EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSPAG00000001921 (Gene tree)
Gene ID: 103358246
Gene Symbol: pspc1
Alias: fj85a06|wu:fj85a06|zgc:136470
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Stegastes_partitus
Status: putative
Strand: Minus strand
Length: 11448 bases
Position: chrKK580369.1:424721-436168
Accession: 103358246
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPAP00000002503	RRM_1	PF00076.22	1.3e-32	1	2
ENSSPAP00000002503	RRM_1	PF00076.22	1.3e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPAT00000002541	-	3054	XM_008283142	ENSSPAP00000002503	530 (aa)	XP_008281364	UPI0004960C51

Gene Model

Click here to download ENSSPAG00000001921's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPAG00000001921's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSPAG00000001921	pspc1	72	61.757	ENSSPAG00000012663	nono	86	59.553
ENSSPAG00000001921	pspc1	75	57.767	ENSSPAG00000016550	sfpq	53	64.035

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPAG00000001921	pspc1	77	72.791	ENSG00000121390	PSPC1	82	80.864	Homo_sapiens
ENSSPAG00000001921	pspc1	100	93.019	ENSAPOG00000015946	pspc1	100	93.019	Acanthochromis_polyacanthus
ENSSPAG00000001921	pspc1	82	70.678	ENSAMEG00000017420	PSPC1	88	69.278	Ailuropoda_melanoleuca
ENSSPAG00000001921	pspc1	100	78.113	ENSACIG00000018695	pspc1	100	77.170	Amphilophus_citrinellus
ENSSPAG00000001921	pspc1	100	93.396	ENSAOCG00000005279	pspc1	100	93.774	Amphiprion_ocellaris
ENSSPAG00000001921	pspc1	100	92.830	ENSAPEG00000015927	pspc1	100	93.208	Amphiprion_percula
ENSSPAG00000001921	pspc1	100	76.679	ENSATEG00000004878	pspc1	100	74.813	Anabas_testudineus
ENSSPAG00000001921	pspc1	64	73.164	ENSAPLG00000006246	PSPC1	100	66.357	Anas_platyrhynchos
ENSSPAG00000001921	pspc1	69	65.782	ENSAPLG00000003643	SFPQ	81	58.756	Anas_platyrhynchos
ENSSPAG00000001921	pspc1	65	60.056	ENSACAG00000013307	-	62	56.235	Anolis_carolinensis
ENSSPAG00000001921	pspc1	89	65.984	ENSACAG00000002093	PSPC1	89	67.276	Anolis_carolinensis
ENSSPAG00000001921	pspc1	81	70.917	ENSANAG00000000059	PSPC1	87	75.811	Aotus_nancymaae
ENSSPAG00000001921	pspc1	100	76.648	ENSACLG00000027220	pspc1	100	76.217	Astatotilapia_calliptera
ENSSPAG00000001921	pspc1	100	66.606	ENSAMXG00000036881	pspc1	100	66.787	Astyanax_mexicanus
ENSSPAG00000001921	pspc1	95	63.415	ENSBTAG00000003934	PSPC1	92	67.400	Bos_taurus
ENSSPAG00000001921	pspc1	81	70.917	ENSCJAG00000004554	PSPC1	91	67.600	Callithrix_jacchus
ENSSPAG00000001921	pspc1	77	73.256	ENSCAFG00020002009	PSPC1	87	78.466	Canis_lupus_dingo
ENSSPAG00000001921	pspc1	95	63.415	ENSCHIG00000016708	PSPC1	92	67.400	Capra_hircus
ENSSPAG00000001921	pspc1	76	60.047	ENSTSYG00000032882	PSPC1	88	60.941	Carlito_syrichta
