EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSMAG00000020978 (Gene tree)
Gene ID: -
Gene Symbol: rpusd4
Alias: si:ch211-14i3.3|zgc:92006
Full Name: RNA pseudouridine synthase D4
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Minus strand
Length: 7134 bases
Position: chr6:12699207-12706340
Accession: ZDB-GENE-040801-238
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000034287	PseudoU_synth_2	PF00849.22	3.1e-30	1	1
ENSSMAP00000034288	PseudoU_synth_2	PF00849.22	3.3e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000034728	-	1140	-	ENSSMAP00000034288	379 (aa)	-	-
ENSSMAT00000034727	-	1122	-	ENSSMAP00000034287	373 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000020978's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000020978's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000020978	rpusd4	85	50.459	ENSG00000165526	RPUSD4	89	49.267	Homo_sapiens
ENSSMAG00000020978	rpusd4	100	72.751	ENSAPOG00000011024	rpusd4	98	72.751	Acanthochromis_polyacanthus
ENSSMAG00000020978	rpusd4	60	54.444	ENSAMEG00000005953	-	95	51.000	Ailuropoda_melanoleuca
ENSSMAG00000020978	rpusd4	88	50.000	ENSAMEG00000000127	-	89	50.000	Ailuropoda_melanoleuca
ENSSMAG00000020978	rpusd4	86	75.767	ENSACIG00000003533	rpusd4	96	75.767	Amphilophus_citrinellus
ENSSMAG00000020978	rpusd4	99	72.679	ENSAOCG00000015409	rpusd4	97	72.093	Amphiprion_ocellaris
ENSSMAG00000020978	rpusd4	99	72.679	ENSAPEG00000018935	rpusd4	97	72.093	Amphiprion_percula
ENSSMAG00000020978	rpusd4	100	75.773	ENSATEG00000008059	rpusd4	97	75.773	Anabas_testudineus
ENSSMAG00000020978	rpusd4	74	53.763	ENSAPLG00000013250	RPUSD4	96	53.710	Anas_platyrhynchos
ENSSMAG00000020978	rpusd4	88	51.045	ENSACAG00000000189	RPUSD4	92	50.292	Anolis_carolinensis
ENSSMAG00000020978	rpusd4	88	48.094	ENSANAG00000024050	RPUSD4	90	48.094	Aotus_nancymaae
ENSSMAG00000020978	rpusd4	99	71.618	ENSACLG00000020996	rpusd4	99	71.429	Astatotilapia_calliptera
ENSSMAG00000020978	rpusd4	87	63.174	ENSAMXG00000031479	rpusd4	95	62.722	Astyanax_mexicanus
ENSSMAG00000020978	rpusd4	87	51.368	ENSBTAG00000020900	RPUSD4	88	51.343	Bos_taurus
ENSSMAG00000020978	rpusd4	88	48.529	ENSCJAG00000042850	RPUSD4	84	48.529	Callithrix_jacchus
ENSSMAG00000020978	rpusd4	92	50.000	ENSCAFG00000010488	RPUSD4	92	50.000	Canis_familiaris
ENSSMAG00000020978	rpusd4	92	50.000	ENSCAFG00020010621	RPUSD4	92	50.000	Canis_lupus_dingo
ENSSMAG00000020978	rpusd4	85	51.553	ENSCHIG00000009975	RPUSD4	87	51.343	Capra_hircus
ENSSMAG00000020978	rpusd4	88	49.850	ENSTSYG00000008456	RPUSD4	90	48.837	Carlito_syrichta
ENSSMAG00000020978	rpusd4	64	49.796	ENSCAPG00000006040	RPUSD4	93	49.796	Cavia_aperea
ENSSMAG00000020978	rpusd4	89	51.613	ENSCPOG00000014971	RPUSD4	89	51.613	Cavia_porcellus
