EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSPAG00000001023 (Gene tree)
Gene ID: -
Gene Symbol: hfm1
Alias: si:ch211-83f14.5
Full Name: HFM1%2C ATP dependent DNA helicase homolog
Gene Type: protein_coding
Species: Stegastes_partitus
Status: putative
Strand: Minus strand
Length: 14715 bases
Position: chrKK580071.1:990226-1004940
Accession: 103367925
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPAP00000001497	ResIII	PF04851.15	7.9e-11	1	1
ENSSPAP00000001555	ResIII	PF04851.15	6.1e-10	1	1
ENSSPAP00000001497	DEAD	PF00270.29	2.8e-26	1	1
ENSSPAP00000001555	DEAD	PF00270.29	8.1e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPAT00000001585	-	2577	XM_008296158	ENSSPAP00000001555	859 (aa)	XP_008294380	-
ENSSPAT00000001524	-	2967	-	ENSSPAP00000001497	988 (aa)	-	-

Gene Model

Click here to download ENSSPAG00000001023's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPAG00000001023's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSPAG00000001023	hfm1	84	32.055	ENSSPAG00000007677	ascc3	62	32.055
ENSSPAG00000001023	hfm1	87	31.731	ENSSPAG00000001842	snrnp200	71	31.731

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPAG00000001023	hfm1	100	66.787	ENSG00000162669	HFM1	62	66.787	Homo_sapiens
ENSSPAG00000001023	hfm1	100	92.334	ENSAPOG00000005304	hfm1	100	92.334	Acanthochromis_polyacanthus
ENSSPAG00000001023	hfm1	93	67.636	ENSAMEG00000000432	HFM1	68	58.889	Ailuropoda_melanoleuca
ENSSPAG00000001023	hfm1	91	86.436	ENSACIG00000021553	hfm1	93	77.228	Amphilophus_citrinellus
ENSSPAG00000001023	hfm1	100	93.364	ENSAOCG00000022839	hfm1	100	93.364	Amphiprion_ocellaris
ENSSPAG00000001023	hfm1	100	92.907	ENSAPEG00000014316	hfm1	100	92.907	Amphiprion_percula
ENSSPAG00000001023	hfm1	93	87.167	ENSATEG00000019181	hfm1	93	70.538	Anabas_testudineus
ENSSPAG00000001023	hfm1	96	64.896	ENSAPLG00000013639	HFM1	64	62.061	Anas_platyrhynchos
ENSSPAG00000001023	hfm1	100	65.269	ENSANAG00000029513	HFM1	63	65.269	Aotus_nancymaae
ENSSPAG00000001023	hfm1	99	82.517	ENSACLG00000009033	hfm1	100	82.517	Astatotilapia_calliptera
ENSSPAG00000001023	hfm1	99	76.271	ENSAMXG00000006108	hfm1	61	76.271	Astyanax_mexicanus
ENSSPAG00000001023	hfm1	96	65.233	ENSBTAG00000020856	HFM1	68	58.770	Bos_taurus
ENSSPAG00000001023	hfm1	100	65.947	ENSCJAG00000001843	HFM1	62	65.947	Callithrix_jacchus
ENSSPAG00000001023	hfm1	95	66.114	ENSCAFG00000020187	HFM1	68	58.158	Canis_familiaris
ENSSPAG00000001023	hfm1	100	65.273	ENSTSYG00000014250	HFM1	64	65.273	Carlito_syrichta
ENSSPAG00000001023	hfm1	94	66.067	ENSCPOG00000007421	HFM1	70	57.937	Cavia_porcellus
