EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSPAG00000000003 (Gene tree)
Gene ID: 103367511
Gene Symbol: upf1
Alias: rent1|wu:fi40f07|wu:fj48a01|zgc:55472
Full Name: regulator of nonsense transcripts 1-like
Gene Type: protein_coding
Species: Stegastes_partitus
Status: putative
Strand: Minus strand
Length: 15048 bases
Position: chrKK580071.1:28324-43371
Accession: 103367511
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPAP00000000003	UPF1_Zn_bind	PF09416.10	5.9e-56	1	1
ENSSPAP00000000003	ResIII	PF04851.15	2.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPAT00000000003	-	3231	XM_008295588	ENSSPAP00000000003	1076 (aa)	XP_008293810	-

Gene Model

Click here to download ENSSPAG00000000003's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPAG00000000003's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSPAG00000000003	upf1	100	90.818	ENSSPAG00000011521	-	100	90.909

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPAG00000000003	upf1	100	89.136	ENSG00000005007	UPF1	100	89.196	Homo_sapiens
ENSSPAG00000000003	upf1	100	91.008	ENSAPOG00000010916	-	100	91.123	Acanthochromis_polyacanthus
ENSSPAG00000000003	upf1	100	95.238	ENSAPOG00000023773	upf1	100	95.238	Acanthochromis_polyacanthus
ENSSPAG00000000003	upf1	100	88.663	ENSAMEG00000011474	UPF1	100	88.721	Ailuropoda_melanoleuca
ENSSPAG00000000003	upf1	93	90.625	ENSACIG00000010985	-	100	90.573	Amphilophus_citrinellus
ENSSPAG00000000003	upf1	100	95.636	ENSACIG00000019949	upf1	100	95.636	Amphilophus_citrinellus
ENSSPAG00000000003	upf1	100	91.008	ENSAOCG00000006352	-	100	91.123	Amphiprion_ocellaris
ENSSPAG00000000003	upf1	100	95.328	ENSAOCG00000018519	upf1	100	95.328	Amphiprion_ocellaris
ENSSPAG00000000003	upf1	100	91.008	ENSAPEG00000006292	-	100	91.123	Amphiprion_percula
ENSSPAG00000000003	upf1	100	95.328	ENSAPEG00000016344	upf1	100	95.328	Amphiprion_percula
ENSSPAG00000000003	upf1	100	94.439	ENSATEG00000017867	upf1	100	94.439	Anabas_testudineus
ENSSPAG00000000003	upf1	100	91.008	ENSATEG00000016606	-	100	91.123	Anabas_testudineus
ENSSPAG00000000003	upf1	95	90.548	ENSAPLG00000009175	UPF1	100	90.521	Anas_platyrhynchos
ENSSPAG00000000003	upf1	95	88.815	ENSANAG00000024107	UPF1	95	88.783	Aotus_nancymaae
ENSSPAG00000000003	upf1	100	90.736	ENSACLG00000022630	-	100	90.851	Astatotilapia_calliptera
ENSSPAG00000000003	upf1	100	95.545	ENSACLG00000007181	upf1	100	95.545	Astatotilapia_calliptera
ENSSPAG00000000003	upf1	100	92.287	ENSAMXG00000042187	upf1	100	92.656	Astyanax_mexicanus
ENSSPAG00000000003	upf1	100	88.683	ENSBTAG00000020922	UPF1	100	88.741	Bos_taurus