ENSSMAG00000020978	rpusd4	88	48.824	ENSCCAG00000027838	RPUSD4	90	48.824	Cebus_capucinus
ENSSMAG00000020978	rpusd4	88	48.094	ENSCATG00000041570	RPUSD4	89	48.094	Cercocebus_atys
ENSSMAG00000020978	rpusd4	88	51.176	ENSCLAG00000016553	RPUSD4	89	51.176	Chinchilla_lanigera
ENSSMAG00000020978	rpusd4	87	49.697	ENSCSAG00000002274	RPUSD4	89	48.680	Chlorocebus_sabaeus
ENSSMAG00000020978	rpusd4	71	52.434	ENSCHOG00000010249	RPUSD4	95	51.825	Choloepus_hoffmanni
ENSSMAG00000020978	rpusd4	75	55.282	ENSCPBG00000011175	RPUSD4	99	54.671	Chrysemys_picta_bellii
ENSSMAG00000020978	rpusd4	84	37.764	ENSCSAVG00000000872	-	63	37.764	Ciona_savignyi
ENSSMAG00000020978	rpusd4	90	47.839	ENSCANG00000039684	RPUSD4	91	47.839	Colobus_angolensis_palliatus
ENSSMAG00000020978	rpusd4	97	48.387	ENSCGRG00001024141	Rpusd4	95	48.387	Cricetulus_griseus_chok1gshd
ENSSMAG00000020978	rpusd4	97	48.387	ENSCGRG00000014415	Rpusd4	95	48.387	Cricetulus_griseus_crigri
ENSSMAG00000020978	rpusd4	51	67.725	ENSCSEG00000006462	-	85	67.368	Cynoglossus_semilaevis
ENSSMAG00000020978	rpusd4	100	64.975	ENSCVAG00000008761	rpusd4	99	65.228	Cyprinodon_variegatus
ENSSMAG00000020978	rpusd4	100	64.721	ENSCVAG00000000392	rpusd4	99	69.209	Cyprinodon_variegatus
ENSSMAG00000020978	rpusd4	88	61.078	ENSDARG00000012674	rpusd4	93	61.078	Danio_rerio
ENSSMAG00000020978	rpusd4	87	50.456	ENSDNOG00000020026	RPUSD4	88	50.148	Dasypus_novemcinctus
ENSSMAG00000020978	rpusd4	88	49.701	ENSDORG00000016717	Rpusd4	89	49.267	Dipodomys_ordii
ENSSMAG00000020978	rpusd4	88	51.765	ENSETEG00000013953	RPUSD4	90	51.765	Echinops_telfairi
ENSSMAG00000020978	rpusd4	87	50.909	ENSEASG00005022982	RPUSD4	88	50.445	Equus_asinus_asinus
ENSSMAG00000020978	rpusd4	87	51.368	ENSECAG00000000557	RPUSD4	88	50.893	Equus_caballus
ENSSMAG00000020978	rpusd4	68	57.310	ENSEEUG00000014036	RPUSD4	69	56.497	Erinaceus_europaeus
ENSSMAG00000020978	rpusd4	95	62.205	ENSELUG00000008075	rpusd4	99	62.205	Esox_lucius
ENSSMAG00000020978	rpusd4	88	50.737	ENSFCAG00000029789	RPUSD4	88	50.737	Felis_catus
ENSSMAG00000020978	rpusd4	88	50.453	ENSFALG00000005171	RPUSD4	97	50.148	Ficedula_albicollis
ENSSMAG00000020978	rpusd4	92	49.030	ENSFDAG00000014307	RPUSD4	95	49.030	Fukomys_damarensis
ENSSMAG00000020978	rpusd4	100	67.692	ENSFHEG00000004329	rpusd4	100	67.692	Fundulus_heteroclitus
ENSSMAG00000020978	rpusd4	84	67.085	ENSGMOG00000017726	rpusd4	97	66.463	Gadus_morhua
ENSSMAG00000020978	rpusd4	74	54.839	ENSGALG00000024326	RPUSD4	97	48.718	Gallus_gallus
ENSSMAG00000020978	rpusd4	100	65.316	ENSGAFG00000021559	rpusd4	100	65.316	Gambusia_affinis
ENSSMAG00000020978	rpusd4	88	75.076	ENSGACG00000001657	rpusd4	97	78.700	Gasterosteus_aculeatus
ENSSMAG00000020978	rpusd4	88	51.205	ENSGAGG00000000132	RPUSD4	93	50.742	Gopherus_agassizii
