EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSMAG00000021018 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: -
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Minus strand
Length: 14937 bases
Position: chr12:8012539-8027475
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000034355	UPF1_Zn_bind	PF09416.10	1e-74	1	1
ENSSMAP00000034355	ResIII	PF04851.15	3.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000034795	-	7075	-	ENSSMAP00000034355	1102 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000021018's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000021018's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSMAG00000021018	-	100	91.226	ENSSMAG00000005055	upf1	100	91.853

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000021018	-	100	92.424	ENSG00000005007	UPF1	100	92.424	Homo_sapiens
ENSSMAG00000021018	-	100	99.093	ENSAPOG00000010916	-	100	99.093	Acanthochromis_polyacanthus
ENSSMAG00000021018	-	100	93.044	ENSAPOG00000023773	upf1	100	92.927	Acanthochromis_polyacanthus
ENSSMAG00000021018	-	100	92.014	ENSAMEG00000011474	UPF1	100	92.014	Ailuropoda_melanoleuca
ENSSMAG00000021018	-	93	98.152	ENSACIG00000010985	-	100	98.152	Amphilophus_citrinellus
ENSSMAG00000021018	-	100	93.376	ENSACIG00000019949	upf1	100	93.376	Amphilophus_citrinellus
ENSSMAG00000021018	-	100	99.274	ENSAOCG00000006352	-	100	99.274	Amphiprion_ocellaris
ENSSMAG00000021018	-	100	92.559	ENSAOCG00000018519	upf1	100	93.017	Amphiprion_ocellaris
ENSSMAG00000021018	-	100	99.183	ENSAPEG00000006292	-	100	99.183	Amphiprion_percula
ENSSMAG00000021018	-	100	92.559	ENSAPEG00000016344	upf1	100	93.017	Amphiprion_percula
ENSSMAG00000021018	-	100	91.111	ENSATEG00000017867	upf1	100	92.315	Anabas_testudineus
ENSSMAG00000021018	-	100	99.093	ENSATEG00000016606	-	100	99.093	Anabas_testudineus
ENSSMAG00000021018	-	95	94.034	ENSAPLG00000009175	UPF1	100	93.939	Anas_platyrhynchos
ENSSMAG00000021018	-	95	92.068	ENSANAG00000024107	UPF1	96	91.974	Aotus_nancymaae
ENSSMAG00000021018	-	100	93.103	ENSACLG00000007181	upf1	100	93.103	Astatotilapia_calliptera
ENSSMAG00000021018	-	100	98.820	ENSACLG00000022630	-	100	98.820	Astatotilapia_calliptera
ENSSMAG00000021018	-	100	95.195	ENSAMXG00000042187	upf1	100	95.376	Astyanax_mexicanus
ENSSMAG00000021018	-	100	92.028	ENSBTAG00000020922	UPF1	100	92.028	Bos_taurus
ENSSMAG00000021018	-	97	49.267	WBGene00004880	smg-2	99	49.176	Caenorhabditis_elegans
ENSSMAG00000021018	-	100	91.696	ENSCJAG00000019627	UPF1	100	91.696	Callithrix_jacchus
ENSSMAG00000021018	-	100	91.784	ENSCAFG00000014578	UPF1	100	91.784	Canis_familiaris
ENSSMAG00000021018	-	100	92.513	ENSCAFG00020012347	UPF1	100	92.513	Canis_lupus_dingo
ENSSMAG00000021018	-	100	92.761	ENSCHIG00000011018	UPF1	100	92.761	Capra_hircus
ENSSMAG00000021018	-	95	93.732	ENSTSYG00000008877	UPF1	98	93.637	Carlito_syrichta
ENSSMAG00000021018	-	96	92.958	ENSCAPG00000005758	UPF1	95	93.542	Cavia_aperea
