EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSMAG00000021020 (Gene tree)
Gene ID: -
Gene Symbol: lsm4
Alias: zgc:73057|zgc:77848
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Plus strand
Length: 6175 bases
Position: chr12:8037691-8043865
Accession: ZDB-GENE-040426-1652
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000034357	LSM	PF01423.22	1.2e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000034797	-	4115	-	ENSSMAP00000034357	150 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000021020's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000021020's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSMAG00000021020	lsm4	65	32.673	ENSSMAG00000001122	si:ch73-14h10.2	100	32.673
ENSSMAG00000021020	lsm4	51	32.468	ENSSMAG00000001297	oscp1a	62	33.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000021020	lsm4	95	72.535	ENSG00000130520	LSM4	99	75.000	Homo_sapiens
ENSSMAG00000021020	lsm4	100	90.132	ENSAPOG00000005643	lsm4	100	87.417	Acanthochromis_polyacanthus
ENSSMAG00000021020	lsm4	58	98.851	ENSAMEG00000011162	LSM4	67	95.918	Ailuropoda_melanoleuca
ENSSMAG00000021020	lsm4	100	90.667	ENSAOCG00000006414	lsm4	100	83.333	Amphiprion_ocellaris
ENSSMAG00000021020	lsm4	100	90.667	ENSAPEG00000006238	lsm4	100	84.667	Amphiprion_percula
ENSSMAG00000021020	lsm4	100	88.889	ENSATEG00000016559	lsm4	100	87.500	Anabas_testudineus
ENSSMAG00000021020	lsm4	95	72.535	ENSANAG00000034659	LSM4	99	71.831	Aotus_nancymaae
ENSSMAG00000021020	lsm4	100	92.667	ENSACLG00000022738	lsm4	100	84.000	Astatotilapia_calliptera
ENSSMAG00000021020	lsm4	100	82.000	ENSAMXG00000016932	lsm4	100	76.667	Astyanax_mexicanus
ENSSMAG00000021020	lsm4	95	72.535	ENSBTAG00000008578	LSM4	99	71.831	Bos_taurus
ENSSMAG00000021020	lsm4	55	75.904	WBGene00003078	lsm-4	82	67.327	Caenorhabditis_elegans
ENSSMAG00000021020	lsm4	95	72.535	ENSCJAG00000014171	LSM4	99	71.831	Callithrix_jacchus
ENSSMAG00000021020	lsm4	95	71.831	ENSCAFG00000014900	LSM4	90	71.831	Canis_familiaris
ENSSMAG00000021020	lsm4	95	72.535	ENSCAFG00020012137	LSM4	99	71.831	Canis_lupus_dingo
ENSSMAG00000021020	lsm4	94	73.050	ENSCHIG00000010928	LSM4	91	71.631	Capra_hircus
ENSSMAG00000021020	lsm4	95	71.831	ENSTSYG00000030906	LSM4	99	71.127	Carlito_syrichta
ENSSMAG00000021020	lsm4	59	97.727	ENSCAPG00000014140	LSM4	71	94.949	Cavia_aperea
ENSSMAG00000021020	lsm4	59	97.727	ENSCPOG00000024117	LSM4	71	94.949	Cavia_porcellus
ENSSMAG00000021020	lsm4	95	72.535	ENSCCAG00000036308	LSM4	99	71.831	Cebus_capucinus
ENSSMAG00000021020	lsm4	95	72.535	ENSCATG00000029311	LSM4	97	74.627	Cercocebus_atys
ENSSMAG00000021020	lsm4	95	72.535	ENSCLAG00000010828	LSM4	99	71.831	Chinchilla_lanigera
ENSSMAG00000021020	lsm4	95	72.535	ENSCSAG00000005370	LSM4	99	71.831	Chlorocebus_sabaeus
ENSSMAG00000021020	lsm4	87	81.538	ENSCPBG00000012925	LSM4	72	96.970	Chrysemys_picta_bellii
ENSSMAG00000021020	lsm4	57	93.023	ENSCING00000007519	-	78	85.859	Ciona_intestinalis
