabas_testudineus
ENSSMAG00000020467	prdm1b	93	80.680	ENSACLG00000005487	prdm1b	90	80.446	Astatotilapia_calliptera
ENSSMAG00000020467	prdm1b	64	68.000	ENSCSEG00000009707	prdm1a	68	54.802	Cynoglossus_semilaevis
ENSSMAG00000020467	prdm1b	60	70.000	ENSCVAG00000019081	prdm1a	65	55.429	Cyprinodon_variegatus
ENSSMAG00000020467	prdm1b	100	77.593	ENSCVAG00000016746	prdm1b	100	77.732	Cyprinodon_variegatus
ENSSMAG00000020467	prdm1b	100	77.512	ENSFHEG00000019848	prdm1b	100	77.352	Fundulus_heteroclitus
ENSSMAG00000020467	prdm1b	59	75.510	ENSGAFG00000013012	-	60	53.988	Gambusia_affinis
ENSSMAG00000020467	prdm1b	98	76.040	ENSGAFG00000016191	prdm1b	97	76.252	Gambusia_affinis
ENSSMAG00000020467	prdm1b	81	86.188	ENSGACG00000002716	prdm1b	100	72.676	Gasterosteus_aculeatus
ENSSMAG00000020467	prdm1b	93	80.501	ENSHBUG00000001475	prdm1b	95	80.723	Haplochromis_burtoni
ENSSMAG00000020467	prdm1b	100	75.041	ENSHCOG00000003617	prdm1b	100	75.040	Hippocampus_comes
ENSSMAG00000020467	prdm1b	87	70.930	ENSIPUG00000013740	prdm1b	94	56.745	Ictalurus_punctatus
ENSSMAG00000020467	prdm1b	92	38.881	ENSKMAG00000016247	-	52	55.828	Kryptolebias_marmoratus
ENSSMAG00000020467	prdm1b	54	60.593	ENSKMAG00000017597	prdm1a	54	60.593	Kryptolebias_marmoratus
ENSSMAG00000020467	prdm1b	92	71.254	ENSKMAG00000011218	prdm1b	91	71.254	Kryptolebias_marmoratus
ENSSMAG00000020467	prdm1b	100	84.786	ENSLBEG00000020955	prdm1b	100	84.786	Labrus_bergylta
ENSSMAG00000020467	prdm1b	83	72.619	ENSLOCG00000004978	prdm1b	78	72.619	Lepisosteus_oculatus
ENSSMAG00000020467	prdm1b	100	78.974	ENSMZEG00005026361	prdm1b	95	78.822	Maylandia_zebra
ENSSMAG00000020467	prdm1b	93	82.562	ENSMMOG00000013458	prdm1b	96	82.192	Mola_mola
ENSSMAG00000020467	prdm1b	91	38.482	ENSMALG00000000462	-	57	56.442	Monopterus_albus
ENSSMAG00000020467	prdm1b	97	77.087	ENSMALG00000011410	prdm1b	99	77.250	Monopterus_albus
ENSSMAG00000020467	prdm1b	55	56.442	ENSONIG00000014709	-	57	56.442	Oreochromis_niloticus
ENSSMAG00000020467	prdm1b	90	91.525	ENSONIG00000013583	prdm1b	92	88.136	Oreochromis_niloticus
ENSSMAG00000020467	prdm1b	100	67.628	ENSORLG00000010025	prdm1b	99	67.601	Oryzias_latipes
ENSSMAG00000020467	prdm1b	91	69.110	ENSORLG00015009022	prdm1b	92	68.697	Oryzias_latipes_hsok
ENSSMAG00000020467	prdm1b	84	72.376	ENSPKIG00000022335	prdm1b	86	76.730	Paramormyrops_kingsleyae
ENSSMAG00000020467	prdm1b	88	71.101	ENSPFOG00000003103	prdm1b	81	84.314	Poecilia_formosa
ENSSMAG00000020467	prdm1b	100	78.254	ENSPLAG00000018491	prdm1b	99	77.901	Poecilia_latipinna
ENSSMAG00000020467	prdm1b	100	79.470	ENSPMEG00000007869	prdm1b	100	79.140	Poecilia_mexicana
ENSSMAG00000020467	prdm1b	99	78.069	ENSPREG00000011327	prdm1b	99	77.725	Poecilia_reticulata
ENSSMAG00000020467	prdm1b	69	70.000	ENSPVAG00000011732	PRDM1	69	58.721	Pteropus_vampyrus
ENSSMAG00000020467	prdm1b	92	63.134	ENSSFOG00015021896	prdm1b	93	63.134	Scleropages_formosus
ENSSMAG00000020467	prdm1b	57	75.510	ENSSDUG00000000524	-	58	56.970	Seriola_dumerili
ENSSMAG00000020467	prdm1b	100	88.198	ENSSDUG00000020610	prdm1b	100	88.198	Seriola_dumerili
ENSSMAG00000020467	prdm1b	100	88.072	ENSSLDG00000021973	prdm1b	100	88.072	Seriola_lalandi_dorsalis
ENSSMAG00000020467	prdm1b	57	75.510	ENSSLDG00000001957	-	58	56.970	Seriola_lalandi_dorsalis
ENSSMAG00000020467	prdm1b	100	79.040	ENSSPAG00000000803	prdm1b	100	79.840	Stegastes_partitus
ENSSMAG00000020467	prdm1b	92	40.293	ENSSPAG00000009830	-	91	42.424	Stegastes_partitus
ENSSMAG00000020467	prdm1b	96	78.324	ENSXCOG00000018920	prdm1b	98	78.179	Xiphophorus_couchianus
ENSSMAG00000020467	prdm1b	100	72.629	ENSXMAG00000016765	prdm1b	95	74.536	Xiphophorus_maculatus