ENSSPAG00000000003	upf1	81	53.013	WBGene00004880	smg-2	83	52.790	Caenorhabditis_elegans
ENSSPAG00000000003	upf1	100	88.272	ENSCJAG00000019627	UPF1	100	88.329	Callithrix_jacchus
ENSSPAG00000000003	upf1	100	88.448	ENSCAFG00000014578	UPF1	100	88.506	Canis_familiaris
ENSSPAG00000000003	upf1	100	89.314	ENSCAFG00020012347	UPF1	100	89.375	Canis_lupus_dingo
ENSSPAG00000000003	upf1	100	89.554	ENSCHIG00000011018	UPF1	100	89.615	Capra_hircus
ENSSPAG00000000003	upf1	95	90.237	ENSTSYG00000008877	UPF1	98	90.209	Carlito_syrichta
ENSSPAG00000000003	upf1	96	89.691	ENSCAPG00000005758	UPF1	95	90.019	Cavia_aperea
ENSSPAG00000000003	upf1	100	89.596	ENSCPOG00000025463	UPF1	100	89.388	Cavia_porcellus
ENSSPAG00000000003	upf1	100	89.136	ENSCCAG00000032175	UPF1	100	89.196	Cebus_capucinus
ENSSPAG00000000003	upf1	94	90.200	ENSCATG00000040306	UPF1	98	89.773	Cercocebus_atys
ENSSPAG00000000003	upf1	95	90.142	ENSCLAG00000004037	UPF1	99	90.114	Chinchilla_lanigera
ENSSPAG00000000003	upf1	100	89.136	ENSCSAG00000005276	UPF1	100	89.196	Chlorocebus_sabaeus
ENSSPAG00000000003	upf1	100	89.705	ENSCPBG00000012513	UPF1	100	89.677	Chrysemys_picta_bellii
ENSSPAG00000000003	upf1	77	76.995	ENSCING00000021399	-	99	76.761	Ciona_intestinalis
ENSSPAG00000000003	upf1	99	70.657	ENSCSAVG00000006533	-	99	70.646	Ciona_savignyi
ENSSPAG00000000003	upf1	95	90.142	ENSCANG00000029819	UPF1	97	90.114	Colobus_angolensis_palliatus
ENSSPAG00000000003	upf1	100	89.366	ENSCGRG00001021067	Upf1	100	89.327	Cricetulus_griseus_chok1gshd
ENSSPAG00000000003	upf1	95	89.962	ENSCGRG00000013480	Upf1	98	89.829	Cricetulus_griseus_crigri
ENSSPAG00000000003	upf1	100	91.206	ENSCSEG00000016159	-	100	90.934	Cynoglossus_semilaevis
ENSSPAG00000000003	upf1	100	88.069	ENSCSEG00000017239	upf1	100	87.920	Cynoglossus_semilaevis
ENSSPAG00000000003	upf1	100	90.554	ENSCVAG00000010561	upf1	100	90.670	Cyprinodon_variegatus
ENSSPAG00000000003	upf1	100	92.196	ENSDARG00000016302	upf1	100	92.566	Danio_rerio
ENSSPAG00000000003	upf1	95	87.796	ENSDORG00000009984	Upf1	95	87.654	Dipodomys_ordii
ENSSPAG00000000003	upf1	84	70.011	FBgn0030354	Upf1	82	68.378	Drosophila_melanogaster
ENSSPAG00000000003	upf1	54	82.285	ENSEBUG00000010069	upf1	96	82.616	Eptatretus_burgeri
ENSSPAG00000000003	upf1	100	89.554	ENSEASG00005006549	UPF1	100	89.615	Equus_asinus_asinus
ENSSPAG00000000003	upf1	100	89.554	ENSECAG00000010639	UPF1	100	89.615	Equus_caballus
ENSSPAG00000000003	upf1	100	90.433	ENSELUG00000012916	-	100	90.893	Esox_lucius
ENSSPAG00000000003	upf1	100	91.606	ENSELUG00000020917	upf1	100	91.877	Esox_lucius