ENSSPAG00000001921	pspc1	77	72.791	ENSCPOG00000000395	PSPC1	87	78.466	Cavia_porcellus
ENSSPAG00000001921	pspc1	81	70.917	ENSCCAG00000033498	PSPC1	91	67.800	Cebus_capucinus
ENSSPAG00000001921	pspc1	77	72.558	ENSCATG00000036434	PSPC1	94	78.171	Cercocebus_atys
ENSSPAG00000001921	pspc1	66	73.098	ENSCLAG00000005241	PSPC1	89	68.085	Chinchilla_lanigera
ENSSPAG00000001921	pspc1	81	66.592	ENSCHOG00000008913	PSPC1	90	64.706	Choloepus_hoffmanni
ENSSPAG00000001921	pspc1	76	73.095	ENSCPBG00000020859	PSPC1	90	67.203	Chrysemys_picta_bellii
ENSSPAG00000001921	pspc1	55	59.794	ENSCSAVG00000003533	-	53	61.151	Ciona_savignyi
ENSSPAG00000001921	pspc1	67	60.160	ENSCANG00000018948	PSPC1	87	82.443	Colobus_angolensis_palliatus
ENSSPAG00000001921	pspc1	86	67.932	ENSCGRG00001018368	Pspc1	88	68.866	Cricetulus_griseus_chok1gshd
ENSSPAG00000001921	pspc1	86	67.932	ENSCGRG00000011724	Pspc1	88	68.866	Cricetulus_griseus_crigri
ENSSPAG00000001921	pspc1	100	76.460	ENSCVAG00000007679	-	100	76.460	Cyprinodon_variegatus
ENSSPAG00000001921	pspc1	100	62.316	ENSDARG00000006621	pspc1	100	67.711	Danio_rerio
ENSSPAG00000001921	pspc1	89	66.599	ENSDNOG00000011078	PSPC1	96	64.325	Dasypus_novemcinctus
ENSSPAG00000001921	pspc1	82	67.692	ENSDORG00000016050	Pspc1	90	65.455	Dipodomys_ordii
ENSSPAG00000001921	pspc1	55	76.238	ENSETEG00000000502	-	72	76.238	Echinops_telfairi
ENSSPAG00000001921	pspc1	61	43.020	ENSEBUG00000010133	pspc1	79	44.371	Eptatretus_burgeri
ENSSPAG00000001921	pspc1	77	61.446	ENSEBUG00000003964	-	64	65.922	Eptatretus_burgeri
ENSSPAG00000001921	pspc1	88	67.010	ENSEASG00005000119	PSPC1	84	80.122	Equus_asinus_asinus
ENSSPAG00000001921	pspc1	88	67.010	ENSECAG00000017286	PSPC1	84	80.122	Equus_caballus
ENSSPAG00000001921	pspc1	100	67.329	ENSELUG00000003746	pspc1	100	68.545	Esox_lucius
ENSSPAG00000001921	pspc1	77	73.023	ENSFCAG00000027841	PSPC1	83	80.864	Felis_catus
ENSSPAG00000001921	pspc1	77	72.577	ENSFALG00000008750	PSPC1	89	66.934	Ficedula_albicollis
ENSSPAG00000001921	pspc1	85	69.017	ENSFDAG00000002617	PSPC1	90	69.072	Fukomys_damarensis
ENSSPAG00000001921	pspc1	100	63.704	ENSGMOG00000015074	pspc1	100	64.074	Gadus_morhua
ENSSPAG00000001921	pspc1	75	73.786	ENSGALG00000017142	PSPC1	90	67.002	Gallus_gallus
ENSSPAG00000001921	pspc1	73	80.612	ENSGAFG00000006327	pspc1	81	80.612	Gambusia_affinis
ENSSPAG00000001921	pspc1	100	74.672	ENSGACG00000014901	pspc1	98	79.564	Gasterosteus_aculeatus
ENSSPAG00000001921	pspc1	69	65.583	ENSGAGG00000017325	-	65	58.548	Gopherus_agassizii
ENSSPAG00000001921	pspc1	76	73.095	ENSGAGG00000019164	PSPC1	90	67.203	Gopherus_agassizii
ENSSPAG00000001921	pspc1	77	72.791	ENSGGOG00000003414	PSPC1	82	80.864	Gorilla_gorilla
ENSSPAG00000001921	pspc1	100	85.472	ENSHBUG00000001139	pspc1	100	86.226	Haplochromis_burtoni
