EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSMAG00000020547 (Gene tree)
Gene ID: -
Gene Symbol: cpsf1
Alias: wu:fb24c01
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Plus strand
Length: 18748 bases
Position: chr7:23758756-23777503
Accession: ZDB-GENE-040709-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000033591	CPSF_A	PF03178.15	8.4e-91	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000034016	-	7067	-	ENSSMAP00000033591	1470 (aa)	-	A0A2U9BM21

Gene Model

Click here to download ENSSMAG00000020547's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000020547's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000020547	cpsf1	100	78.011	ENSG00000071894	CPSF1	100	80.556	Homo_sapiens
ENSSMAG00000020547	cpsf1	100	93.754	ENSAPOG00000019621	cpsf1	100	93.890	Acanthochromis_polyacanthus
ENSSMAG00000020547	cpsf1	97	77.057	ENSAMEG00000005557	CPSF1	99	76.918	Ailuropoda_melanoleuca
ENSSMAG00000020547	cpsf1	100	88.949	ENSACIG00000006112	cpsf1	100	88.814	Amphilophus_citrinellus
ENSSMAG00000020547	cpsf1	100	90.669	ENSAOCG00000007120	cpsf1	100	90.534	Amphiprion_ocellaris
ENSSMAG00000020547	cpsf1	100	91.684	ENSAPEG00000005755	cpsf1	100	91.481	Amphiprion_percula
ENSSMAG00000020547	cpsf1	100	93.153	ENSATEG00000011097	cpsf1	100	92.881	Anabas_testudineus
ENSSMAG00000020547	cpsf1	93	73.638	ENSACAG00000009655	CPSF1	100	73.328	Anolis_carolinensis
ENSSMAG00000020547	cpsf1	100	77.943	ENSANAG00000036514	CPSF1	100	77.808	Aotus_nancymaae
ENSSMAG00000020547	cpsf1	99	92.603	ENSACLG00000012231	cpsf1	99	91.955	Astatotilapia_calliptera
ENSSMAG00000020547	cpsf1	100	78.905	ENSAMXG00000008485	cpsf1	100	78.431	Astyanax_mexicanus
ENSSMAG00000020547	cpsf1	100	76.611	ENSBTAG00000008355	CPSF1	100	77.388	Bos_taurus
ENSSMAG00000020547	cpsf1	100	32.168	WBGene00022301	cpsf-1	99	41.243	Caenorhabditis_elegans
ENSSMAG00000020547	cpsf1	100	77.943	ENSCJAG00000021421	CPSF1	100	77.808	Callithrix_jacchus
ENSSMAG00000020547	cpsf1	97	78.866	ENSCAFG00000001600	CPSF1	100	78.040	Canis_familiaris
ENSSMAG00000020547	cpsf1	100	78.378	ENSCAFG00020020821	CPSF1	100	78.176	Canis_lupus_dingo
ENSSMAG00000020547	cpsf1	100	74.001	ENSCHIG00000015833	CPSF1	100	73.866	Capra_hircus
ENSSMAG00000020547	cpsf1	100	78.349	ENSTSYG00000028560	CPSF1	100	81.481	Carlito_syrichta
ENSSMAG00000020547	cpsf1	97	77.498	ENSCAPG00000014921	CPSF1	99	77.428	Cavia_aperea
ENSSMAG00000020547	cpsf1	100	76.928	ENSCPOG00000011448	CPSF1	100	76.861	Cavia_porcellus
ENSSMAG00000020547	cpsf1	100	78.011	ENSCCAG00000037658	CPSF1	100	80.734	Cebus_capucinus
ENSSMAG00000020547	cpsf1	100	77.740	ENSCATG00000037234	CPSF1	100	80.556	Cercocebus_atys
ENSSMAG00000020547	cpsf1	100	78.334	ENSCLAG00000012166	CPSF1	100	78.199	Chinchilla_lanigera
ENSSMAG00000020547	cpsf1	100	77.876	ENSCSAG00000008502	CPSF1	100	77.673	Chlorocebus_sabaeus
ENSSMAG00000020547	cpsf1	99	79.426	ENSCPBG00000018910	CPSF1	96	79.357	Chrysemys_picta_bellii
ENSSMAG00000020547	cpsf1	96	47.509	ENSCING00000000514	-	100	47.224	Ciona_intestinalis