ENSSPAG00000000003	upf1	100	88.448	ENSFCAG00000009757	UPF1	100	88.506	Felis_catus
ENSSPAG00000000003	upf1	95	91.056	ENSFALG00000009312	UPF1	96	91.031	Ficedula_albicollis
ENSSPAG00000000003	upf1	95	90.047	ENSFDAG00000014816	UPF1	99	90.019	Fukomys_damarensis
ENSSPAG00000000003	upf1	86	91.289	ENSFHEG00000016276	-	96	91.336	Fundulus_heteroclitus
ENSSPAG00000000003	upf1	100	91.375	ENSFHEG00000006428	upf1	100	90.746	Fundulus_heteroclitus
ENSSPAG00000000003	upf1	100	89.829	ENSGMOG00000007541	upf1	100	89.829	Gadus_morhua
ENSSPAG00000000003	upf1	100	89.474	ENSGALG00000003220	UPF1	100	89.356	Gallus_gallus
ENSSPAG00000000003	upf1	64	96.686	ENSGAFG00000015443	-	85	96.686	Gambusia_affinis
ENSSPAG00000000003	upf1	100	90.901	ENSGAFG00000004831	upf1	100	90.628	Gambusia_affinis
ENSSPAG00000000003	upf1	100	90.198	ENSGAGG00000022217	UPF1	100	90.261	Gopherus_agassizii
ENSSPAG00000000003	upf1	95	91.092	ENSGGOG00000002608	UPF1	99	91.066	Gorilla_gorilla
ENSSPAG00000000003	upf1	89	98.718	ENSHBUG00000014694	upf1	100	98.718	Haplochromis_burtoni
ENSSPAG00000000003	upf1	86	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSSPAG00000000003	upf1	100	88.183	ENSHGLG00000010900	UPF1	100	88.230	Heterocephalus_glaber_female
ENSSPAG00000000003	upf1	95	88.341	ENSHGLG00100005904	UPF1	96	88.297	Heterocephalus_glaber_male
ENSSPAG00000000003	upf1	100	90.727	ENSHCOG00000008918	upf1	100	90.588	Hippocampus_comes
ENSSPAG00000000003	upf1	100	92.468	ENSIPUG00000005108	UPF1	100	92.747	Ictalurus_punctatus
ENSSPAG00000000003	upf1	100	89.047	ENSSTOG00000009196	UPF1	100	89.107	Ictidomys_tridecemlineatus
ENSSPAG00000000003	upf1	100	88.652	ENSJJAG00000023151	Upf1	100	88.612	Jaculus_jaculus
ENSSPAG00000000003	upf1	100	90.645	ENSKMAG00000004962	upf1	100	90.580	Kryptolebias_marmoratus
ENSSPAG00000000003	upf1	100	93.980	ENSLBEG00000014862	upf1	100	93.980	Labrus_bergylta
ENSSPAG00000000003	upf1	100	90.000	ENSLBEG00000027848	-	100	90.769	Labrus_bergylta
ENSSPAG00000000003	upf1	65	93.857	ENSLACG00000008482	UPF1	100	93.714	Latimeria_chalumnae
ENSSPAG00000000003	upf1	100	91.909	ENSLOCG00000002072	upf1	100	92.112	Lepisosteus_oculatus
ENSSPAG00000000003	upf1	100	88.251	ENSLAFG00000014963	UPF1	100	88.308	Loxodonta_africana
ENSSPAG00000000003	upf1	100	88.899	ENSMFAG00000037748	UPF1	100	88.958	Macaca_fascicularis
ENSSPAG00000000003	upf1	100	88.663	ENSMMUG00000023286	UPF1	100	88.721	Macaca_mulatta
ENSSPAG00000000003	upf1	100	88.899	ENSMNEG00000000046	UPF1	100	88.958	Macaca_nemestrina
ENSSPAG00000000003	upf1	95	90.142	ENSMLEG00000028404	UPF1	99	90.114	Mandrillus_leucophaeus