ENSSMAG00000020978	rpusd4	85	50.765	ENSGGOG00000016494	RPUSD4	89	49.706	Gorilla_gorilla
ENSSMAG00000020978	rpusd4	99	71.088	ENSHBUG00000022838	rpusd4	99	70.909	Haplochromis_burtoni
ENSSMAG00000020978	rpusd4	87	50.303	ENSHGLG00000002285	RPUSD4	89	49.267	Heterocephalus_glaber_female
ENSSMAG00000020978	rpusd4	87	50.303	ENSHGLG00100006385	RPUSD4	89	49.267	Heterocephalus_glaber_male
ENSSMAG00000020978	rpusd4	99	68.602	ENSHCOG00000006612	rpusd4	99	68.123	Hippocampus_comes
ENSSMAG00000020978	rpusd4	88	60.360	ENSIPUG00000023879	rusd4	87	59.882	Ictalurus_punctatus
ENSSMAG00000020978	rpusd4	97	48.919	ENSSTOG00000025280	RPUSD4	98	48.919	Ictidomys_tridecemlineatus
ENSSMAG00000020978	rpusd4	91	50.142	ENSJJAG00000018673	Rpusd4	94	50.142	Jaculus_jaculus
ENSSMAG00000020978	rpusd4	99	71.658	ENSKMAG00000021805	rpusd4	100	71.279	Kryptolebias_marmoratus
ENSSMAG00000020978	rpusd4	97	69.018	ENSLBEG00000020394	rpusd4	93	77.273	Labrus_bergylta
ENSSMAG00000020978	rpusd4	85	52.484	ENSLACG00000011028	RPUSD4	90	50.000	Latimeria_chalumnae
ENSSMAG00000020978	rpusd4	88	44.540	ENSLOCG00000003124	rpusd4	94	44.350	Lepisosteus_oculatus
ENSSMAG00000020978	rpusd4	87	50.760	ENSLAFG00000005211	RPUSD4	100	44.068	Loxodonta_africana
ENSSMAG00000020978	rpusd4	87	49.697	ENSMFAG00000039513	RPUSD4	89	48.680	Macaca_fascicularis
ENSSMAG00000020978	rpusd4	87	49.394	ENSMMUG00000007933	RPUSD4	89	48.387	Macaca_mulatta
ENSSMAG00000020978	rpusd4	87	50.000	ENSMNEG00000027414	RPUSD4	89	48.974	Macaca_nemestrina
ENSSMAG00000020978	rpusd4	87	49.394	ENSMLEG00000042461	RPUSD4	89	48.387	Mandrillus_leucophaeus
ENSSMAG00000020978	rpusd4	100	72.081	ENSMAMG00000023839	rpusd4	100	72.081	Mastacembelus_armatus
ENSSMAG00000020978	rpusd4	99	71.618	ENSMZEG00005011999	rpusd4	99	71.429	Maylandia_zebra
ENSSMAG00000020978	rpusd4	74	52.297	ENSMGAG00000000840	RPUSD4	88	52.448	Meleagris_gallopavo
ENSSMAG00000020978	rpusd4	97	48.387	ENSMAUG00000010280	Rpusd4	95	48.387	Mesocricetus_auratus
ENSSMAG00000020978	rpusd4	88	50.729	ENSMICG00000015979	RPUSD4	90	54.426	Microcebus_murinus
ENSSMAG00000020978	rpusd4	89	49.563	ENSMOCG00000000661	Rpusd4	90	49.563	Microtus_ochrogaster
ENSSMAG00000020978	rpusd4	81	76.471	ENSMMOG00000021731	rpusd4	92	76.471	Mola_mola
ENSSMAG00000020978	rpusd4	86	52.000	ENSMODG00000004521	RPUSD4	82	52.000	Monodelphis_domestica
ENSSMAG00000020978	rpusd4	82	80.064	ENSMALG00000005839	rpusd4	96	79.180	Monopterus_albus
ENSSMAG00000020978	rpusd4	90	50.144	MGP_CAROLIEiJ_G0031954	Rpusd4	91	50.144	Mus_caroli
ENSSMAG00000020978	rpusd4	92	48.641	ENSMUSG00000032044	Rpusd4	96	48.641	Mus_musculus
ENSSMAG00000020978	rpusd4	90	50.144	MGP_PahariEiJ_G0014819	Rpusd4	91	50.144	Mus_pahari