ENSSMAG00000020547	cpsf1	99	47.606	ENSCSAVG00000002293	-	99	51.163	Ciona_savignyi
ENSSMAG00000020547	cpsf1	98	75.173	ENSCANG00000032760	CPSF1	100	81.019	Colobus_angolensis_palliatus
ENSSMAG00000020547	cpsf1	100	77.928	ENSCGRG00001016344	Cpsf1	100	77.590	Cricetulus_griseus_chok1gshd
ENSSMAG00000020547	cpsf1	100	76.371	ENSCGRG00000003118	Cpsf1	100	76.032	Cricetulus_griseus_crigri
ENSSMAG00000020547	cpsf1	100	86.847	ENSCSEG00000013464	cpsf1	99	89.788	Cynoglossus_semilaevis
ENSSMAG00000020547	cpsf1	86	85.998	ENSCVAG00000014059	cpsf1	100	82.407	Cyprinodon_variegatus
ENSSMAG00000020547	cpsf1	100	85.995	ENSDARG00000034178	cpsf1	100	85.724	Danio_rerio
ENSSMAG00000020547	cpsf1	57	82.709	ENSDNOG00000043654	CPSF1	94	82.997	Dasypus_novemcinctus
ENSSMAG00000020547	cpsf1	97	78.346	ENSDORG00000006278	Cpsf1	99	78.136	Dipodomys_ordii
ENSSMAG00000020547	cpsf1	100	43.894	FBgn0024698	Cpsf160	100	43.490	Drosophila_melanogaster
ENSSMAG00000020547	cpsf1	81	85.906	ENSETEG00000006022	CPSF1	83	85.906	Echinops_telfairi
ENSSMAG00000020547	cpsf1	100	78.243	ENSEASG00005010774	CPSF1	100	78.243	Equus_asinus_asinus
ENSSMAG00000020547	cpsf1	100	78.108	ENSECAG00000022209	CPSF1	100	78.108	Equus_caballus
ENSSMAG00000020547	cpsf1	100	77.853	ENSEEUG00000000471	CPSF1	100	77.515	Erinaceus_europaeus
ENSSMAG00000020547	cpsf1	100	86.734	ENSELUG00000012271	cpsf1	100	85.907	Esox_lucius
ENSSMAG00000020547	cpsf1	100	78.470	ENSFDAG00000016060	CPSF1	100	78.402	Fukomys_damarensis
ENSSMAG00000020547	cpsf1	100	87.846	ENSFHEG00000016801	cpsf1	100	87.635	Fundulus_heteroclitus
ENSSMAG00000020547	cpsf1	100	87.153	ENSGMOG00000000796	cpsf1	100	86.883	Gadus_morhua
ENSSMAG00000020547	cpsf1	99	85.767	ENSGAFG00000018890	cpsf1	100	91.071	Gambusia_affinis
ENSSMAG00000020547	cpsf1	100	90.627	ENSGACG00000008703	cpsf1	100	90.223	Gasterosteus_aculeatus
ENSSMAG00000020547	cpsf1	100	76.232	ENSGAGG00000004276	CPSF1	98	79.853	Gopherus_agassizii
ENSSMAG00000020547	cpsf1	100	77.996	ENSGGOG00000016185	CPSF1	100	80.556	Gorilla_gorilla
ENSSMAG00000020547	cpsf1	100	90.680	ENSHBUG00000018900	cpsf1	100	90.680	Haplochromis_burtoni
ENSSMAG00000020547	cpsf1	100	78.402	ENSHGLG00000016139	CPSF1	100	78.334	Heterocephalus_glaber_female
ENSSMAG00000020547	cpsf1	100	78.334	ENSHGLG00100009750	CPSF1	100	78.267	Heterocephalus_glaber_male
ENSSMAG00000020547	cpsf1	100	89.274	ENSHCOG00000018509	cpsf1	100	89.341	Hippocampus_comes
ENSSMAG00000020547	cpsf1	100	82.579	ENSIPUG00000011259	cpsf1	100	82.365	Ictalurus_punctatus
ENSSMAG00000020547	cpsf1	97	77.786	ENSSTOG00000009957	CPSF1	99	77.855	Ictidomys_tridecemlineatus
ENSSMAG00000020547	cpsf1	100	78.064	ENSJJAG00000023002	Cpsf1	100	77.928	Jaculus_jaculus
ENSSMAG00000020547	cpsf1	91	94.044	ENSKMAG00000001940	cpsf1	99	94.044	Kryptolebias_marmoratus
ENSSMAG00000020547	cpsf1	100	92.323	ENSLBEG00000003601	cpsf1	100	92.255	Labrus_bergylta
ENSSMAG00000020547	cpsf1	87	78.495	ENSLACG00000000233	CPSF1	92	78.495	Latimeria_chalumnae