ENSSPAG00000000003	upf1	100	94.350	ENSMAMG00000006229	upf1	100	94.350	Mastacembelus_armatus
ENSSPAG00000000003	upf1	100	90.744	ENSMAMG00000006231	-	100	90.950	Mastacembelus_armatus
ENSSPAG00000000003	upf1	100	94.054	ENSMZEG00005003489	upf1	100	94.054	Maylandia_zebra
ENSSPAG00000000003	upf1	100	90.736	ENSMZEG00005016386	-	100	90.851	Maylandia_zebra
ENSSPAG00000000003	upf1	95	90.057	ENSMGAG00000004745	UPF1	100	90.028	Meleagris_gallopavo
ENSSPAG00000000003	upf1	95	89.962	ENSMAUG00000011398	Upf1	95	89.829	Mesocricetus_auratus
ENSSPAG00000000003	upf1	100	89.225	ENSMICG00000001659	UPF1	100	89.286	Microcebus_murinus
ENSSPAG00000000003	upf1	100	88.496	ENSMOCG00000005699	Upf1	100	88.544	Microtus_ochrogaster
ENSSPAG00000000003	upf1	95	88.230	ENSMMOG00000007537	-	99	88.359	Mola_mola
ENSSPAG00000000003	upf1	100	93.522	ENSMMOG00000007881	upf1	100	93.710	Mola_mola
ENSSPAG00000000003	upf1	100	88.391	ENSMODG00000003689	UPF1	100	88.536	Monodelphis_domestica
ENSSPAG00000000003	upf1	100	93.796	ENSMALG00000000144	upf1	100	93.722	Monopterus_albus
ENSSPAG00000000003	upf1	100	89.593	ENSMALG00000018100	-	100	89.711	Monopterus_albus
ENSSPAG00000000003	upf1	100	89.276	MGP_CAROLIEiJ_G0031142	Upf1	100	89.238	Mus_caroli
ENSSPAG00000000003	upf1	100	89.276	ENSMUSG00000058301	Upf1	100	89.238	Mus_musculus
ENSSPAG00000000003	upf1	100	89.276	MGP_PahariEiJ_G0021607	Upf1	100	89.238	Mus_pahari
ENSSPAG00000000003	upf1	100	89.276	MGP_SPRETEiJ_G0032260	Upf1	100	89.238	Mus_spretus
ENSSPAG00000000003	upf1	100	89.314	ENSMPUG00000015516	UPF1	100	89.375	Mustela_putorius_furo
ENSSPAG00000000003	upf1	99	89.187	ENSMLUG00000012122	UPF1	99	89.247	Myotis_lucifugus
ENSSPAG00000000003	upf1	100	88.173	ENSNGAG00000024107	Upf1	100	88.043	Nannospalax_galili
ENSSPAG00000000003	upf1	100	87.391	ENSNBRG00000022069	-	100	89.922	Neolamprologus_brichardi
ENSSPAG00000000003	upf1	100	92.364	ENSNBRG00000000670	upf1	100	93.455	Neolamprologus_brichardi
ENSSPAG00000000003	upf1	95	84.455	ENSNLEG00000006062	UPF1	99	84.411	Nomascus_leucogenys
ENSSPAG00000000003	upf1	83	87.549	ENSMEUG00000014146	-	83	87.476	Notamacropus_eugenii
ENSSPAG00000000003	upf1	95	84.498	ENSOPRG00000014018	UPF1	99	84.342	Ochotona_princeps
ENSSPAG00000000003	upf1	100	89.408	ENSODEG00000012426	UPF1	100	89.379	Octodon_degus
ENSSPAG00000000003	upf1	100	90.736	ENSONIG00000012729	-	100	90.851	Oreochromis_niloticus
ENSSPAG00000000003	upf1	100	94.519	ENSONIG00000010452	upf1	100	94.519	Oreochromis_niloticus
ENSSPAG00000000003	upf1	100	88.516	ENSOANG00000004568	UPF1	100	88.287	Ornithorhynchus_anatinus