ENSSMAG00000021018	-	100	92.812	ENSCPOG00000025463	UPF1	100	92.722	Cavia_porcellus
ENSSMAG00000021018	-	100	92.424	ENSCCAG00000032175	UPF1	100	92.424	Cebus_capucinus
ENSSMAG00000021018	-	94	94.179	ENSCATG00000040306	UPF1	97	94.084	Cercocebus_atys
ENSSMAG00000021018	-	95	93.922	ENSCLAG00000004037	UPF1	99	93.827	Chinchilla_lanigera
ENSSMAG00000021018	-	100	92.424	ENSCSAG00000005276	UPF1	100	92.424	Chlorocebus_sabaeus
ENSSMAG00000021018	-	100	92.563	ENSCPBG00000012513	UPF1	100	92.473	Chrysemys_picta_bellii
ENSSMAG00000021018	-	77	79.532	ENSCING00000021399	-	99	79.532	Ciona_intestinalis
ENSSMAG00000021018	-	99	73.160	ENSCSAVG00000006533	-	99	73.339	Ciona_savignyi
ENSSMAG00000021018	-	95	93.922	ENSCANG00000029819	UPF1	97	93.827	Colobus_angolensis_palliatus
ENSSMAG00000021018	-	100	92.301	ENSCGRG00001021067	Upf1	100	92.301	Cricetulus_griseus_chok1gshd
ENSSMAG00000021018	-	95	93.352	ENSCGRG00000013480	Upf1	98	93.257	Cricetulus_griseus_crigri
ENSSMAG00000021018	-	100	98.094	ENSCSEG00000016159	-	100	98.094	Cynoglossus_semilaevis
ENSSMAG00000021018	-	100	87.862	ENSCSEG00000017239	upf1	100	87.715	Cynoglossus_semilaevis
ENSSMAG00000021018	-	100	97.822	ENSCVAG00000010561	upf1	100	97.822	Cyprinodon_variegatus
ENSSMAG00000021018	-	100	94.560	ENSDARG00000016302	upf1	100	94.832	Danio_rerio
ENSSMAG00000021018	-	95	91.453	ENSDORG00000009984	Upf1	95	91.358	Dipodomys_ordii
ENSSMAG00000021018	-	86	71.459	FBgn0030354	Upf1	81	71.088	Drosophila_melanogaster
ENSSMAG00000021018	-	54	86.304	ENSEBUG00000010069	upf1	96	86.634	Eptatretus_burgeri
ENSSMAG00000021018	-	100	92.672	ENSEASG00005006549	UPF1	100	92.672	Equus_asinus_asinus
ENSSMAG00000021018	-	100	92.672	ENSECAG00000010639	UPF1	100	92.672	Equus_caballus
ENSSMAG00000021018	-	100	92.870	ENSELUG00000020917	upf1	100	92.419	Esox_lucius
ENSSMAG00000021018	-	100	95.672	ENSELUG00000012916	-	100	95.672	Esox_lucius
ENSSMAG00000021018	-	100	91.696	ENSFCAG00000009757	UPF1	100	91.696	Felis_catus
ENSSMAG00000021018	-	95	94.381	ENSFALG00000009312	UPF1	96	94.286	Ficedula_albicollis
ENSSMAG00000021018	-	95	93.827	ENSFDAG00000014816	UPF1	99	93.732	Fukomys_damarensis
ENSSMAG00000021018	-	86	98.548	ENSFHEG00000016276	-	96	98.548	Fundulus_heteroclitus
ENSSMAG00000021018	-	100	89.714	ENSFHEG00000006428	upf1	100	89.417	Fundulus_heteroclitus
ENSSMAG00000021018	-	100	95.328	ENSGMOG00000007541	upf1	100	95.328	Gadus_morhua
ENSSMAG00000021018	-	100	92.500	ENSGALG00000003220	UPF1	100	92.411	Gallus_gallus
ENSSMAG00000021018	-	64	92.707	ENSGAFG00000015443	-	88	92.201	Gambusia_affinis
ENSSMAG00000021018	-	100	97.913	ENSGAFG00000004831	upf1	100	97.913	Gambusia_affinis
ENSSMAG00000021018	-	100	93.069	ENSGAGG00000022217	UPF1	100	93.069	Gopherus_agassizii
ENSSMAG00000021018	-	95	94.727	ENSGGOG00000002608	UPF1	99	94.631	Gorilla_gorilla
ENSSMAG00000021018	-	90	86.207	ENSHBUG00000014694	upf1	100	86.207	Haplochromis_burtoni