ENSSMAG00000021020	lsm4	57	93.023	ENSCSAVG00000008596	-	79	85.859	Ciona_savignyi
ENSSMAG00000021020	lsm4	95	72.535	ENSCANG00000043686	LSM4	99	71.831	Colobus_angolensis_palliatus
ENSSMAG00000021020	lsm4	59	95.455	ENSCGRG00001014436	Lsm4	71	92.929	Cricetulus_griseus_chok1gshd
ENSSMAG00000021020	lsm4	58	95.402	ENSCGRG00000009398	Lsm4	71	92.857	Cricetulus_griseus_crigri
ENSSMAG00000021020	lsm4	100	86.667	ENSCSEG00000016127	lsm4	100	82.000	Cynoglossus_semilaevis
ENSSMAG00000021020	lsm4	90	84.444	ENSCVAG00000021828	lsm4	98	73.333	Cyprinodon_variegatus
ENSSMAG00000021020	lsm4	100	86.000	ENSCVAG00000010601	lsm4	100	76.000	Cyprinodon_variegatus
ENSSMAG00000021020	lsm4	91	79.577	ENSDARG00000023852	lsm4	69	96.970	Danio_rerio
ENSSMAG00000021020	lsm4	95	71.831	ENSDORG00000024225	Lsm4	99	71.127	Dipodomys_ordii
ENSSMAG00000021020	lsm4	70	78.095	FBgn0032240	CG17768	58	86.667	Drosophila_melanogaster
ENSSMAG00000021020	lsm4	50	93.333	ENSEBUG00000003639	-	64	78.125	Eptatretus_burgeri
ENSSMAG00000021020	lsm4	95	72.535	ENSECAG00000010141	LSM4	56	71.831	Equus_caballus
ENSSMAG00000021020	lsm4	87	86.154	ENSELUG00000012821	lsm4	74	97.959	Esox_lucius
ENSSMAG00000021020	lsm4	95	72.535	ENSFCAG00000040580	LSM4	99	71.831	Felis_catus
ENSSMAG00000021020	lsm4	86	80.620	ENSFALG00000009478	LSM4	71	96.939	Ficedula_albicollis
ENSSMAG00000021020	lsm4	94	72.340	ENSFDAG00000010124	LSM4	99	71.631	Fukomys_damarensis
ENSSMAG00000021020	lsm4	99	77.273	ENSGMOG00000007729	lsm4	99	74.667	Gadus_morhua
ENSSMAG00000021020	lsm4	87	80.769	ENSGALG00000003385	LSM4	72	96.970	Gallus_gallus
ENSSMAG00000021020	lsm4	100	88.667	ENSGAFG00000004903	lsm4	97	72.593	Gambusia_affinis
ENSSMAG00000021020	lsm4	100	82.781	ENSGACG00000008140	lsm4	100	82.667	Gasterosteus_aculeatus
ENSSMAG00000021020	lsm4	87	81.538	ENSGAGG00000017812	LSM4	72	96.970	Gopherus_agassizii
ENSSMAG00000021020	lsm4	95	72.535	ENSGGOG00000012914	-	97	74.627	Gorilla_gorilla
ENSSMAG00000021020	lsm4	100	92.000	ENSHBUG00000008858	lsm4	80	80.000	Haplochromis_burtoni
ENSSMAG00000021020	lsm4	89	83.704	ENSHGLG00000006568	LSM4	71	95.960	Heterocephalus_glaber_female
ENSSMAG00000021020	lsm4	61	98.913	ENSHGLG00100007894	LSM4	99	98.913	Heterocephalus_glaber_male
ENSSMAG00000021020	lsm4	100	87.333	ENSHCOG00000008819	lsm4	100	82.000	Hippocampus_comes
ENSSMAG00000021020	lsm4	100	82.000	ENSIPUG00000005368	Lsm4	100	77.333	Ictalurus_punctatus
ENSSMAG00000021020	lsm4	95	72.535	ENSSTOG00000016494	LSM4	99	71.831	Ictidomys_tridecemlineatus
ENSSMAG00000021020	lsm4	95	70.423	ENSJJAG00000017420	Lsm4	99	70.423	Jaculus_jaculus
ENSSMAG00000021020	lsm4	100	84.667	ENSKMAG00000005073	lsm4	100	79.333	Kryptolebias_marmoratus
ENSSMAG00000021020	lsm4	100	91.333	ENSLBEG00000027930	lsm4	100	85.333	Labrus_bergylta
ENSSMAG00000021020	lsm4	59	100.000	ENSLACG00000015861	LSM4	71	96.970	Latimeria_chalumnae
ENSSMAG00000021020	lsm4	85	85.156	ENSLOCG00000002025	lsm4	100	76.000	Lepisosteus_oculatus