ENSSPAG00000000003	upf1	100	90.670	ENSORLG00000008453	upf1	100	90.489	Oryzias_latipes
ENSSPAG00000000003	upf1	100	90.588	ENSORLG00020014758	upf1	100	90.407	Oryzias_latipes_hni
ENSSPAG00000000003	upf1	100	90.588	ENSORLG00015010165	upf1	100	90.407	Oryzias_latipes_hsok
ENSSPAG00000000003	upf1	100	91.123	ENSOMEG00000003665	upf1	100	91.033	Oryzias_melastigma
ENSSPAG00000000003	upf1	100	89.225	ENSOGAG00000012866	UPF1	100	89.286	Otolemur_garnettii
ENSSPAG00000000003	upf1	96	87.339	ENSOARG00000010739	UPF1	100	87.213	Ovis_aries
ENSSPAG00000000003	upf1	95	90.085	ENSPPAG00000043884	UPF1	96	90.057	Pan_paniscus
ENSSPAG00000000003	upf1	100	88.448	ENSPPRG00000023470	UPF1	100	88.506	Panthera_pardus
ENSSPAG00000000003	upf1	95	89.101	ENSPTIG00000010159	UPF1	99	89.070	Panthera_tigris_altaica
ENSSPAG00000000003	upf1	100	88.899	ENSPTRG00000010721	UPF1	100	88.958	Pan_troglodytes
ENSSPAG00000000003	upf1	100	88.899	ENSPANG00000008847	UPF1	100	88.958	Papio_anubis
ENSSPAG00000000003	upf1	91	93.781	ENSPKIG00000006069	upf1	95	94.422	Paramormyrops_kingsleyae
ENSSPAG00000000003	upf1	71	92.328	ENSPSIG00000009491	UPF1	100	92.298	Pelodiscus_sinensis
ENSSPAG00000000003	upf1	100	90.926	ENSPMGG00000017327	upf1	100	91.033	Periophthalmus_magnuspinnatus
ENSSPAG00000000003	upf1	100	88.496	ENSPEMG00000001085	Upf1	100	88.455	Peromyscus_maniculatus_bairdii
ENSSPAG00000000003	upf1	100	84.788	ENSPMAG00000001206	upf1	100	84.698	Petromyzon_marinus
ENSSPAG00000000003	upf1	100	89.750	ENSPCIG00000006156	UPF1	100	89.812	Phascolarctos_cinereus
ENSSPAG00000000003	upf1	100	91.734	ENSPLAG00000018155	-	100	91.285	Poecilia_latipinna
ENSSPAG00000000003	upf1	100	90.901	ENSPLAG00000016232	-	100	90.628	Poecilia_latipinna
ENSSPAG00000000003	upf1	100	90.818	ENSPMEG00000016319	-	100	90.545	Poecilia_mexicana
ENSSPAG00000000003	upf1	100	92.909	ENSPMEG00000011443	-	100	92.909	Poecilia_mexicana
ENSSPAG00000000003	upf1	100	91.899	ENSPREG00000009940	upf1	100	91.449	Poecilia_reticulata
ENSSPAG00000000003	upf1	100	90.719	ENSPREG00000011247	-	100	90.446	Poecilia_reticulata
ENSSPAG00000000003	upf1	100	83.569	ENSPPYG00000009752	UPF1	100	83.378	Pongo_abelii
ENSSPAG00000000003	upf1	69	98.990	ENSPCAG00000012962	UPF1	66	98.990	Procavia_capensis
ENSSPAG00000000003	upf1	100	88.918	ENSPCOG00000023813	UPF1	100	88.978	Propithecus_coquereli
ENSSPAG00000000003	upf1	67	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSSPAG00000000003	upf1	100	90.645	ENSPNYG00000016731	-	100	90.761	Pundamilia_nyererei