ENSSMAG00000020547	cpsf1	100	81.419	ENSLOCG00000008484	cpsf1	100	81.284	Lepisosteus_oculatus
ENSSMAG00000020547	cpsf1	97	77.879	ENSLAFG00000022601	CPSF1	100	77.879	Loxodonta_africana
ENSSMAG00000020547	cpsf1	100	77.808	ENSMFAG00000037013	CPSF1	100	80.556	Macaca_fascicularis
ENSSMAG00000020547	cpsf1	100	77.808	ENSMMUG00000007380	CPSF1	100	80.556	Macaca_mulatta
ENSSMAG00000020547	cpsf1	97	78.182	ENSMNEG00000043564	CPSF1	100	80.556	Macaca_nemestrina
ENSSMAG00000020547	cpsf1	100	77.808	ENSMLEG00000043010	CPSF1	100	80.556	Mandrillus_leucophaeus
ENSSMAG00000020547	cpsf1	100	93.279	ENSMAMG00000003803	cpsf1	100	93.279	Mastacembelus_armatus
ENSSMAG00000020547	cpsf1	100	87.143	ENSMZEG00005001168	cpsf1	100	87.143	Maylandia_zebra
ENSSMAG00000020547	cpsf1	100	77.793	ENSMAUG00000003601	Cpsf1	100	77.522	Mesocricetus_auratus
ENSSMAG00000020547	cpsf1	100	78.131	ENSMICG00000015767	CPSF1	100	78.064	Microcebus_murinus
ENSSMAG00000020547	cpsf1	100	77.793	ENSMOCG00000022758	Cpsf1	100	77.522	Microtus_ochrogaster
ENSSMAG00000020547	cpsf1	100	89.641	ENSMMOG00000021245	cpsf1	100	89.641	Mola_mola
ENSSMAG00000020547	cpsf1	100	78.716	ENSMODG00000010755	CPSF1	100	78.514	Monodelphis_domestica
ENSSMAG00000020547	cpsf1	100	92.872	ENSMALG00000020545	cpsf1	100	92.668	Monopterus_albus
ENSSMAG00000020547	cpsf1	100	78.131	MGP_CAROLIEiJ_G0019936	Cpsf1	100	77.996	Mus_caroli
ENSSMAG00000020547	cpsf1	100	78.131	ENSMUSG00000034022	Cpsf1	100	77.996	Mus_musculus
ENSSMAG00000020547	cpsf1	100	78.131	MGP_PahariEiJ_G0019946	Cpsf1	100	77.996	Mus_pahari
ENSSMAG00000020547	cpsf1	100	78.199	MGP_SPRETEiJ_G0020839	Cpsf1	100	78.064	Mus_spretus
ENSSMAG00000020547	cpsf1	94	78.989	ENSMPUG00000006419	CPSF1	93	78.917	Mustela_putorius_furo
ENSSMAG00000020547	cpsf1	100	77.861	ENSNGAG00000022460	Cpsf1	100	77.725	Nannospalax_galili
ENSSMAG00000020547	cpsf1	100	84.500	ENSNBRG00000000813	cpsf1	97	90.698	Neolamprologus_brichardi
ENSSMAG00000020547	cpsf1	86	69.820	ENSNLEG00000010633	-	100	80.556	Nomascus_leucogenys
ENSSMAG00000020547	cpsf1	83	87.791	ENSMEUG00000014922	CPSF1	85	87.791	Notamacropus_eugenii
ENSSMAG00000020547	cpsf1	61	90.000	ENSOPRG00000004693	-	70	90.000	Ochotona_princeps
ENSSMAG00000020547	cpsf1	100	78.402	ENSODEG00000013995	CPSF1	100	78.334	Octodon_degus
ENSSMAG00000020547	cpsf1	100	90.928	ENSONIG00000007676	cpsf1	100	90.318	Oreochromis_niloticus
ENSSMAG00000020547	cpsf1	59	78.571	ENSOANG00000010716	CPSF1	89	78.571	Ornithorhynchus_anatinus
ENSSMAG00000020547	cpsf1	100	89.613	ENSORLG00000013544	cpsf1	100	89.274	Oryzias_latipes
ENSSMAG00000020547	cpsf1	100	89.681	ENSORLG00020021693	cpsf1	100	89.341	Oryzias_latipes_hni
ENSSMAG00000020547	cpsf1	100	89.681	ENSORLG00015009979	cpsf1	100	89.409	Oryzias_latipes_hsok
ENSSMAG00000020547	cpsf1	100	89.349	ENSOMEG00000011849	cpsf1	100	88.942	Oryzias_melastigma
ENSSMAG00000020547	cpsf1	100	78.349	ENSOGAG00000000315	CPSF1	100	78.214	Otolemur_garnettii