ENSSPAG00000001023	hfm1	96	64.678	ENSCCAG00000033206	HFM1	66	60.379	Cebus_capucinus
ENSSPAG00000001023	hfm1	100	66.307	ENSCATG00000030987	HFM1	62	66.307	Cercocebus_atys
ENSSPAG00000001023	hfm1	95	66.948	ENSCLAG00000005173	HFM1	64	59.431	Chinchilla_lanigera
ENSSPAG00000001023	hfm1	78	51.748	ENSCSAVG00000005094	-	100	51.748	Ciona_savignyi
ENSSPAG00000001023	hfm1	90	64.384	ENSCGRG00001016995	Hfm1	70	56.663	Cricetulus_griseus_chok1gshd
ENSSPAG00000001023	hfm1	94	65.468	ENSCGRG00000017181	Hfm1	69	57.533	Cricetulus_griseus_crigri
ENSSPAG00000001023	hfm1	93	82.160	ENSCSEG00000017659	hfm1	92	70.600	Cynoglossus_semilaevis
ENSSPAG00000001023	hfm1	80	81.549	ENSCVAG00000005075	hfm1	86	81.549	Cyprinodon_variegatus
ENSSPAG00000001023	hfm1	100	74.142	ENSDARG00000104288	hfm1	81	74.142	Danio_rerio
ENSSPAG00000001023	hfm1	100	65.468	ENSDNOG00000004776	HFM1	61	61.111	Dasypus_novemcinctus
ENSSPAG00000001023	hfm1	94	64.160	ENSDORG00000014661	Hfm1	66	58.282	Dipodomys_ordii
ENSSPAG00000001023	hfm1	50	62.471	ENSEBUG00000006133	-	88	65.823	Eptatretus_burgeri
ENSSPAG00000001023	hfm1	90	67.166	ENSEASG00005015424	HFM1	95	60.632	Equus_asinus_asinus
ENSSPAG00000001023	hfm1	95	66.509	ENSECAG00000024039	HFM1	64	60.274	Equus_caballus
ENSSPAG00000001023	hfm1	100	80.930	ENSELUG00000018944	hfm1	98	80.930	Esox_lucius
ENSSPAG00000001023	hfm1	96	65.930	ENSFCAG00000029116	HFM1	70	58.325	Felis_catus
ENSSPAG00000001023	hfm1	94	66.667	ENSFALG00000001781	HFM1	64	62.239	Ficedula_albicollis
ENSSPAG00000001023	hfm1	94	66.067	ENSFDAG00000020816	HFM1	64	59.727	Fukomys_damarensis
ENSSPAG00000001023	hfm1	93	74.515	ENSGMOG00000017436	hfm1	96	68.662	Gadus_morhua
ENSSPAG00000001023	hfm1	99	83.875	ENSGAFG00000018093	hfm1	100	83.875	Gambusia_affinis
ENSSPAG00000001023	hfm1	93	80.825	ENSGACG00000015686	hfm1	95	72.993	Gasterosteus_aculeatus
ENSSPAG00000001023	hfm1	100	66.787	ENSGGOG00000038524	HFM1	62	66.787	Gorilla_gorilla
ENSSPAG00000001023	hfm1	93	83.879	ENSHBUG00000007309	hfm1	94	75.551	Haplochromis_burtoni
ENSSPAG00000001023	hfm1	99	80.330	ENSHCOG00000019632	hfm1	100	80.330	Hippocampus_comes
ENSSPAG00000001023	hfm1	99	74.799	ENSIPUG00000017020	hfm1	98	74.799	Ictalurus_punctatus
ENSSPAG00000001023	hfm1	96	63.827	ENSJJAG00000017198	Hfm1	67	59.009	Jaculus_jaculus
ENSSPAG00000001023	hfm1	92	83.721	ENSKMAG00000002282	hfm1	84	83.721	Kryptolebias_marmoratus
ENSSPAG00000001023	hfm1	100	84.051	ENSLBEG00000006759	hfm1	99	84.051	Labrus_bergylta
ENSSPAG00000001023	hfm1	93	68.510	ENSLACG00000010698	HFM1	87	62.095	Latimeria_chalumnae
ENSSPAG00000001023	hfm1	96	71.362	ENSLOCG00000004931	hfm1	92	63.719	Lepisosteus_oculatus
