EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSPAG00000000803 (Gene tree)
Gene ID: 103371083
Gene Symbol: prdm1b
Alias: -
Full Name: PR domain zinc finger protein 1-like
Gene Type: protein_coding
Species: Stegastes_partitus
Status: putative
Strand: Minus strand
Length: 7627 bases
Position: chrKK581594.1:127895-135521
Accession: 103371083
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPAP00000001084	zf-C2H2	PF00096.26	1.4e-18	1	3
ENSSPAP00000001084	zf-C2H2	PF00096.26	1.4e-18	2	3
ENSSPAP00000001084	zf-C2H2	PF00096.26	1.4e-18	3	3
ENSSPAP00000001051	zf-C2H2	PF00096.26	2.2e-18	1	3
ENSSPAP00000001051	zf-C2H2	PF00096.26	2.2e-18	2	3
ENSSPAP00000001051	zf-C2H2	PF00096.26	2.2e-18	3	3
ENSSPAP00000001084	zf-met	PF12874.7	7.4e-05	1	1
ENSSPAP00000001051	zf-met	PF12874.7	0.00013	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPAT00000001067	-	3513	XM_008300304	ENSSPAP00000001051	601 (aa)	XP_008298526	UPI0004969C5F
ENSSPAT00000001101	-	1695	-	ENSSPAP00000001084	564 (aa)	-	-

Gene Model

Click here to download ENSSPAG00000000803's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPAG00000000803's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSPAG00000000803	prdm1b	91	38.844	ENSSPAG00000009830	-	72	39.160

