EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSPAG00000004345 (Gene tree)
Gene ID: 103362159
Gene Symbol: smn1
Alias: fa12d01|smn|wu:fa12d01
Full Name: survival motor neuron protein 1-like
Gene Type: protein_coding
Species: Stegastes_partitus
Status: putative
Strand: Plus strand
Length: 4044 bases
Position: chrKK580084.1:310042-314085
Accession: 103362159
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPAP00000005616	SMN	PF06003.12	1.6e-110	1	1
ENSSPAP00000005641	SMN	PF06003.12	7.2e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPAT00000005730	-	1090	XM_008288448	ENSSPAP00000005616	283 (aa)	XP_008286670	UPI00049717DC
ENSSPAT00000005755	-	795	-	ENSSPAP00000005641	264 (aa)	-	-

Gene Model

Click here to download ENSSPAG00000004345's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPAG00000004345's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPAG00000004345	smn1	94	53.360	ENSG00000172062	SMN1	92	52.030	Homo_sapiens
ENSSPAG00000004345	smn1	94	53.360	ENSG00000205571	SMN2	80	67.568	Homo_sapiens
ENSSPAG00000004345	smn1	100	89.753	ENSAPOG00000011324	smn1	100	89.753	Acanthochromis_polyacanthus
ENSSPAG00000004345	smn1	94	52.899	ENSAMEG00000003316	-	89	50.903	Ailuropoda_melanoleuca
ENSSPAG00000004345	smn1	93	78.707	ENSACIG00000019772	-	99	78.707	Amphilophus_citrinellus
ENSSPAG00000004345	smn1	64	78.824	ENSACIG00000007598	smn1	95	79.191	Amphilophus_citrinellus
ENSSPAG00000004345	smn1	100	90.459	ENSAOCG00000024444	smn1	100	90.459	Amphiprion_ocellaris
ENSSPAG00000004345	smn1	100	90.813	ENSAPEG00000016504	smn1	100	90.813	Amphiprion_percula
ENSSPAG00000004345	smn1	95	87.407	ENSATEG00000002182	smn1	82	87.037	Anabas_testudineus
ENSSPAG00000004345	smn1	69	48.756	ENSAPLG00000010912	-	96	46.392	Anas_platyrhynchos
ENSSPAG00000004345	smn1	98	50.175	ENSACAG00000010017	-	96	51.103	Anolis_carolinensis
ENSSPAG00000004345	smn1	94	51.071	ENSANAG00000032133	-	92	52.941	Aotus_nancymaae
ENSSPAG00000004345	smn1	99	80.645	ENSACLG00000007308	smn1	94	81.004	Astatotilapia_calliptera
ENSSPAG00000004345	smn1	100	64.211	ENSAMXG00000013884	smn1	100	65.263	Astyanax_mexicanus
ENSSPAG00000004345	smn1	94	52.899	ENSBTAG00000005743	SMN2	93	52.536	Bos_taurus
ENSSPAG00000004345	smn1	94	54.150	ENSCJAG00000016290	-	90	52.713	Callithrix_jacchus
ENSSPAG00000004345	smn1	94	50.355	ENSCAFG00000007812	SMN	93	51.812	Canis_familiaris
ENSSPAG00000004345	smn1	94	50.355	ENSCAFG00020019229	-	86	51.812	Canis_lupus_dingo
ENSSPAG00000004345	smn1	94	52.158	ENSCHIG00000015559	-	91	52.518	Capra_hircus
ENSSPAG00000004345	smn1	94	53.360	ENSTSYG00000012058	-	93	52.899	Carlito_syrichta
ENSSPAG00000004345	smn1	75	46.544	ENSCAPG00000011021	-	86	46.766	Cavia_aperea
ENSSPAG00000004345	smn1	94	51.071	ENSCPOG00000036973	-	92	53.237	Cavia_porcellus
ENSSPAG00000004345	smn1	94	50.355	ENSCPOG00000012328	-	93	51.408	Cavia_porcellus
ENSSPAG00000004345	smn1	94	52.569	ENSCCAG00000018127	-	90	52.326	Cebus_capucinus
ENSSPAG00000004345	smn1	94	52.569	ENSCATG00000037002	-	92	52.416	Cercocebus_atys
ENSSPAG00000004345	smn1	94	53.282	ENSCLAG00000000284	-	92	52.857	Chinchilla_lanigera
ENSSPAG00000004345	smn1	94	53.237	ENSCSAG00000015688	-	91	52.518	Chlorocebus_sabaeus
ENSSPAG00000004345	smn1	65	76.667	ENSCHOG00000007346	-	67	82.609	Choloepus_hoffmanni