ENSSMAG00000021018	-	86	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSSMAG00000021018	-	100	91.431	ENSHGLG00000010900	UPF1	100	91.431	Heterocephalus_glaber_female
ENSSMAG00000021018	-	95	92.118	ENSHGLG00100005904	UPF1	96	92.023	Heterocephalus_glaber_male
ENSSMAG00000021018	-	100	98.187	ENSHCOG00000008918	upf1	100	98.187	Hippocampus_comes
ENSSMAG00000021018	-	100	95.286	ENSIPUG00000005108	UPF1	100	95.467	Ictalurus_punctatus
ENSSMAG00000021018	-	100	92.424	ENSSTOG00000009196	UPF1	100	92.424	Ictidomys_tridecemlineatus
ENSSMAG00000021018	-	100	91.467	ENSJJAG00000023151	Upf1	100	91.467	Jaculus_jaculus
ENSSMAG00000021018	-	100	98.367	ENSKMAG00000004962	upf1	100	98.367	Kryptolebias_marmoratus
ENSSMAG00000021018	-	100	91.674	ENSLBEG00000014862	upf1	100	92.390	Labrus_bergylta
ENSSMAG00000021018	-	100	98.639	ENSLBEG00000027848	-	100	98.639	Labrus_bergylta
ENSSMAG00000021018	-	63	94.699	ENSLACG00000008482	UPF1	100	94.699	Latimeria_chalumnae
ENSSMAG00000021018	-	100	96.007	ENSLOCG00000002072	upf1	100	96.007	Lepisosteus_oculatus
ENSSMAG00000021018	-	100	91.327	ENSLAFG00000014963	UPF1	100	91.327	Loxodonta_africana
ENSSMAG00000021018	-	100	92.349	ENSMFAG00000037748	UPF1	100	92.349	Macaca_fascicularis
ENSSMAG00000021018	-	100	92.103	ENSMMUG00000023286	UPF1	100	92.103	Macaca_mulatta
ENSSMAG00000021018	-	100	92.349	ENSMNEG00000000046	UPF1	100	92.349	Macaca_nemestrina
ENSSMAG00000021018	-	95	93.922	ENSMLEG00000028404	UPF1	99	93.827	Mandrillus_leucophaeus
ENSSMAG00000021018	-	100	91.868	ENSMAMG00000006229	upf1	100	92.672	Mastacembelus_armatus
ENSSMAG00000021018	-	100	98.820	ENSMAMG00000006231	-	100	98.820	Mastacembelus_armatus
ENSSMAG00000021018	-	100	98.820	ENSMZEG00005016386	-	100	98.820	Maylandia_zebra
ENSSMAG00000021018	-	100	92.280	ENSMZEG00005003489	upf1	100	92.639	Maylandia_zebra
ENSSMAG00000021018	-	95	93.548	ENSMGAG00000004745	UPF1	100	93.454	Meleagris_gallopavo
ENSSMAG00000021018	-	95	93.352	ENSMAUG00000011398	Upf1	95	93.257	Mesocricetus_auratus
ENSSMAG00000021018	-	100	92.335	ENSMICG00000001659	UPF1	100	92.335	Microcebus_murinus
ENSSMAG00000021018	-	100	91.571	ENSMOCG00000005699	Upf1	100	91.659	Microtus_ochrogaster
ENSSMAG00000021018	-	100	92.468	ENSMMOG00000007881	upf1	100	92.426	Mola_mola
ENSSMAG00000021018	-	95	96.463	ENSMMOG00000007537	-	99	96.463	Mola_mola
ENSSMAG00000021018	-	100	91.366	ENSMODG00000003689	UPF1	100	91.454	Monodelphis_domestica
ENSSMAG00000021018	-	100	92.468	ENSMALG00000000144	upf1	100	92.650	Monopterus_albus
ENSSMAG00000021018	-	100	97.107	ENSMALG00000018100	-	100	97.107	Monopterus_albus
ENSSMAG00000021018	-	100	92.211	MGP_CAROLIEiJ_G0031142	Upf1	100	92.211	Mus_caroli
ENSSMAG00000021018	-	100	92.211	ENSMUSG00000058301	Upf1	100	92.211	Mus_musculus
ENSSMAG00000021018	-	100	92.211	MGP_PahariEiJ_G0021607	Upf1	100	92.211	Mus_pahari
ENSSMAG00000021018	-	100	92.211	MGP_SPRETEiJ_G0032260	Upf1	100	92.211	Mus_spretus
ENSSMAG00000021018	-	100	92.513	ENSMPUG00000015516	UPF1	100	92.513	Mustela_putorius_furo