ENSSMAG00000020547	cpsf1	100	78.011	ENSPPAG00000019280	CPSF1	100	81.900	Pan_paniscus
ENSSMAG00000020547	cpsf1	100	76.713	ENSPTRG00000051253	-	100	81.900	Pan_troglodytes
ENSSMAG00000020547	cpsf1	100	78.011	ENSPTRG00000049288	-	100	81.900	Pan_troglodytes
ENSSMAG00000020547	cpsf1	97	78.182	ENSPANG00000015005	CPSF1	100	80.556	Papio_anubis
ENSSMAG00000020547	cpsf1	100	85.037	ENSPKIG00000002582	cpsf1	100	85.328	Paramormyrops_kingsleyae
ENSSMAG00000020547	cpsf1	100	78.784	ENSPCIG00000009035	CPSF1	100	78.581	Phascolarctos_cinereus
ENSSMAG00000020547	cpsf1	100	89.810	ENSPFOG00000012870	cpsf1	100	89.606	Poecilia_formosa
ENSSMAG00000020547	cpsf1	100	90.285	ENSPREG00000016307	cpsf1	100	90.149	Poecilia_reticulata
ENSSMAG00000020547	cpsf1	100	70.994	ENSPPYG00000018973	CPSF1	100	71.062	Pongo_abelii
ENSSMAG00000020547	cpsf1	91	85.511	ENSPCAG00000011541	CPSF1	94	85.511	Procavia_capensis
ENSSMAG00000020547	cpsf1	100	74.899	ENSPCOG00000020001	CPSF1	100	80.556	Propithecus_coquereli
ENSSMAG00000020547	cpsf1	91	88.571	ENSPVAG00000006761	CPSF1	91	88.571	Pteropus_vampyrus
ENSSMAG00000020547	cpsf1	100	92.809	ENSPNYG00000004906	cpsf1	100	92.198	Pundamilia_nyererei
ENSSMAG00000020547	cpsf1	100	81.738	ENSPNAG00000024395	cpsf1	100	81.127	Pygocentrus_nattereri
ENSSMAG00000020547	cpsf1	100	78.102	ENSRNOG00000030705	Cpsf1	100	77.966	Rattus_norvegicus
ENSSMAG00000020547	cpsf1	100	77.876	ENSRBIG00000044907	CPSF1	100	81.019	Rhinopithecus_bieti
ENSSMAG00000020547	cpsf1	100	77.943	ENSRROG00000044861	CPSF1	100	81.019	Rhinopithecus_roxellana
ENSSMAG00000020547	cpsf1	97	78.252	ENSSBOG00000027177	CPSF1	99	78.221	Saimiri_boliviensis_boliviensis
ENSSMAG00000020547	cpsf1	100	78.649	ENSSHAG00000006500	CPSF1	100	78.581	Sarcophilus_harrisii
ENSSMAG00000020547	cpsf1	100	83.694	ENSSFOG00015004606	cpsf1	100	86.133	Scleropages_formosus
ENSSMAG00000020547	cpsf1	100	91.502	ENSSDUG00000001100	cpsf1	100	91.434	Seriola_dumerili
ENSSMAG00000020547	cpsf1	100	91.638	ENSSLDG00000003619	cpsf1	100	91.706	Seriola_lalandi_dorsalis
ENSSMAG00000020547	cpsf1	89	75.098	ENSSARG00000003643	CPSF1	92	75.020	Sorex_araneus
ENSSMAG00000020547	cpsf1	96	80.296	ENSSPUG00000014396	CPSF1	99	80.211	Sphenodon_punctatus
ENSSMAG00000020547	cpsf1	100	93.886	ENSSPAG00000005349	cpsf1	100	93.954	Stegastes_partitus
ENSSMAG00000020547	cpsf1	100	77.500	ENSSSCG00000005906	CPSF1	100	77.365	Sus_scrofa
ENSSMAG00000020547	cpsf1	96	90.704	ENSTRUG00000013134	cpsf1	99	90.352	Takifugu_rubripes
ENSSMAG00000020547	cpsf1	100	88.814	ENSTNIG00000014027	cpsf1	100	88.544	Tetraodon_nigroviridis
ENSSMAG00000020547	cpsf1	78	71.195	ENSTBEG00000001756	CPSF1	91	70.213	Tupaia_belangeri
ENSSMAG00000020547	cpsf1	90	84.165	ENSTTRG00000001937	CPSF1	90	84.337	Tursiops_truncatus
ENSSMAG00000020547	cpsf1	97	78.507	ENSUAMG00000006476	CPSF1	98	78.367	Ursus_americanus
ENSSMAG00000020547	cpsf1	100	88.027	ENSXCOG00000003608	cpsf1	100	87.823	Xiphophorus_couchianus
ENSSMAG00000020547	cpsf1	100	87.152	ENSXMAG00000005798	cpsf1	100	87.016	Xiphophorus_maculatus