EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSMAG00000021241 (Gene tree)
Gene ID: -
Gene Symbol: ncl
Alias: fa12d03|wu:fa12d03|zgc:152810
Full Name: nucleolin
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Plus strand
Length: 8622 bases
Position: chr12:9756110-9764731
Accession: ZDB-GENE-030131-6986
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000034739	RRM_1	PF00076.22	4.8e-65	1	4
ENSSMAP00000034739	RRM_1	PF00076.22	4.8e-65	2	4
ENSSMAP00000034739	RRM_1	PF00076.22	4.8e-65	3	4
ENSSMAP00000034739	RRM_1	PF00076.22	4.8e-65	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000035181	-	3821	-	ENSSMAP00000034739	702 (aa)	-	A0A2U9C542

Gene Model

Click here to download ENSSMAG00000021241's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000021241's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSMAG00000021241	ncl	59	44.289	ENSSMAG00000007582	-	61	46.719
ENSSMAG00000021241	ncl	50	31.250	ENSSMAG00000010516	pabpc1l	78	33.913
ENSSMAG00000021241	ncl	50	31.548	ENSSMAG00000006869	pabpc1b	60	31.818
ENSSMAG00000021241	ncl	50	30.508	ENSSMAG00000009007	pabpc4	59	31.250
ENSSMAG00000021241	ncl	50	31.548	ENSSMAG00000010803	pabpc1a	59	31.818

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000021241	ncl	60	85.106	ENSAPOG00000023888	ncl	59	85.106	Acanthochromis_polyacanthus
ENSSMAG00000021241	ncl	59	41.609	ENSAPOG00000014534	-	67	42.347	Acanthochromis_polyacanthus
ENSSMAG00000021241	ncl	54	78.100	ENSACIG00000013234	ncl	62	78.515	Amphilophus_citrinellus
ENSSMAG00000021241	ncl	59	39.767	ENSAOCG00000014792	-	61	42.010	Amphiprion_ocellaris
ENSSMAG00000021241	ncl	60	86.118	ENSAOCG00000003133	ncl	60	86.118	Amphiprion_ocellaris
ENSSMAG00000021241	ncl	59	40.000	ENSAPEG00000013612	-	60	42.268	Amphiprion_percula
ENSSMAG00000021241	ncl	60	85.849	ENSAPEG00000002769	ncl	59	85.849	Amphiprion_percula
ENSSMAG00000021241	ncl	61	44.789	ENSATEG00000019862	-	80	45.758	Anabas_testudineus
ENSSMAG00000021241	ncl	66	84.516	ENSATEG00000013343	ncl	60	86.525	Anabas_testudineus
ENSSMAG00000021241	ncl	82	56.818	ENSAPLG00000012897	-	63	58.421	Anas_platyrhynchos
ENSSMAG00000021241	ncl	62	65.753	ENSAMXG00000001647	ncl	81	69.900	Astyanax_mexicanus
ENSSMAG00000021241	ncl	54	40.310	ENSCHIG00000012665	-	55	40.874	Capra_hircus
ENSSMAG00000021241	ncl	54	59.896	ENSCPBG00000016444	-	56	59.432	Chrysemys_picta_bellii
ENSSMAG00000021241	ncl	63	85.146	ENSCSEG00000015089	ncl	64	83.019	Cynoglossus_semilaevis
ENSSMAG00000021241	ncl	53	81.818	ENSCVAG00000012600	ncl	61	79.669	Cyprinodon_variegatus
ENSSMAG00000021241	ncl	60	73.474	ENSDARG00000002710	ncl	83	74.841	Danio_rerio