ENSSPAG00000001921	pspc1	85	69.002	ENSHGLG00000018811	PSPC1	89	69.072	Heterocephalus_glaber_female
ENSSPAG00000001921	pspc1	57	77.228	ENSHGLG00100007962	PSPC1	92	77.741	Heterocephalus_glaber_male
ENSSPAG00000001921	pspc1	78	78.313	ENSHCOG00000013251	pspc1	99	73.497	Hippocampus_comes
ENSSPAG00000001921	pspc1	100	68.877	ENSIPUG00000013192	pspc1	100	69.891	Ictalurus_punctatus
ENSSPAG00000001921	pspc1	91	65.936	ENSSTOG00000026833	PSPC1	86	78.761	Ictidomys_tridecemlineatus
ENSSPAG00000001921	pspc1	77	72.558	ENSJJAG00000018334	Pspc1	88	68.660	Jaculus_jaculus
ENSSPAG00000001921	pspc1	100	62.172	ENSKMAG00000013525	-	98	73.521	Kryptolebias_marmoratus
ENSSPAG00000001921	pspc1	99	81.461	ENSLBEG00000004474	pspc1	100	82.732	Labrus_bergylta
ENSSPAG00000001921	pspc1	90	64.729	ENSLACG00000010762	PSPC1	88	67.485	Latimeria_chalumnae
ENSSPAG00000001921	pspc1	91	69.697	ENSLOCG00000010832	pspc1	99	66.126	Lepisosteus_oculatus
ENSSPAG00000001921	pspc1	82	70.419	ENSLAFG00000010968	PSPC1	88	69.072	Loxodonta_africana
ENSSPAG00000001921	pspc1	77	72.558	ENSMFAG00000032728	PSPC1	96	77.907	Macaca_fascicularis
ENSSPAG00000001921	pspc1	77	72.558	ENSMMUG00000020262	PSPC1	93	77.843	Macaca_mulatta
ENSSPAG00000001921	pspc1	77	72.558	ENSMNEG00000027401	PSPC1	89	73.460	Macaca_nemestrina
ENSSPAG00000001921	pspc1	66	72.283	ENSMLEG00000039043	PSPC1	94	68.085	Mandrillus_leucophaeus
ENSSPAG00000001921	pspc1	100	84.369	ENSMAMG00000004333	pspc1	100	84.181	Mastacembelus_armatus
ENSSPAG00000001921	pspc1	100	76.648	ENSMZEG00005005726	pspc1	100	76.217	Maylandia_zebra
ENSSPAG00000001921	pspc1	65	72.829	ENSMGAG00000015134	PSPC1	100	66.282	Meleagris_gallopavo
ENSSPAG00000001921	pspc1	82	65.324	ENSMAUG00000021067	Pspc1	86	67.734	Mesocricetus_auratus
ENSSPAG00000001921	pspc1	88	68.866	ENSMICG00000013970	PSPC1	83	80.864	Microcebus_murinus
ENSSPAG00000001921	pspc1	86	67.715	ENSMOCG00000006060	Pspc1	90	67.879	Microtus_ochrogaster
ENSSPAG00000001921	pspc1	79	89.286	ENSMMOG00000004352	pspc1	71	89.286	Mola_mola
ENSSPAG00000001921	pspc1	75	75.912	ENSMODG00000008029	PSPC1	66	76.156	Monodelphis_domestica
ENSSPAG00000001921	pspc1	100	82.830	ENSMALG00000008914	pspc1	100	82.830	Monopterus_albus
ENSSPAG00000001921	pspc1	80	71.954	MGP_CAROLIEiJ_G0019341	Pspc1	88	74.396	Mus_caroli
ENSSPAG00000001921	pspc1	82	69.824	ENSMUSG00000021938	Pspc1	88	74.396	Mus_musculus
ENSSPAG00000001921	pspc1	93	64.440	MGP_PahariEiJ_G0030359	Pspc1	88	74.396	Mus_pahari
ENSSPAG00000001921	pspc1	82	69.824	MGP_SPRETEiJ_G0020232	Pspc1	88	74.396	Mus_spretus
ENSSPAG00000001921	pspc1	77	73.256	ENSMPUG00000013347	PSPC1	88	69.278	Mustela_putorius_furo
ENSSPAG00000001921	pspc1	88	66.598	ENSMLUG00000017663	PSPC1	89	68.443	Myotis_lucifugus
