EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSPAG00000003742 (Gene tree)
Gene ID: 103372841
Gene Symbol: smarcal1
Alias: im:7145331|si:ch211-239d11.1
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Stegastes_partitus
Status: putative
Strand: Minus strand
Length: 12532 bases
Position: chrKK581913.1:46067-58598
Accession: 103372841
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPAP00000004936	ResIII	PF04851.15	2.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPAT00000005032	-	2352	XM_008302584	ENSSPAP00000004936	783 (aa)	XP_008300806	-

Gene Model

Click here to download ENSSPAG00000003742's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPAG00000003742's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSPAG00000003742	smarcal1	55	43.875	ENSSPAG00000004802	zranb3	92	38.889

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPAG00000003742	smarcal1	82	63.396	ENSG00000138375	SMARCAL1	99	67.081	Homo_sapiens
ENSSPAG00000003742	smarcal1	99	83.137	ENSAPOG00000020156	SMARCAL1	93	83.117	Acanthochromis_polyacanthus
ENSSPAG00000003742	smarcal1	100	84.547	ENSACIG00000001500	smarcal1	98	84.547	Amphilophus_citrinellus
ENSSPAG00000003742	smarcal1	99	83.117	ENSAOCG00000014266	SMARCAL1	94	82.881	Amphiprion_ocellaris
ENSSPAG00000003742	smarcal1	99	83.608	ENSAPEG00000015861	SMARCAL1	92	93.583	Amphiprion_percula
ENSSPAG00000003742	smarcal1	97	88.445	ENSATEG00000020624	SMARCAL1	84	87.767	Anabas_testudineus
ENSSPAG00000003742	smarcal1	85	64.487	ENSAPLG00000009864	SMARCAL1	69	64.487	Anas_platyrhynchos
ENSSPAG00000003742	smarcal1	90	62.376	ENSACAG00000004612	SMARCAL1	69	64.349	Anolis_carolinensis
ENSSPAG00000003742	smarcal1	99	77.844	ENSACLG00000015990	SMARCAL1	93	88.714	Astatotilapia_calliptera
ENSSPAG00000003742	smarcal1	99	67.966	ENSAMXG00000003350	smarcal1	93	67.558	Astyanax_mexicanus
ENSSPAG00000003742	smarcal1	84	67.176	ENSCPBG00000013599	SMARCAL1	66	67.176	Chrysemys_picta_bellii
ENSSPAG00000003742	smarcal1	81	48.125	ENSCING00000009308	-	100	47.812	Ciona_intestinalis
ENSSPAG00000003742	smarcal1	96	81.418	ENSCSEG00000010785	SMARCAL1	95	73.008	Cynoglossus_semilaevis
ENSSPAG00000003742	smarcal1	99	75.754	ENSCVAG00000018780	SMARCAL1	93	74.818	Cyprinodon_variegatus
ENSSPAG00000003742	smarcal1	82	46.379	ENSEBUG00000011906	SMARCAL1	72	56.023	Eptatretus_burgeri
ENSSPAG00000003742	smarcal1	87	75.543	ENSELUG00000010440	-	66	75.832	Esox_lucius
ENSSPAG00000003742	smarcal1	84	65.906	ENSFALG00000003981	SMARCAL1	68	65.906	Ficedula_albicollis
ENSSPAG00000003742	smarcal1	99	75.995	ENSFHEG00000008380	SMARCAL1	93	75.699	Fundulus_heteroclitus
ENSSPAG00000003742	smarcal1	78	74.941	ENSGMOG00000010034	smarcal1	100	74.941	Gadus_morhua
ENSSPAG00000003742	smarcal1	83	64.869	ENSGALG00000011475	RPL37A	67	64.869	Gallus_gallus
ENSSPAG00000003742	smarcal1	93	85.421	ENSGACG00000006073	SMARCAL1	100	87.337	Gasterosteus_aculeatus
ENSSPAG00000003742	smarcal1	84	67.325	ENSGAGG00000015660	SMARCAL1	71	67.325	Gopherus_agassizii
ENSSPAG00000003742	smarcal1	99	88.429	ENSHBUG00000002973	smarcal1	84	88.429	Haplochromis_burtoni
ENSSPAG00000003742	smarcal1	99	73.742	ENSHCOG00000017921	smarcal1	95	74.097	Hippocampus_comes