ENSSMAG00000021018	-	99	92.308	ENSMLUG00000012122	UPF1	99	92.308	Myotis_lucifugus
ENSSMAG00000021018	-	100	91.150	ENSNGAG00000024107	Upf1	100	91.150	Nannospalax_galili
ENSSMAG00000021018	-	100	95.188	ENSNBRG00000022069	-	100	97.672	Neolamprologus_brichardi
ENSSMAG00000021018	-	100	91.379	ENSNBRG00000000670	upf1	100	91.379	Neolamprologus_brichardi
ENSSMAG00000021018	-	95	88.129	ENSNLEG00000006062	UPF1	99	88.034	Nomascus_leucogenys
ENSSMAG00000021018	-	83	88.477	ENSMEUG00000014146	-	83	88.281	Notamacropus_eugenii
ENSSMAG00000021018	-	95	87.440	ENSOPRG00000014018	UPF1	99	87.344	Ochotona_princeps
ENSSMAG00000021018	-	100	92.806	ENSODEG00000012426	UPF1	100	92.716	Octodon_degus
ENSSMAG00000021018	-	100	92.460	ENSONIG00000010452	upf1	100	92.819	Oreochromis_niloticus
ENSSMAG00000021018	-	100	98.820	ENSONIG00000012729	-	100	98.820	Oreochromis_niloticus
ENSSMAG00000021018	-	100	91.504	ENSOANG00000004568	UPF1	100	90.973	Ornithorhynchus_anatinus
ENSSMAG00000021018	-	100	97.913	ENSORLG00000008453	upf1	100	97.913	Oryzias_latipes
ENSSMAG00000021018	-	100	97.824	ENSORLG00020014758	upf1	100	97.824	Oryzias_latipes_hni
ENSSMAG00000021018	-	100	97.824	ENSORLG00015010165	upf1	100	97.824	Oryzias_latipes_hsok
ENSSMAG00000021018	-	100	98.094	ENSOMEG00000003665	upf1	100	98.094	Oryzias_melastigma
ENSSMAG00000021018	-	100	92.513	ENSOGAG00000012866	UPF1	100	92.513	Otolemur_garnettii
ENSSMAG00000021018	-	96	90.901	ENSOARG00000010739	UPF1	100	90.809	Ovis_aries
ENSSMAG00000021018	-	95	93.922	ENSPPAG00000043884	UPF1	96	93.827	Pan_paniscus
ENSSMAG00000021018	-	100	91.696	ENSPPRG00000023470	UPF1	100	91.696	Panthera_pardus
ENSSMAG00000021018	-	95	92.632	ENSPTIG00000010159	UPF1	99	92.536	Panthera_tigris_altaica
ENSSMAG00000021018	-	100	92.349	ENSPTRG00000010721	UPF1	100	92.349	Pan_troglodytes
ENSSMAG00000021018	-	100	92.349	ENSPANG00000008847	UPF1	100	92.349	Papio_anubis
ENSSMAG00000021018	-	91	95.337	ENSPKIG00000006069	upf1	95	96.274	Paramormyrops_kingsleyae
ENSSMAG00000021018	-	70	93.481	ENSPSIG00000009491	UPF1	100	93.351	Pelodiscus_sinensis
ENSSMAG00000021018	-	100	91.139	ENSPMGG00000017327	upf1	100	91.230	Periophthalmus_magnuspinnatus
ENSSMAG00000021018	-	100	91.571	ENSPEMG00000001085	Upf1	100	91.571	Peromyscus_maniculatus_bairdii
ENSSMAG00000021018	-	100	87.838	ENSPMAG00000001206	upf1	100	87.387	Petromyzon_marinus
ENSSMAG00000021018	-	100	92.596	ENSPCIG00000006156	UPF1	100	92.596	Phascolarctos_cinereus
ENSSMAG00000021018	-	100	98.004	ENSPLAG00000016232	-	100	98.004	Poecilia_latipinna
ENSSMAG00000021018	-	100	91.367	ENSPLAG00000018155	-	100	91.097	Poecilia_latipinna
ENSSMAG00000021018	-	100	98.094	ENSPMEG00000016319	-	100	98.094	Poecilia_mexicana
ENSSMAG00000021018	-	100	91.938	ENSPMEG00000011443	-	100	91.561	Poecilia_mexicana
ENSSMAG00000021018	-	100	97.731	ENSPREG00000011247	-	100	97.731	Poecilia_reticulata
ENSSMAG00000021018	-	100	91.741	ENSPREG00000009940	upf1	100	91.382	Poecilia_reticulata