ENSSMAG00000021241	ncl	53	47.453	ENSDNOG00000040257	-	63	46.719	Dasypus_novemcinctus
ENSSMAG00000021241	ncl	60	73.068	ENSELUG00000006033	ncl	63	73.536	Esox_lucius
ENSSMAG00000021241	ncl	61	45.412	ENSELUG00000022826	-	80	47.594	Esox_lucius
ENSSMAG00000021241	ncl	53	57.552	ENSFALG00000007592	-	54	57.292	Ficedula_albicollis
ENSSMAG00000021241	ncl	67	75.177	ENSFHEG00000018000	ncl	65	75.177	Fundulus_heteroclitus
ENSSMAG00000021241	ncl	54	68.912	ENSGMOG00000001341	ncl	66	68.150	Gadus_morhua
ENSSMAG00000021241	ncl	53	59.055	ENSGALG00000032930	NCL	55	58.793	Gallus_gallus
ENSSMAG00000021241	ncl	67	75.855	ENSGAFG00000015375	ncl	58	78.788	Gambusia_affinis
ENSSMAG00000021241	ncl	88	66.819	ENSGACG00000008970	ncl	66	80.048	Gasterosteus_aculeatus
ENSSMAG00000021241	ncl	53	60.313	ENSGAGG00000013330	-	56	59.845	Gopherus_agassizii
ENSSMAG00000021241	ncl	53	79.200	ENSHBUG00000006869	ncl	89	70.747	Haplochromis_burtoni
ENSSMAG00000021241	ncl	69	76.707	ENSHCOG00000010234	ncl	89	72.998	Hippocampus_comes
ENSSMAG00000021241	ncl	53	72.168	ENSIPUG00000024556	ncl	81	72.168	Ictalurus_punctatus
ENSSMAG00000021241	ncl	60	80.615	ENSKMAG00000008111	ncl	59	81.797	Kryptolebias_marmoratus
ENSSMAG00000021241	ncl	56	44.169	ENSLBEG00000007915	-	66	44.216	Labrus_bergylta
ENSSMAG00000021241	ncl	51	43.045	ENSLBEG00000014278	-	82	43.443	Labrus_bergylta
ENSSMAG00000021241	ncl	60	87.707	ENSLBEG00000019073	ncl	62	87.234	Labrus_bergylta
ENSSMAG00000021241	ncl	60	50.236	ENSLACG00000022167	-	83	50.125	Latimeria_chalumnae
ENSSMAG00000021241	ncl	60	61.882	ENSLACG00000009328	ncl	62	61.737	Latimeria_chalumnae
ENSSMAG00000021241	ncl	51	68.144	ENSLOCG00000004828	ncl	57	67.757	Lepisosteus_oculatus
ENSSMAG00000021241	ncl	66	39.709	ENSMAMG00000003479	-	69	42.338	Mastacembelus_armatus
ENSSMAG00000021241	ncl	66	84.199	ENSMAMG00000002086	ncl	51	86.085	Mastacembelus_armatus
ENSSMAG00000021241	ncl	60	77.778	ENSMZEG00005017438	ncl	60	77.778	Maylandia_zebra
ENSSMAG00000021241	ncl	52	58.760	ENSMGAG00000008147	-	83	61.842	Meleagris_gallopavo
ENSSMAG00000021241	ncl	51	86.834	ENSMMOG00000008553	ncl	84	86.792	Mola_mola
ENSSMAG00000021241	ncl	92	74.371	ENSMALG00000014827	ncl	65	79.905	Monopterus_albus
ENSSMAG00000021241	ncl	50	43.087	ENSMPUG00000001663	-	57	44.051	Mustela_putorius_furo
ENSSMAG00000021241	ncl	52	79.725	ENSNBRG00000001232	ncl	82	79.725	Neolamprologus_brichardi
ENSSMAG00000021241	ncl	54	79.725	ENSNBRG00000000146	-	86	79.725	Neolamprologus_brichardi
ENSSMAG00000021241	ncl	56	58.897	ENSMEUG00000012335	-	57	58.897	Notamacropus_eugenii
ENSSMAG00000021241	ncl	53	79.200	ENSONIG00000012508	ncl	59	77.830	Oreochromis_niloticus
ENSSMAG00000021241	ncl	52	53.571	ENSONIG00000010631	-	77	55.696	Oreochromis_niloticus