ENSSPAG00000003742	smarcal1	99	76.867	ENSKMAG00000012023	SMARCAL1	96	76.867	Kryptolebias_marmoratus
ENSSPAG00000003742	smarcal1	99	81.386	ENSLBEG00000022915	smarcal1	99	81.386	Labrus_bergylta
ENSSPAG00000003742	smarcal1	96	81.757	ENSLBEG00000003493	smarcal1	86	87.611	Labrus_bergylta
ENSSPAG00000003742	smarcal1	89	59.770	ENSLACG00000010974	SMARCAL1	69	61.712	Latimeria_chalumnae
ENSSPAG00000003742	smarcal1	99	63.971	ENSLOCG00000009637	smarcal1	78	75.457	Lepisosteus_oculatus
ENSSPAG00000003742	smarcal1	99	79.928	ENSMAMG00000000828	SMARCAL1	95	78.846	Mastacembelus_armatus
ENSSPAG00000003742	smarcal1	99	77.725	ENSMZEG00005007660	SMARCAL1	93	88.571	Maylandia_zebra
ENSSPAG00000003742	smarcal1	89	62.181	ENSMGAG00000011658	SMARCAL1	69	65.344	Meleagris_gallopavo
ENSSPAG00000003742	smarcal1	99	78.378	ENSMMOG00000003842	smarcal1	95	78.378	Mola_mola
ENSSPAG00000003742	smarcal1	82	63.256	ENSMODG00000015544	SMARCAL1	67	63.142	Monodelphis_domestica
ENSSPAG00000003742	smarcal1	100	84.930	ENSNBRG00000016273	smarcal1	98	84.419	Neolamprologus_brichardi
ENSSPAG00000003742	smarcal1	80	63.708	ENSMEUG00000004395	SMARCAL1	73	62.928	Notamacropus_eugenii
ENSSPAG00000003742	smarcal1	99	78.225	ENSONIG00000009036	smarcal1	95	89.077	Oreochromis_niloticus
ENSSPAG00000003742	smarcal1	99	75.995	ENSORLG00000016455	SMARCAL1	92	75.394	Oryzias_latipes
ENSSPAG00000003742	smarcal1	99	76.236	ENSORLG00020001610	SMARCAL1	83	84.480	Oryzias_latipes_hni
ENSSPAG00000003742	smarcal1	99	76.357	ENSORLG00015001865	SMARCAL1	92	75.515	Oryzias_latipes_hsok
ENSSPAG00000003742	smarcal1	99	79.602	ENSOMEG00000001845	smarcal1	93	79.602	Oryzias_melastigma
ENSSPAG00000003742	smarcal1	99	73.939	ENSPMGG00000019092	SMARCAL1	92	73.939	Periophthalmus_magnuspinnatus
ENSSPAG00000003742	smarcal1	84	61.527	ENSPCIG00000022514	SMARCAL1	71	62.696	Phascolarctos_cinereus
ENSSPAG00000003742	smarcal1	99	75.149	ENSPFOG00000000560	SMARCAL1	76	84.559	Poecilia_formosa
ENSSPAG00000003742	smarcal1	99	75.149	ENSPMEG00000018146	SMARCAL1	76	84.559	Poecilia_mexicana
ENSSPAG00000003742	smarcal1	63	86.207	ENSPREG00000009591	SMARCAL1	88	86.207	Poecilia_reticulata
ENSSPAG00000003742	smarcal1	99	67.722	ENSPNAG00000014900	smarcal1	74	75.656	Pygocentrus_nattereri
ENSSPAG00000003742	smarcal1	98	51.306	ENSSHAG00000013538	SMARCAL1	70	59.568	Sarcophilus_harrisii
ENSSPAG00000003742	smarcal1	99	86.771	ENSSMAG00000010427	SMARCAL1	93	86.771	Scophthalmus_maximus
ENSSPAG00000003742	smarcal1	99	79.343	ENSSDUG00000017470	SMARCAL1	81	89.301	Seriola_dumerili
ENSSPAG00000003742	smarcal1	97	89.301	ENSSLDG00000007224	SMARCAL1	83	89.301	Seriola_lalandi_dorsalis
ENSSPAG00000003742	smarcal1	83	68.397	ENSSPUG00000015369	SMARCAL1	65	68.397	Sphenodon_punctatus
ENSSPAG00000003742	smarcal1	83	59.014	ENSSSCG00000035501	SMARCAL1	72	59.168	Sus_scrofa
ENSSPAG00000003742	smarcal1	83	64.154	ENSTGUG00000005079	SMARCAL1	95	64.154	Taeniopygia_guttata
ENSSPAG00000003742	smarcal1	98	67.244	ENSTRUG00000010701	SMARCAL1	92	66.791	Takifugu_rubripes
ENSSPAG00000003742	smarcal1	99	52.576	ENSTTRG00000009001	SMARCAL1	69	52.424	Tursiops_truncatus
ENSSPAG00000003742	smarcal1	99	65.906	ENSXETG00000000465	smarcal1	93	69.149	Xenopus_tropicalis