ENSSPAG00000001921	pspc1	93	66.339	ENSNGAG00000011271	Pspc1	88	68.454	Nannospalax_galili
ENSSPAG00000001921	pspc1	73	83.033	ENSNBRG00000014059	pspc1	92	80.457	Neolamprologus_brichardi
ENSSPAG00000001921	pspc1	77	72.791	ENSNLEG00000001294	PSPC1	88	69.072	Nomascus_leucogenys
ENSSPAG00000001921	pspc1	65	71.090	ENSMEUG00000000476	PSPC1	72	75.258	Notamacropus_eugenii
ENSSPAG00000001921	pspc1	73	69.479	ENSODEG00000019012	-	91	63.200	Octodon_degus
ENSSPAG00000001921	pspc1	88	59.016	ENSODEG00000007817	-	91	57.312	Octodon_degus
ENSSPAG00000001921	pspc1	100	86.604	ENSONIG00000012010	pspc1	99	87.358	Oreochromis_niloticus
ENSSPAG00000001921	pspc1	78	58.314	ENSOANG00000011381	-	88	56.982	Ornithorhynchus_anatinus
ENSSPAG00000001921	pspc1	66	71.739	ENSOANG00000009017	-	100	67.371	Ornithorhynchus_anatinus
ENSSPAG00000001921	pspc1	77	72.430	ENSOCUG00000006153	PSPC1	91	67.400	Oryctolagus_cuniculus
ENSSPAG00000001921	pspc1	100	78.008	ENSORLG00000004232	-	100	77.632	Oryzias_latipes
ENSSPAG00000001921	pspc1	100	78.383	ENSORLG00020000578	PSPC1	100	76.173	Oryzias_latipes_hni
ENSSPAG00000001921	pspc1	100	78.571	ENSORLG00015017480	pspc1	100	78.195	Oryzias_latipes_hsok
ENSSPAG00000001921	pspc1	81	71.141	ENSOGAG00000012643	PSPC1	91	67.465	Otolemur_garnettii
ENSSPAG00000001921	pspc1	87	66.667	ENSOARG00000014163	PSPC1	95	68.323	Ovis_aries
ENSSPAG00000001921	pspc1	77	66.279	ENSPPAG00000009836	PSPC1	92	80.864	Pan_paniscus
ENSSPAG00000001921	pspc1	77	73.023	ENSPPRG00000008833	PSPC1	88	69.072	Panthera_pardus
ENSSPAG00000001921	pspc1	66	72.554	ENSPTIG00000016917	PSPC1	84	68.085	Panthera_tigris_altaica
ENSSPAG00000001921	pspc1	75	75.182	ENSPTRG00000005677	PSPC1	82	80.864	Pan_troglodytes
ENSSPAG00000001921	pspc1	77	72.558	ENSPANG00000001992	PSPC1	93	78.235	Papio_anubis
ENSSPAG00000001921	pspc1	100	67.956	ENSPKIG00000003578	pspc1	100	69.581	Paramormyrops_kingsleyae
ENSSPAG00000001921	pspc1	78	71.395	ENSPSIG00000005168	PSPC1	91	66.004	Pelodiscus_sinensis
ENSSPAG00000001921	pspc1	67	77.159	ENSPMGG00000015135	pspc1	98	76.056	Periophthalmus_magnuspinnatus
ENSSPAG00000001921	pspc1	82	69.978	ENSPEMG00000015214	Pspc1	90	68.081	Peromyscus_maniculatus_bairdii
ENSSPAG00000001921	pspc1	54	43.537	ENSPMAG00000004618	pspc1	84	43.885	Petromyzon_marinus
ENSSPAG00000001921	pspc1	82	71.053	ENSPCIG00000017680	PSPC1	88	69.485	Phascolarctos_cinereus
ENSSPAG00000001921	pspc1	99	78.531	ENSPFOG00000003362	pspc1	100	79.473	Poecilia_formosa
ENSSPAG00000001921	pspc1	80	52.727	ENSPLAG00000004407	-	53	56.878	Poecilia_latipinna
ENSSPAG00000001921	pspc1	100	78.545	ENSPLAG00000011540	pspc1	100	79.478	Poecilia_latipinna
ENSSPAG00000001921	pspc1	100	78.172	ENSPMEG00000008322	pspc1	100	79.104	Poecilia_mexicana
ENSSPAG00000001921	pspc1	79	53.917	ENSPMEG00000001025	-	52	57.407	Poecilia_mexicana