ENSSMAG00000021020	lsm4	58	97.701	ENSLAFG00000017459	LSM4	71	94.898	Loxodonta_africana
ENSSMAG00000021020	lsm4	95	72.535	ENSMFAG00000031194	LSM4	99	71.831	Macaca_fascicularis
ENSSMAG00000021020	lsm4	95	72.535	ENSMMUG00000004405	LSM4	99	71.831	Macaca_mulatta
ENSSMAG00000021020	lsm4	95	72.535	ENSMNEG00000042899	LSM4	99	71.831	Macaca_nemestrina
ENSSMAG00000021020	lsm4	95	72.535	ENSMLEG00000027948	LSM4	97	74.627	Mandrillus_leucophaeus
ENSSMAG00000021020	lsm4	100	92.000	ENSMAMG00000006190	lsm4	100	82.000	Mastacembelus_armatus
ENSSMAG00000021020	lsm4	100	92.000	ENSMZEG00005016420	lsm4	100	80.000	Maylandia_zebra
ENSSMAG00000021020	lsm4	92	75.000	ENSMGAG00000004976	LSM4	71	96.939	Meleagris_gallopavo
ENSSMAG00000021020	lsm4	95	71.127	ENSMICG00000000222	LSM4	99	71.127	Microcebus_murinus
ENSSMAG00000021020	lsm4	95	69.718	ENSMOCG00000020861	Lsm4	99	69.718	Microtus_ochrogaster
ENSSMAG00000021020	lsm4	100	86.667	ENSMALG00000018159	lsm4	100	77.333	Monopterus_albus
ENSSMAG00000021020	lsm4	95	69.718	MGP_CAROLIEiJ_G0031158	Lsm4	99	69.718	Mus_caroli
ENSSMAG00000021020	lsm4	95	69.718	ENSMUSG00000031848	Lsm4	96	86.869	Mus_musculus
ENSSMAG00000021020	lsm4	95	69.718	MGP_PahariEiJ_G0021623	Lsm4	99	69.718	Mus_pahari
ENSSMAG00000021020	lsm4	95	69.718	MGP_SPRETEiJ_G0032276	Lsm4	99	69.718	Mus_spretus
ENSSMAG00000021020	lsm4	95	72.535	ENSMPUG00000015589	LSM4	99	71.831	Mustela_putorius_furo
ENSSMAG00000021020	lsm4	94	72.340	ENSMLUG00000004010	LSM4	99	71.631	Myotis_lucifugus
ENSSMAG00000021020	lsm4	95	69.718	ENSNGAG00000008644	Lsm4	99	69.718	Nannospalax_galili
ENSSMAG00000021020	lsm4	72	97.222	ENSNBRG00000022150	lsm4	67	97.222	Neolamprologus_brichardi
ENSSMAG00000021020	lsm4	51	97.403	ENSOPRG00000005575	LSM4	71	94.048	Ochotona_princeps
ENSSMAG00000021020	lsm4	59	88.636	ENSODEG00000004519	-	72	85.859	Octodon_degus
ENSSMAG00000021020	lsm4	95	72.535	ENSODEG00000020549	-	99	71.831	Octodon_degus
ENSSMAG00000021020	lsm4	93	61.429	ENSODEG00000011712	-	70	60.215	Octodon_degus
ENSSMAG00000021020	lsm4	100	92.667	ENSONIG00000012724	lsm4	100	84.000	Oreochromis_niloticus
ENSSMAG00000021020	lsm4	58	94.505	ENSOANG00000007434	LSM4	88	92.157	Ornithorhynchus_anatinus
ENSSMAG00000021020	lsm4	100	89.333	ENSORLG00000008391	lsm4	100	78.000	Oryzias_latipes
ENSSMAG00000021020	lsm4	100	90.000	ENSORLG00020014829	lsm4	100	78.667	Oryzias_latipes_hni
ENSSMAG00000021020	lsm4	100	90.667	ENSORLG00015010205	lsm4	100	78.667	Oryzias_latipes_hsok
ENSSMAG00000021020	lsm4	100	88.667	ENSOMEG00000003606	lsm4	100	78.000	Oryzias_melastigma
ENSSMAG00000021020	lsm4	65	94.898	ENSOGAG00000027992	LSM4	67	94.898	Otolemur_garnettii
ENSSMAG00000021020	lsm4	58	98.851	ENSOARG00000012553	LSM4	68	95.918	Ovis_aries
ENSSMAG00000021020	lsm4	95	72.535	ENSPPAG00000044045	-	99	71.831	Pan_paniscus
ENSSMAG00000021020	lsm4	95	72.535	ENSPPRG00000018264	LSM4	99	71.831	Panthera_pardus
ENSSMAG00000021020	lsm4	94	72.340	ENSPTIG00000006306	LSM4	99	71.631	Panthera_tigris_altaica