ENSSMAG00000021241	ncl	53	58.355	ENSOANG00000008732	-	61	58.808	Ornithorhynchus_anatinus
ENSSMAG00000021241	ncl	55	38.889	ENSORLG00000004645	-	83	38.903	Oryzias_latipes
ENSSMAG00000021241	ncl	51	84.765	ENSORLG00000007055	ncl	90	67.015	Oryzias_latipes
ENSSMAG00000021241	ncl	55	38.889	ENSORLG00020003497	-	74	38.903	Oryzias_latipes_hni
ENSSMAG00000021241	ncl	83	70.658	ENSORLG00015013815	ncl	86	83.810	Oryzias_latipes_hsok
ENSSMAG00000021241	ncl	57	36.930	ENSORLG00015006613	-	77	39.426	Oryzias_latipes_hsok
ENSSMAG00000021241	ncl	54	83.554	ENSOMEG00000020786	ncl	67	81.132	Oryzias_melastigma
ENSSMAG00000021241	ncl	56	38.424	ENSOMEG00000015864	-	82	38.961	Oryzias_melastigma
ENSSMAG00000021241	ncl	65	72.527	ENSPKIG00000002604	ncl	62	75.000	Paramormyrops_kingsleyae
ENSSMAG00000021241	ncl	54	59.740	ENSPSIG00000002361	-	54	59.635	Pelodiscus_sinensis
ENSSMAG00000021241	ncl	53	77.814	ENSPMGG00000004709	ncl	84	77.994	Periophthalmus_magnuspinnatus
ENSSMAG00000021241	ncl	56	58.128	ENSPCIG00000003293	-	63	51.416	Phascolarctos_cinereus
ENSSMAG00000021241	ncl	70	71.780	ENSPLAG00000024026	ncl	57	79.196	Poecilia_latipinna
ENSSMAG00000021241	ncl	56	73.364	ENSPMEG00000006000	ncl	58	73.131	Poecilia_mexicana
ENSSMAG00000021241	ncl	60	69.668	ENSPNAG00000006192	ncl	58	69.811	Pygocentrus_nattereri
ENSSMAG00000021241	ncl	53	53.525	ENSSHAG00000002702	-	59	53.281	Sarcophilus_harrisii
ENSSMAG00000021241	ncl	65	71.397	ENSSFOG00015008583	ncl	66	75.644	Scleropages_formosus
ENSSMAG00000021241	ncl	61	43.890	ENSSDUG00000010922	-	70	44.156	Seriola_dumerili
ENSSMAG00000021241	ncl	100	78.793	ENSSDUG00000006128	ncl	85	90.186	Seriola_dumerili
ENSSMAG00000021241	ncl	69	82.992	ENSSLDG00000002012	ncl	89	80.063	Seriola_lalandi_dorsalis
ENSSMAG00000021241	ncl	59	43.860	ENSSLDG00000015784	-	83	44.125	Seriola_lalandi_dorsalis
ENSSMAG00000021241	ncl	53	58.734	ENSSPUG00000008244	-	60	58.987	Sphenodon_punctatus
ENSSMAG00000021241	ncl	59	43.062	ENSSPAG00000001859	-	61	43.264	Stegastes_partitus
ENSSMAG00000021241	ncl	50	87.018	ENSSPAG00000002637	ncl	79	87.018	Stegastes_partitus
ENSSMAG00000021241	ncl	53	57.033	ENSTGUG00000009782	-	60	58.639	Taeniopygia_guttata
ENSSMAG00000021241	ncl	60	80.047	ENSTRUG00000008185	ncl	62	80.282	Takifugu_rubripes
ENSSMAG00000021241	ncl	54	82.181	ENSTNIG00000012186	ncl	69	77.725	Tetraodon_nigroviridis
ENSSMAG00000021241	ncl	53	40.314	ENSXCOG00000007369	-	89	40.526	Xiphophorus_couchianus
ENSSMAG00000021241	ncl	56	50.154	ENSXCOG00000003524	ncl	86	62.334	Xiphophorus_couchianus
ENSSMAG00000021241	ncl	66	77.155	ENSXMAG00000005914	ncl	58	79.765	Xiphophorus_maculatus