ENSSPAG00000000003	upf1	100	94.054	ENSPNYG00000003694	upf1	100	94.054	Pundamilia_nyererei
ENSSPAG00000000003	upf1	100	92.377	ENSPNAG00000025614	upf1	100	92.747	Pygocentrus_nattereri
ENSSPAG00000000003	upf1	100	89.276	ENSRNOG00000020134	Upf1	100	89.238	Rattus_norvegicus
ENSSPAG00000000003	upf1	95	91.242	ENSRBIG00000013894	UPF1	98	93.764	Rhinopithecus_bieti
ENSSPAG00000000003	upf1	95	90.142	ENSRROG00000040935	UPF1	98	93.764	Rhinopithecus_roxellana
ENSSPAG00000000003	upf1	71	57.963	YMR080C	NAM7	78	57.963	Saccharomyces_cerevisiae
ENSSPAG00000000003	upf1	94	90.133	ENSSBOG00000023632	UPF1	96	90.105	Saimiri_boliviensis_boliviensis
ENSSPAG00000000003	upf1	95	90.445	ENSSHAG00000010499	UPF1	100	90.417	Sarcophilus_harrisii
ENSSPAG00000000003	upf1	100	91.750	ENSSFOG00015021095	upf1	100	92.029	Scleropages_formosus
ENSSPAG00000000003	upf1	100	93.441	ENSSMAG00000005055	upf1	100	93.441	Scophthalmus_maximus
ENSSPAG00000000003	upf1	100	90.835	ENSSMAG00000021018	-	100	90.950	Scophthalmus_maximus
ENSSPAG00000000003	upf1	100	90.926	ENSSDUG00000009629	-	100	91.041	Seriola_dumerili
ENSSPAG00000000003	upf1	100	94.798	ENSSDUG00000013320	upf1	100	94.798	Seriola_dumerili
ENSSPAG00000000003	upf1	100	90.926	ENSSLDG00000006878	-	100	91.041	Seriola_lalandi_dorsalis
ENSSPAG00000000003	upf1	100	95.656	ENSSLDG00000020868	upf1	100	95.656	Seriola_lalandi_dorsalis
ENSSPAG00000000003	upf1	100	89.767	ENSSPUG00000010538	UPF1	100	89.829	Sphenodon_punctatus
ENSSPAG00000000003	upf1	100	89.464	ENSSSCG00000039301	UPF1	99	91.083	Sus_scrofa
ENSSPAG00000000003	upf1	82	84.468	ENSTGUG00000001057	UPF1	100	87.130	Taeniopygia_guttata
ENSSPAG00000000003	upf1	100	92.974	ENSTRUG00000000150	upf1	100	92.792	Takifugu_rubripes
ENSSPAG00000000003	upf1	100	89.900	ENSTRUG00000005131	-	100	89.946	Takifugu_rubripes
ENSSPAG00000000003	upf1	100	85.804	ENSTTRG00000011544	UPF1	100	85.765	Tursiops_truncatus
ENSSPAG00000000003	upf1	100	89.314	ENSUAMG00000007093	UPF1	100	89.375	Ursus_americanus
ENSSPAG00000000003	upf1	99	87.659	ENSUMAG00000006652	UPF1	99	94.301	Ursus_maritimus
ENSSPAG00000000003	upf1	100	89.314	ENSVVUG00000007797	UPF1	100	89.375	Vulpes_vulpes
ENSSPAG00000000003	upf1	100	76.977	ENSXETG00000013602	upf1	100	76.585	Xenopus_tropicalis
ENSSPAG00000000003	upf1	94	91.059	ENSXCOG00000005764	-	99	90.768	Xiphophorus_couchianus
ENSSPAG00000000003	upf1	97	92.257	ENSXCOG00000015275	-	96	92.068	Xiphophorus_couchianus
ENSSPAG00000000003	upf1	100	90.909	ENSXMAG00000002540	-	100	90.636	Xiphophorus_maculatus
ENSSPAG00000000003	upf1	100	92.336	ENSXMAG00000001703	-	100	92.153	Xiphophorus_maculatus