ENSSPAG00000004345	smn1	96	49.110	ENSCPBG00000010968	-	97	52.569	Chrysemys_picta_bellii
ENSSPAG00000004345	smn1	97	50.000	ENSCANG00000033324	-	94	48.958	Colobus_angolensis_palliatus
ENSSPAG00000004345	smn1	94	53.623	ENSCANG00000038242	-	93	53.488	Colobus_angolensis_palliatus
ENSSPAG00000004345	smn1	94	40.590	ENSCGRG00001016998	-	91	39.130	Cricetulus_griseus_chok1gshd
ENSSPAG00000004345	smn1	94	52.364	ENSCGRG00001017959	-	93	51.636	Cricetulus_griseus_chok1gshd
ENSSPAG00000004345	smn1	94	52.364	ENSCGRG00000007698	Smn1	93	51.636	Cricetulus_griseus_crigri
ENSSPAG00000004345	smn1	98	68.531	ENSCSEG00000015227	smn1	100	68.881	Cynoglossus_semilaevis
ENSSPAG00000004345	smn1	100	80.634	ENSCVAG00000007498	smn1	100	80.634	Cyprinodon_variegatus
ENSSPAG00000004345	smn1	100	63.763	ENSDARG00000018494	smn1	100	65.157	Danio_rerio
ENSSPAG00000004345	smn1	82	46.694	ENSDNOG00000007283	-	97	46.352	Dasypus_novemcinctus
ENSSPAG00000004345	smn1	82	42.424	ENSDNOG00000045949	-	69	52.500	Dasypus_novemcinctus
ENSSPAG00000004345	smn1	94	42.125	ENSDORG00000007082	Smn1	90	43.130	Dipodomys_ordii
ENSSPAG00000004345	smn1	69	43.011	ENSETEG00000001406	-	91	45.833	Echinops_telfairi
ENSSPAG00000004345	smn1	96	41.135	ENSEBUG00000011902	smn1	96	40.636	Eptatretus_burgeri
ENSSPAG00000004345	smn1	89	47.893	ENSEASG00005018000	-	89	48.669	Equus_asinus_asinus
ENSSPAG00000004345	smn1	94	52.536	ENSECAG00000015215	-	93	53.047	Equus_caballus
ENSSPAG00000004345	smn1	88	51.538	ENSEEUG00000015777	-	100	49.219	Erinaceus_europaeus
ENSSPAG00000004345	smn1	100	67.254	ENSELUG00000018067	smn1	100	67.254	Esox_lucius
ENSSPAG00000004345	smn1	94	53.360	ENSFCAG00000028292	SMN	92	53.333	Felis_catus
ENSSPAG00000004345	smn1	95	52.364	ENSFALG00000012320	-	95	50.193	Ficedula_albicollis
ENSSPAG00000004345	smn1	94	48.014	ENSFDAG00000017683	-	92	50.178	Fukomys_damarensis
ENSSPAG00000004345	smn1	97	80.797	ENSFHEG00000018508	smn1	100	80.797	Fundulus_heteroclitus
ENSSPAG00000004345	smn1	100	67.138	ENSGMOG00000017279	smn1	98	66.078	Gadus_morhua
ENSSPAG00000004345	smn1	94	51.136	ENSGALG00000002430	SMN	97	51.029	Gallus_gallus
ENSSPAG00000004345	smn1	100	82.686	ENSGAFG00000009501	smn1	100	82.686	Gambusia_affinis
ENSSPAG00000004345	smn1	100	82.332	ENSGACG00000010584	smn1	97	82.332	Gasterosteus_aculeatus
ENSSPAG00000004345	smn1	98	36.567	ENSGAGG00000013639	-	91	39.362	Gopherus_agassizii
ENSSPAG00000004345	smn1	96	50.360	ENSGAGG00000011374	-	95	53.030	Gopherus_agassizii
ENSSPAG00000004345	smn1	58	62.025	ENSGGOG00000026704	-	85	56.906	Gorilla_gorilla
ENSSPAG00000004345	smn1	91	53.689	ENSGGOG00000003872	-	93	53.012	Gorilla_gorilla
ENSSPAG00000004345	smn1	100	83.392	ENSHBUG00000013987	smn1	100	83.746	Haplochromis_burtoni
ENSSPAG00000004345	smn1	94	50.542	ENSHGLG00000001018	-	92	51.971	Heterocephalus_glaber_female
ENSSPAG00000004345	smn1	94	48.175	ENSHGLG00000001905	-	94	45.486	Heterocephalus_glaber_female
ENSSPAG00000004345	smn1	94	50.542	ENSHGLG00100011252	-	92	51.971	Heterocephalus_glaber_male
ENSSPAG00000004345	smn1	92	48.134	ENSHGLG00100018676	-	96	45.390	Heterocephalus_glaber_male
ENSSPAG00000004345	smn1	94	78.491	ENSHCOG00000017136	smn1	89	79.245	Hippocampus_comes
ENSSPAG00000004345	smn1	100	64.111	ENSIPUG00000012580	smn1	89	64.111	Ictalurus_punctatus
ENSSPAG00000004345	smn1	91	52.075	ENSSTOG00000012288	-	93	50.943	Ictidomys_tridecemlineatus