ENSSPAG00000001023	hfm1	78	66.428	ENSLAFG00000015903	-	93	66.428	Loxodonta_africana
ENSSPAG00000001023	hfm1	100	64.062	ENSMFAG00000003649	HFM1	62	64.062	Macaca_fascicularis
ENSSPAG00000001023	hfm1	100	66.307	ENSMMUG00000006819	HFM1	62	66.307	Macaca_mulatta
ENSSPAG00000001023	hfm1	99	84.070	ENSMAMG00000004623	hfm1	100	84.070	Mastacembelus_armatus
ENSSPAG00000001023	hfm1	99	82.517	ENSMZEG00005004679	hfm1	100	82.517	Maylandia_zebra
ENSSPAG00000001023	hfm1	86	65.405	ENSMGAG00000008437	HFM1	95	65.405	Meleagris_gallopavo
ENSSPAG00000001023	hfm1	94	65.066	ENSMAUG00000018858	Hfm1	69	57.013	Mesocricetus_auratus
ENSSPAG00000001023	hfm1	95	65.603	ENSMICG00000037935	HFM1	68	58.603	Microcebus_murinus
ENSSPAG00000001023	hfm1	94	65.546	ENSMOCG00000014812	Hfm1	69	57.937	Microtus_ochrogaster
ENSSPAG00000001023	hfm1	100	87.269	ENSMMOG00000006148	hfm1	99	87.269	Mola_mola
ENSSPAG00000001023	hfm1	100	88.140	ENSMALG00000002401	hfm1	100	88.140	Monopterus_albus
ENSSPAG00000001023	hfm1	86	74.257	MGP_CAROLIEiJ_G0027496	Hfm1	61	74.257	Mus_caroli
ENSSPAG00000001023	hfm1	94	64.946	ENSMUSG00000043410	Hfm1	69	57.460	Mus_musculus
ENSSPAG00000001023	hfm1	94	65.066	MGP_PahariEiJ_G0017268	Hfm1	69	57.114	Mus_pahari
ENSSPAG00000001023	hfm1	94	65.426	MGP_SPRETEiJ_G0028495	Hfm1	69	57.560	Mus_spretus
ENSSPAG00000001023	hfm1	95	66.391	ENSMPUG00000004594	HFM1	64	60.168	Mustela_putorius_furo
ENSSPAG00000001023	hfm1	94	66.427	ENSMLUG00000010200	HFM1	65	60.485	Myotis_lucifugus
ENSSPAG00000001023	hfm1	99	82.284	ENSNBRG00000002910	hfm1	100	82.284	Neolamprologus_brichardi
ENSSPAG00000001023	hfm1	100	65.186	ENSNLEG00000010285	HFM1	62	65.186	Nomascus_leucogenys
ENSSPAG00000001023	hfm1	86	66.234	ENSMEUG00000015788	HFM1	54	65.926	Notamacropus_eugenii
ENSSPAG00000001023	hfm1	96	60.465	ENSOPRG00000013916	HFM1	60	60.465	Ochotona_princeps
ENSSPAG00000001023	hfm1	93	84.236	ENSONIG00000010590	hfm1	95	73.212	Oreochromis_niloticus
ENSSPAG00000001023	hfm1	92	84.351	ENSORLG00000026844	hfm1	100	84.351	Oryzias_latipes
ENSSPAG00000001023	hfm1	100	70.519	ENSORLG00020002951	hfm1	71	70.519	Oryzias_latipes_hni
ENSSPAG00000001023	hfm1	100	79.741	ENSOMEG00000016474	hfm1	63	79.741	Oryzias_melastigma
ENSSPAG00000001023	hfm1	94	66.347	ENSOGAG00000032369	HFM1	76	60.490	Otolemur_garnettii
ENSSPAG00000001023	hfm1	96	65.233	ENSOARG00000015812	HFM1	69	58.669	Ovis_aries
ENSSPAG00000001023	hfm1	100	67.026	ENSPPAG00000024582	HFM1	67	67.026	Pan_paniscus
ENSSPAG00000001023	hfm1	96	65.930	ENSPPRG00000003270	HFM1	70	58.465	Panthera_pardus
ENSSPAG00000001023	hfm1	96	65.930	ENSPTIG00000018881	HFM1	70	58.563	Panthera_tigris_altaica