ENSSMAG00000020978	rpusd4	90	50.144	MGP_SPRETEiJ_G0033078	Rpusd4	91	50.144	Mus_spretus
ENSSMAG00000020978	rpusd4	88	50.147	ENSMPUG00000006608	RPUSD4	89	50.147	Mustela_putorius_furo
ENSSMAG00000020978	rpusd4	67	52.326	ENSMLUG00000029348	-	99	52.326	Myotis_lucifugus
ENSSMAG00000020978	rpusd4	88	51.026	ENSMLUG00000017328	-	89	51.026	Myotis_lucifugus
ENSSMAG00000020978	rpusd4	96	51.475	ENSNGAG00000020847	Rpusd4	96	51.475	Nannospalax_galili
ENSSMAG00000020978	rpusd4	85	77.950	ENSNBRG00000005207	rpusd4	94	77.950	Neolamprologus_brichardi
ENSSMAG00000020978	rpusd4	90	48.127	ENSNLEG00000007465	RPUSD4	91	48.127	Nomascus_leucogenys
ENSSMAG00000020978	rpusd4	88	52.493	ENSMEUG00000004370	RPUSD4	90	52.493	Notamacropus_eugenii
ENSSMAG00000020978	rpusd4	88	49.706	ENSODEG00000004577	RPUSD4	89	49.706	Octodon_degus
ENSSMAG00000020978	rpusd4	99	72.414	ENSONIG00000018879	rpusd4	99	72.208	Oreochromis_niloticus
ENSSMAG00000020978	rpusd4	77	50.338	ENSOANG00000007247	RPUSD4	95	50.331	Ornithorhynchus_anatinus
ENSSMAG00000020978	rpusd4	94	49.315	ENSOCUG00000017039	RPUSD4	96	49.315	Oryctolagus_cuniculus
ENSSMAG00000020978	rpusd4	94	67.409	ENSORLG00000002750	rpusd4	96	67.409	Oryzias_latipes
ENSSMAG00000020978	rpusd4	92	68.056	ENSORLG00020002044	rpusd4	97	64.103	Oryzias_latipes_hni
ENSSMAG00000020978	rpusd4	92	67.688	ENSORLG00015020034	rpusd4	90	67.688	Oryzias_latipes_hsok
ENSSMAG00000020978	rpusd4	99	65.285	ENSOMEG00000004861	rpusd4	96	65.285	Oryzias_melastigma
ENSSMAG00000020978	rpusd4	80	53.571	ENSOGAG00000008922	RPUSD4	90	50.291	Otolemur_garnettii
ENSSMAG00000020978	rpusd4	85	51.553	ENSOARG00000012238	RPUSD4	87	51.045	Ovis_aries
ENSSMAG00000020978	rpusd4	85	50.459	ENSPPAG00000042883	RPUSD4	83	49.267	Pan_paniscus
ENSSMAG00000020978	rpusd4	88	50.442	ENSPPRG00000003081	RPUSD4	88	50.442	Panthera_pardus
ENSSMAG00000020978	rpusd4	88	50.442	ENSPTIG00000012059	RPUSD4	87	52.117	Panthera_tigris_altaica
ENSSMAG00000020978	rpusd4	85	50.459	ENSPTRG00000004454	RPUSD4	89	49.267	Pan_troglodytes
ENSSMAG00000020978	rpusd4	87	49.697	ENSPANG00000015040	RPUSD4	89	48.680	Papio_anubis
ENSSMAG00000020978	rpusd4	87	61.162	ENSPKIG00000023986	rpusd4	85	60.360	Paramormyrops_kingsleyae
ENSSMAG00000020978	rpusd4	77	54.762	ENSPSIG00000014268	RPUSD4	93	54.515	Pelodiscus_sinensis
ENSSMAG00000020978	rpusd4	86	70.846	ENSPMGG00000002806	rpusd4	92	70.336	Periophthalmus_magnuspinnatus
ENSSMAG00000020978	rpusd4	90	44.126	ENSPEMG00000000278	Rpusd4	91	44.126	Peromyscus_maniculatus_bairdii
ENSSMAG00000020978	rpusd4	81	40.708	ENSPMAG00000008183	rpusd4	98	40.708	Petromyzon_marinus
ENSSMAG00000020978	rpusd4	88	52.507	ENSPCIG00000010212	RPUSD4	91	52.507	Phascolarctos_cinereus
ENSSMAG00000020978	rpusd4	94	66.845	ENSPFOG00000019030	rpusd4	98	66.845	Poecilia_formosa