ENSSMAG00000021018	-	100	86.837	ENSPPYG00000009752	UPF1	100	86.661	Pongo_abelii
ENSSMAG00000021018	-	75	98.653	ENSPCAG00000012962	UPF1	76	98.653	Procavia_capensis
ENSSMAG00000021018	-	100	92.185	ENSPCOG00000023813	UPF1	100	92.185	Propithecus_coquereli
ENSSMAG00000021018	-	68	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSSMAG00000021018	-	100	98.730	ENSPNYG00000016731	-	100	98.730	Pundamilia_nyererei
ENSSMAG00000021018	-	100	92.280	ENSPNYG00000003694	upf1	100	92.639	Pundamilia_nyererei
ENSSMAG00000021018	-	100	94.742	ENSPNAG00000025614	upf1	100	94.923	Pygocentrus_nattereri
ENSSMAG00000021018	-	100	92.211	ENSRNOG00000020134	Upf1	100	92.211	Rattus_norvegicus
ENSSMAG00000021018	-	95	91.548	ENSRBIG00000013894	UPF1	98	94.432	Rhinopithecus_bieti
ENSSMAG00000021018	-	95	93.922	ENSRROG00000040935	UPF1	98	94.432	Rhinopithecus_roxellana
ENSSMAG00000021018	-	72	57.822	YMR080C	NAM7	82	57.822	Saccharomyces_cerevisiae
ENSSMAG00000021018	-	94	94.179	ENSSBOG00000023632	UPF1	96	94.084	Saimiri_boliviensis_boliviensis
ENSSMAG00000021018	-	95	93.744	ENSSHAG00000010499	UPF1	100	93.649	Sarcophilus_harrisii
ENSSMAG00000021018	-	100	96.007	ENSSFOG00015021095	upf1	100	96.007	Scleropages_formosus
ENSSMAG00000021018	-	100	91.778	ENSSDUG00000013320	upf1	100	92.583	Seriola_dumerili
ENSSMAG00000021018	-	100	99.274	ENSSDUG00000009629	-	100	99.274	Seriola_dumerili
ENSSMAG00000021018	-	100	92.606	ENSSLDG00000020868	upf1	100	92.883	Seriola_lalandi_dorsalis
ENSSMAG00000021018	-	100	99.274	ENSSLDG00000006878	-	100	99.274	Seriola_lalandi_dorsalis
ENSSMAG00000021018	-	100	92.902	ENSSPUG00000010538	UPF1	100	92.902	Sphenodon_punctatus
ENSSMAG00000021018	-	100	98.911	ENSSPAG00000011521	-	100	98.911	Stegastes_partitus
ENSSMAG00000021018	-	100	90.950	ENSSPAG00000000003	upf1	100	90.835	Stegastes_partitus
ENSSMAG00000021018	-	100	92.672	ENSSSCG00000039301	UPF1	99	94.545	Sus_scrofa
ENSSMAG00000021018	-	82	86.915	ENSTGUG00000001057	UPF1	100	91.272	Taeniopygia_guttata
ENSSMAG00000021018	-	100	97.278	ENSTRUG00000005131	-	100	97.278	Takifugu_rubripes
ENSSMAG00000021018	-	100	92.656	ENSTRUG00000000150	upf1	100	92.566	Takifugu_rubripes
ENSSMAG00000021018	-	100	89.097	ENSTTRG00000011544	UPF1	100	89.008	Tursiops_truncatus
ENSSMAG00000021018	-	100	92.424	ENSUAMG00000007093	UPF1	100	92.424	Ursus_americanus
ENSSMAG00000021018	-	95	94.641	ENSUMAG00000006652	UPF1	99	95.036	Ursus_maritimus
ENSSMAG00000021018	-	100	92.513	ENSVVUG00000007797	UPF1	100	92.513	Vulpes_vulpes
ENSSMAG00000021018	-	100	79.736	ENSXETG00000013602	upf1	100	79.736	Xenopus_tropicalis
ENSSMAG00000021018	-	94	97.967	ENSXCOG00000005764	-	100	97.967	Xiphophorus_couchianus
ENSSMAG00000021018	-	97	91.549	ENSXCOG00000015275	-	96	91.549	Xiphophorus_couchianus
ENSSMAG00000021018	-	100	91.924	ENSXMAG00000001703	-	100	91.924	Xiphophorus_maculatus
ENSSMAG00000021018	-	100	97.913	ENSXMAG00000002540	-	100	97.913	Xiphophorus_maculatus