ENSSPAG00000001921	pspc1	100	77.799	ENSPREG00000007786	pspc1	100	78.731	Poecilia_reticulata
ENSSPAG00000001921	pspc1	77	72.791	ENSPPYG00000005186	PSPC1	85	75.931	Pongo_abelii
ENSSPAG00000001921	pspc1	91	63.546	ENSPCOG00000014364	PSPC1	88	66.242	Propithecus_coquereli
ENSSPAG00000001921	pspc1	88	67.556	ENSPVAG00000005036	PSPC1	92	66.270	Pteropus_vampyrus
ENSSPAG00000001921	pspc1	100	77.024	ENSPNYG00000008893	pspc1	100	76.592	Pundamilia_nyererei
ENSSPAG00000001921	pspc1	100	69.131	ENSPNAG00000016511	pspc1	100	70.092	Pygocentrus_nattereri
ENSSPAG00000001921	pspc1	82	69.690	ENSRNOG00000020782	Pspc1	88	74.576	Rattus_norvegicus
ENSSPAG00000001921	pspc1	82	70.241	ENSRBIG00000036057	PSPC1	95	78.171	Rhinopithecus_bieti
ENSSPAG00000001921	pspc1	82	70.241	ENSRROG00000036334	PSPC1	86	78.171	Rhinopithecus_roxellana
ENSSPAG00000001921	pspc1	79	56.979	ENSSBOG00000028172	PSPC1	90	78.623	Saimiri_boliviensis_boliviensis
ENSSPAG00000001921	pspc1	82	66.157	ENSSHAG00000004696	PSPC1	88	64.887	Sarcophilus_harrisii
ENSSPAG00000001921	pspc1	88	73.739	ENSSFOG00015001395	pspc1	99	75.676	Scleropages_formosus
ENSSPAG00000001921	pspc1	100	83.210	ENSSMAG00000001761	pspc1	100	82.841	Scophthalmus_maximus
ENSSPAG00000001921	pspc1	100	87.407	ENSSDUG00000010651	pspc1	100	89.259	Seriola_dumerili
ENSSPAG00000001921	pspc1	100	76.271	ENSSLDG00000004284	pspc1	100	74.627	Seriola_lalandi_dorsalis
ENSSPAG00000001921	pspc1	77	67.209	ENSSARG00000000888	PSPC1	89	63.299	Sorex_araneus
ENSSPAG00000001921	pspc1	88	59.149	ENSSPUG00000008550	PSPC1	88	57.796	Sphenodon_punctatus
ENSSPAG00000001921	pspc1	75	54.591	ENSSPUG00000001136	-	59	52.109	Sphenodon_punctatus
ENSSPAG00000001921	pspc1	77	72.791	ENSSSCG00000009569	PSPC1	88	77.778	Sus_scrofa
ENSSPAG00000001921	pspc1	75	73.608	ENSTGUG00000011295	PSPC1	99	67.689	Taeniopygia_guttata
ENSSPAG00000001921	pspc1	100	73.635	ENSTRUG00000011335	pspc1	100	73.258	Takifugu_rubripes
ENSSPAG00000001921	pspc1	100	73.962	ENSTNIG00000010358	pspc1	100	73.962	Tetraodon_nigroviridis
ENSSPAG00000001921	pspc1	88	59.368	ENSTBEG00000002361	PSPC1	88	59.129	Tupaia_belangeri
ENSSPAG00000001921	pspc1	86	68.134	ENSTTRG00000003343	PSPC1	90	68.635	Tursiops_truncatus
ENSSPAG00000001921	pspc1	63	72.271	ENSUAMG00000012309	PSPC1	82	80.769	Ursus_americanus
ENSSPAG00000001921	pspc1	82	70.460	ENSUMAG00000013993	PSPC1	91	80.556	Ursus_maritimus
ENSSPAG00000001921	pspc1	76	65.721	ENSVPAG00000010029	PSPC1	100	67.849	Vicugna_pacos
ENSSPAG00000001921	pspc1	77	73.256	ENSVVUG00000006414	PSPC1	88	78.466	Vulpes_vulpes
ENSSPAG00000001921	pspc1	73	81.122	ENSXCOG00000017438	pspc1	93	81.122	Xiphophorus_couchianus
ENSSPAG00000001921	pspc1	73	81.378	ENSXMAG00000007929	pspc1	93	81.378	Xiphophorus_maculatus