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPAG00000000803	prdm1b	68	85.149	ENSAPOG00000022084	prdm1b	88	84.185	Acanthochromis_polyacanthus
ENSSPAG00000000803	prdm1b	93	35.413	ENSACIG00000009747	-	73	57.377	Amphilophus_citrinellus
ENSSPAG00000000803	prdm1b	97	77.944	ENSACIG00000014426	prdm1b	94	78.522	Amphilophus_citrinellus
ENSSPAG00000000803	prdm1b	95	83.624	ENSAOCG00000002230	prdm1b	98	83.595	Amphiprion_ocellaris
ENSSPAG00000000803	prdm1b	100	83.306	ENSAPEG00000019826	prdm1b	100	83.140	Amphiprion_percula
ENSSPAG00000000803	prdm1b	100	81.150	ENSATEG00000006924	prdm1b	100	80.640	Anabas_testudineus
ENSSPAG00000000803	prdm1b	67	61.972	ENSATEG00000021017	prdm1a	56	61.972	Anabas_testudineus
ENSSPAG00000000803	prdm1b	94	81.456	ENSACLG00000005487	prdm1b	90	81.282	Astatotilapia_calliptera
ENSSPAG00000000803	prdm1b	67	59.155	ENSCSEG00000009707	prdm1a	55	59.155	Cynoglossus_semilaevis
ENSSPAG00000000803	prdm1b	99	78.956	ENSCVAG00000016746	prdm1b	99	77.524	Cyprinodon_variegatus
ENSSPAG00000000803	prdm1b	68	61.972	ENSCVAG00000019081	prdm1a	56	61.972	Cyprinodon_variegatus
ENSSPAG00000000803	prdm1b	100	79.221	ENSFHEG00000019848	prdm1b	100	78.734	Fundulus_heteroclitus
ENSSPAG00000000803	prdm1b	97	77.036	ENSGAFG00000016191	prdm1b	93	78.803	Gambusia_affinis
ENSSPAG00000000803	prdm1b	74	64.286	ENSGAFG00000013012	-	55	64.286	Gambusia_affinis
ENSSPAG00000000803	prdm1b	97	69.565	ENSGACG00000002716	prdm1b	86	70.492	Gasterosteus_aculeatus
ENSSPAG00000000803	prdm1b	94	81.913	ENSHBUG00000001475	prdm1b	95	81.739	Haplochromis_burtoni
ENSSPAG00000000803	prdm1b	100	74.116	ENSHCOG00000003617	prdm1b	100	73.558	Hippocampus_comes
ENSSPAG00000000803	prdm1b	88	77.922	ENSIPUG00000013740	prdm1b	70	77.922	Ictalurus_punctatus
ENSSPAG00000000803	prdm1b	58	63.380	ENSKMAG00000017597	prdm1a	58	63.380	Kryptolebias_marmoratus
ENSSPAG00000000803	prdm1b	96	74.229	ENSKMAG00000011218	prdm1b	91	73.252	Kryptolebias_marmoratus
ENSSPAG00000000803	prdm1b	95	38.953	ENSKMAG00000016247	-	73	39.799	Kryptolebias_marmoratus
ENSSPAG00000000803	prdm1b	100	80.922	ENSLBEG00000020955	prdm1b	100	80.286	Labrus_bergylta
ENSSPAG00000000803	prdm1b	80	76.056	ENSLOCG00000004978	prdm1b	63	76.056	Lepisosteus_oculatus
ENSSPAG00000000803	prdm1b	100	79.806	ENSMZEG00005026361	prdm1b	95	79.160	Maylandia_zebra
ENSSPAG00000000803	prdm1b	94	80.207	ENSMMOG00000013458	prdm1b	96	80.034	Mola_mola
ENSSPAG00000000803	prdm1b	97	75.960	ENSMALG00000011410	prdm1b	99	75.793	Monopterus_albus
ENSSPAG00000000803	prdm1b	90	96.104	ENSONIG00000013583	prdm1b	70	96.104	Oreochromis_niloticus
ENSSPAG00000000803	prdm1b	99	70.541	ENSORLG00000010025	prdm1b	99	70.016	Oryzias_latipes
ENSSPAG00000000803	prdm1b	95	72.242	ENSORLG00015009022	prdm1b	92	71.404	Oryzias_latipes_hsok
ENSSPAG00000000803	prdm1b	99	52.057	ENSPKIG00000022335	prdm1b	81	51.939	Paramormyrops_kingsleyae
ENSSPAG00000000803	prdm1b	93	69.052	ENSPFOG00000003103	prdm1b	84	69.982	Poecilia_formosa
ENSSPAG00000000803	prdm1b	99	79.006	ENSPLAG00000018491	prdm1b	99	78.686	Poecilia_latipinna
ENSSPAG00000000803	prdm1b	100	80.968	ENSPMEG00000007869	prdm1b	100	80.645	Poecilia_mexicana
ENSSPAG00000000803	prdm1b	99	79.140	ENSPREG00000011327	prdm1b	99	78.662	Poecilia_reticulata
ENSSPAG00000000803	prdm1b	76	64.789	ENSPVAG00000011732	PRDM1	56	64.789	Pteropus_vampyrus
ENSSPAG00000000803	prdm1b	70	59.155	ENSPNAG00000028442	prdm1a	53	59.155	Pygocentrus_nattereri
ENSSPAG00000000803	prdm1b	96	63.051	ENSSFOG00015021896	prdm1b	77	63.321	Scleropages_formosus
ENSSPAG00000000803	prdm1b	100	79.840	ENSSMAG00000020467	prdm1b	100	79.040	Scophthalmus_maximus
ENSSPAG00000000803	prdm1b	83	57.200	ENSSMAG00000017518	-	61	54.212	Scophthalmus_maximus
ENSSPAG00000000803	prdm1b	95	40.228	ENSSDUG00000000524	-	73	39.500	Seriola_dumerili
ENSSPAG00000000803	prdm1b	100	82.456	ENSSDUG00000020610	prdm1b	100	81.659	Seriola_dumerili
ENSSPAG00000000803	prdm1b	95	38.235	ENSSLDG00000001957	-	73	38.333	Seriola_lalandi_dorsalis
ENSSPAG00000000803	prdm1b	99	82.051	ENSSLDG00000021973	prdm1b	99	81.054	Seriola_lalandi_dorsalis
ENSSPAG00000000803	prdm1b	51	72.000	ENSTNIG00000003926	prdm1a	87	59.184	Tetraodon_nigroviridis
ENSSPAG00000000803	prdm1b	95	80.690	ENSXCOG00000018920	prdm1b	82	80.903	Xiphophorus_couchianus
ENSSPAG00000000803	prdm1b	97	77.482	ENSXMAG00000016765	prdm1b	93	79.012	Xiphophorus_maculatus