ENSSMAG00000021020	lsm4	95	72.535	ENSPTRG00000031470	LSM4	99	71.831	Pan_troglodytes
ENSSMAG00000021020	lsm4	95	72.535	ENSPANG00000014399	LSM4	97	74.627	Papio_anubis
ENSSMAG00000021020	lsm4	100	80.000	ENSPKIG00000006154	lsm4	100	76.667	Paramormyrops_kingsleyae
ENSSMAG00000021020	lsm4	86	80.620	ENSPSIG00000012358	LSM4	72	96.939	Pelodiscus_sinensis
ENSSMAG00000021020	lsm4	95	69.718	ENSPEMG00000001358	Lsm4	99	69.718	Peromyscus_maniculatus_bairdii
ENSSMAG00000021020	lsm4	100	88.667	ENSPFOG00000000570	lsm4	76	76.000	Poecilia_formosa
ENSSMAG00000021020	lsm4	100	84.667	ENSPLAG00000016267	lsm4	100	76.000	Poecilia_latipinna
ENSSMAG00000021020	lsm4	100	88.667	ENSPMEG00000016378	lsm4	100	76.000	Poecilia_mexicana
ENSSMAG00000021020	lsm4	100	86.000	ENSPREG00000011290	lsm4	76	76.000	Poecilia_reticulata
ENSSMAG00000021020	lsm4	95	72.535	ENSPPYG00000009736	LSM4	99	71.831	Pongo_abelii
ENSSMAG00000021020	lsm4	95	71.127	ENSPCOG00000019837	LSM4	99	71.127	Propithecus_coquereli
ENSSMAG00000021020	lsm4	95	72.535	ENSPVAG00000015383	LSM4	99	71.831	Pteropus_vampyrus
ENSSMAG00000021020	lsm4	100	92.000	ENSPNYG00000016794	lsm4	100	80.000	Pundamilia_nyererei
ENSSMAG00000021020	lsm4	95	82.517	ENSPNAG00000016598	lsm4	73	97.959	Pygocentrus_nattereri
ENSSMAG00000021020	lsm4	95	69.718	ENSRNOG00000019572	Lsm4	99	69.718	Rattus_norvegicus
ENSSMAG00000021020	lsm4	95	72.535	ENSRBIG00000024717	LSM4	97	73.913	Rhinopithecus_bieti
ENSSMAG00000021020	lsm4	95	72.535	ENSRROG00000045706	LSM4	97	73.913	Rhinopithecus_roxellana
ENSSMAG00000021020	lsm4	55	40.860	YER112W	LSM4	51	41.053	Saccharomyces_cerevisiae
ENSSMAG00000021020	lsm4	85	70.312	ENSSBOG00000022455	LSM4	99	68.750	Saimiri_boliviensis_boliviensis
ENSSMAG00000021020	lsm4	59	100.000	ENSSHAG00000011559	LSM4	71	96.970	Sarcophilus_harrisii
ENSSMAG00000021020	lsm4	100	81.333	ENSSFOG00015021067	lsm4	100	77.333	Scleropages_formosus
ENSSMAG00000021020	lsm4	100	82.143	ENSSDUG00000009588	lsm4	100	77.246	Seriola_dumerili
ENSSMAG00000021020	lsm4	100	81.657	ENSSLDG00000006827	lsm4	100	76.190	Seriola_lalandi_dorsalis
ENSSMAG00000021020	lsm4	58	100.000	ENSSPUG00000010166	LSM4	63	96.939	Sphenodon_punctatus
ENSSMAG00000021020	lsm4	100	89.474	ENSSPAG00000011615	lsm4	100	86.755	Stegastes_partitus
ENSSMAG00000021020	lsm4	95	72.535	ENSSSCG00000034314	LSM4	99	71.831	Sus_scrofa
ENSSMAG00000021020	lsm4	100	90.000	ENSTRUG00000021737	lsm4	100	77.333	Takifugu_rubripes
ENSSMAG00000021020	lsm4	100	83.444	ENSTNIG00000010191	lsm4	100	76.667	Tetraodon_nigroviridis
ENSSMAG00000021020	lsm4	94	72.340	ENSUAMG00000000665	LSM4	82	95.960	Ursus_americanus
ENSSMAG00000021020	lsm4	95	72.535	ENSUMAG00000009013	LSM4	99	71.831	Ursus_maritimus
ENSSMAG00000021020	lsm4	94	72.340	ENSVVUG00000008136	LSM4	70	71.631	Vulpes_vulpes
ENSSMAG00000021020	lsm4	97	72.414	ENSXETG00000024933	lsm4	71	95.918	Xenopus_tropicalis
ENSSMAG00000021020	lsm4	100	88.000	ENSXMAG00000026672	lsm4	76	76.000	Xiphophorus_maculatus