ENSSPAG00000001023	hfm1	100	66.906	ENSPTRG00000000948	HFM1	62	66.906	Pan_troglodytes
ENSSPAG00000001023	hfm1	100	66.187	ENSPANG00000009838	HFM1	62	66.187	Papio_anubis
ENSSPAG00000001023	hfm1	98	72.281	ENSPKIG00000003810	hfm1	99	72.281	Paramormyrops_kingsleyae
ENSSPAG00000001023	hfm1	93	81.328	ENSPMGG00000011059	hfm1	99	81.328	Periophthalmus_magnuspinnatus
ENSSPAG00000001023	hfm1	94	65.426	ENSPEMG00000022852	Hfm1	69	57.619	Peromyscus_maniculatus_bairdii
ENSSPAG00000001023	hfm1	95	65.152	ENSPCIG00000014233	HFM1	66	58.684	Phascolarctos_cinereus
ENSSPAG00000001023	hfm1	93	82.909	ENSPFOG00000017194	hfm1	98	71.193	Poecilia_formosa
ENSSPAG00000001023	hfm1	93	82.809	ENSPLAG00000000571	hfm1	92	73.576	Poecilia_latipinna
ENSSPAG00000001023	hfm1	93	82.930	ENSPMEG00000019475	hfm1	92	74.041	Poecilia_mexicana
ENSSPAG00000001023	hfm1	99	83.721	ENSPREG00000007803	hfm1	100	83.721	Poecilia_reticulata
ENSSPAG00000001023	hfm1	100	66.787	ENSPPYG00000001163	HFM1	62	66.787	Pongo_abelii
ENSSPAG00000001023	hfm1	85	72.667	ENSPVAG00000009713	HFM1	63	72.667	Pteropus_vampyrus
ENSSPAG00000001023	hfm1	99	82.189	ENSPNYG00000001795	hfm1	100	82.189	Pundamilia_nyererei
ENSSPAG00000001023	hfm1	99	77.903	ENSPNAG00000010865	hfm1	88	77.903	Pygocentrus_nattereri
ENSSPAG00000001023	hfm1	94	65.306	ENSRNOG00000023299	Hfm1	69	57.619	Rattus_norvegicus
ENSSPAG00000001023	hfm1	100	66.187	ENSRROG00000045569	HFM1	62	66.187	Rhinopithecus_roxellana
ENSSPAG00000001023	hfm1	95	65.599	ENSSBOG00000027456	HFM1	67	60.063	Saimiri_boliviensis_boliviensis
ENSSPAG00000001023	hfm1	66	67.399	ENSSHAG00000014616	-	67	67.399	Sarcophilus_harrisii
ENSSPAG00000001023	hfm1	100	75.000	ENSSFOG00015020129	hfm1	59	75.000	Scleropages_formosus
ENSSPAG00000001023	hfm1	93	86.007	ENSSMAG00000006907	hfm1	81	86.007	Scophthalmus_maximus
ENSSPAG00000001023	hfm1	100	88.941	ENSSDUG00000011424	hfm1	100	88.941	Seriola_dumerili
ENSSPAG00000001023	hfm1	100	87.715	ENSSLDG00000016386	hfm1	100	87.715	Seriola_lalandi_dorsalis
ENSSPAG00000001023	hfm1	95	66.746	ENSSSCG00000006912	HFM1	69	60.526	Sus_scrofa
ENSSPAG00000001023	hfm1	93	66.747	ENSTGUG00000006172	HFM1	96	61.505	Taeniopygia_guttata
ENSSPAG00000001023	hfm1	55	81.607	ENSTNIG00000006962	hfm1	97	81.607	Tetraodon_nigroviridis
ENSSPAG00000001023	hfm1	95	65.917	ENSTTRG00000013933	HFM1	69	59.169	Tursiops_truncatus
ENSSPAG00000001023	hfm1	94	64.508	ENSVPAG00000011331	HFM1	69	57.013	Vicugna_pacos
ENSSPAG00000001023	hfm1	91	66.419	ENSVVUG00000020760	HFM1	90	62.500	Vulpes_vulpes
ENSSPAG00000001023	hfm1	99	83.218	ENSXMAG00000004178	hfm1	100	83.218	Xiphophorus_maculatus