ENSSMAG00000020978	rpusd4	100	64.899	ENSPLAG00000016848	rpusd4	100	64.899	Poecilia_latipinna
ENSSMAG00000020978	rpusd4	100	64.646	ENSPMEG00000017534	rpusd4	100	64.646	Poecilia_mexicana
ENSSMAG00000020978	rpusd4	99	64.508	ENSPREG00000005689	rpusd4	99	64.508	Poecilia_reticulata
ENSSMAG00000020978	rpusd4	88	48.094	ENSPPYG00000004043	RPUSD4	89	48.094	Pongo_abelii
ENSSMAG00000020978	rpusd4	70	53.371	ENSPCAG00000000753	RPUSD4	72	53.371	Procavia_capensis
ENSSMAG00000020978	rpusd4	89	47.953	ENSPCOG00000020694	RPUSD4	91	47.953	Propithecus_coquereli
ENSSMAG00000020978	rpusd4	87	51.672	ENSPVAG00000000988	RPUSD4	90	50.588	Pteropus_vampyrus
ENSSMAG00000020978	rpusd4	99	70.557	ENSPNYG00000009652	rpusd4	99	70.390	Pundamilia_nyererei
ENSSMAG00000020978	rpusd4	87	62.385	ENSPNAG00000012264	rpusd4	88	61.862	Pygocentrus_nattereri
ENSSMAG00000020978	rpusd4	90	50.720	ENSRNOG00000011567	Rpusd4	91	50.720	Rattus_norvegicus
ENSSMAG00000020978	rpusd4	92	47.989	ENSRBIG00000034842	RPUSD4	94	47.075	Rhinopithecus_bieti
ENSSMAG00000020978	rpusd4	92	47.989	ENSRROG00000039753	RPUSD4	94	47.075	Rhinopithecus_roxellana
ENSSMAG00000020978	rpusd4	88	48.503	ENSSBOG00000030413	RPUSD4	90	48.094	Saimiri_boliviensis_boliviensis
ENSSMAG00000020978	rpusd4	80	51.948	ENSSHAG00000008304	RPUSD4	100	51.948	Sarcophilus_harrisii
ENSSMAG00000020978	rpusd4	86	59.517	ENSSFOG00015006203	rpusd4	91	59.347	Scleropages_formosus
ENSSMAG00000020978	rpusd4	99	80.902	ENSSDUG00000013399	rpusd4	100	80.902	Seriola_dumerili
ENSSMAG00000020978	rpusd4	99	81.301	ENSSLDG00000023507	rpusd4	100	80.902	Seriola_lalandi_dorsalis
ENSSMAG00000020978	rpusd4	78	55.705	ENSSPUG00000001401	RPUSD4	92	52.199	Sphenodon_punctatus
ENSSMAG00000020978	rpusd4	100	70.513	ENSSPAG00000012163	rpusd4	100	70.513	Stegastes_partitus
ENSSMAG00000020978	rpusd4	88	50.746	ENSSSCG00000015233	RPUSD4	90	50.000	Sus_scrofa
ENSSMAG00000020978	rpusd4	79	53.378	ENSTGUG00000000773	RPUSD4	99	53.333	Taeniopygia_guttata
ENSSMAG00000020978	rpusd4	98	69.272	ENSTRUG00000012283	rpusd4	99	67.969	Takifugu_rubripes
ENSSMAG00000020978	rpusd4	99	66.062	ENSTNIG00000014676	rpusd4	99	66.062	Tetraodon_nigroviridis
ENSSMAG00000020978	rpusd4	88	51.343	ENSTTRG00000001555	RPUSD4	90	50.877	Tursiops_truncatus
ENSSMAG00000020978	rpusd4	88	50.877	ENSUMAG00000002219	RPUSD4	89	50.877	Ursus_maritimus
ENSSMAG00000020978	rpusd4	64	50.000	ENSVPAG00000001066	RPUSD4	88	50.000	Vicugna_pacos
ENSSMAG00000020978	rpusd4	92	50.000	ENSVVUG00000020101	RPUSD4	92	50.000	Vulpes_vulpes
ENSSMAG00000020978	rpusd4	100	65.736	ENSXCOG00000004676	rpusd4	100	65.736	Xiphophorus_couchianus
ENSSMAG00000020978	rpusd4	100	65.570	ENSXMAG00000023351	rpusd4	100	65.570	Xiphophorus_maculatus