ENSSPAG00000004345	smn1	53	50.350	ENSJJAG00000014853	-	96	46.995	Jaculus_jaculus
ENSSPAG00000004345	smn1	100	81.818	ENSKMAG00000007239	smn1	100	81.818	Kryptolebias_marmoratus
ENSSPAG00000004345	smn1	100	85.211	ENSLBEG00000022550	smn1	100	84.859	Labrus_bergylta
ENSSPAG00000004345	smn1	99	34.000	ENSLACG00000009808	-	95	34.483	Latimeria_chalumnae
ENSSPAG00000004345	smn1	100	56.207	ENSLOCG00000011339	smn1	100	58.303	Lepisosteus_oculatus
ENSSPAG00000004345	smn1	94	51.786	ENSLAFG00000003425	-	89	51.786	Loxodonta_africana
ENSSPAG00000004345	smn1	94	49.640	ENSMFAG00000008812	-	91	50.181	Macaca_fascicularis
ENSSPAG00000004345	smn1	94	54.545	ENSMFAG00000031523	SMN1	95	51.292	Macaca_fascicularis
ENSSPAG00000004345	smn1	94	48.921	ENSMMUG00000030594	-	91	49.458	Macaca_mulatta
ENSSPAG00000004345	smn1	94	54.545	ENSMMUG00000020214	SMN1	92	53.160	Macaca_mulatta
ENSSPAG00000004345	smn1	94	54.545	ENSMNEG00000035094	-	92	53.160	Macaca_nemestrina
ENSSPAG00000004345	smn1	76	40.351	ENSMNEG00000036423	-	70	45.109	Macaca_nemestrina
ENSSPAG00000004345	smn1	94	54.545	ENSMLEG00000041902	-	93	53.160	Mandrillus_leucophaeus
ENSSPAG00000004345	smn1	100	84.507	ENSMAMG00000011034	smn1	100	83.099	Mastacembelus_armatus
ENSSPAG00000004345	smn1	100	83.746	ENSMZEG00005013634	smn1	100	84.099	Maylandia_zebra
ENSSPAG00000004345	smn1	69	49.746	ENSMGAG00000008889	-	95	46.995	Meleagris_gallopavo
ENSSPAG00000004345	smn1	94	52.174	ENSMAUG00000010262	Smn1	93	50.909	Mesocricetus_auratus
ENSSPAG00000004345	smn1	82	48.729	ENSMICG00000034708	-	84	53.403	Microcebus_murinus
ENSSPAG00000004345	smn1	94	52.536	ENSMOCG00000017833	Smn1	93	53.704	Microtus_ochrogaster
ENSSPAG00000004345	smn1	96	72.624	ENSMMOG00000005504	smn1	97	72.519	Mola_mola
ENSSPAG00000004345	smn1	94	54.212	ENSMODG00000001436	-	92	51.698	Monodelphis_domestica
ENSSPAG00000004345	smn1	100	85.563	ENSMALG00000008025	smn1	100	85.211	Monopterus_albus
ENSSPAG00000004345	smn1	94	52.788	MGP_CAROLIEiJ_G0018836	Smn1	93	52.963	Mus_caroli
ENSSPAG00000004345	smn1	94	52.416	ENSMUSG00000021645	Smn1	93	52.593	Mus_musculus
ENSSPAG00000004345	smn1	94	52.399	MGP_PahariEiJ_G0015911	Smn1	93	53.676	Mus_pahari
ENSSPAG00000004345	smn1	94	52.174	MGP_SPRETEiJ_G0019718	Smn1	93	52.222	Mus_spretus
ENSSPAG00000004345	smn1	92	52.399	ENSMPUG00000014470	-	93	50.554	Mustela_putorius_furo
ENSSPAG00000004345	smn1	94	49.296	ENSMLUG00000010603	-	89	50.173	Myotis_lucifugus
ENSSPAG00000004345	smn1	94	50.538	ENSNGAG00000019833	Smn1	93	49.254	Nannospalax_galili
ENSSPAG00000004345	smn1	100	84.806	ENSNBRG00000023000	smn1	100	84.806	Neolamprologus_brichardi
ENSSPAG00000004345	smn1	94	53.755	ENSNLEG00000004454	-	92	52.399	Nomascus_leucogenys
ENSSPAG00000004345	smn1	66	51.295	ENSMEUG00000011393	-	100	43.439	Notamacropus_eugenii
ENSSPAG00000004345	smn1	88	47.909	ENSOPRG00000002015	-	100	48.327	Ochotona_princeps
ENSSPAG00000004345	smn1	91	53.532	ENSODEG00000015976	-	91	54.275	Octodon_degus
ENSSPAG00000004345	smn1	100	84.099	ENSONIG00000011799	smn1	100	84.099	Oreochromis_niloticus
ENSSPAG00000004345	smn1	95	46.454	ENSOANG00000001626	-	95	49.813	Ornithorhynchus_anatinus
ENSSPAG00000004345	smn1	94	52.899	ENSOCUG00000026649	-	92	52.030	Oryctolagus_cuniculus
ENSSPAG00000004345	smn1	94	41.844	ENSOCUG00000025183	-	92	43.617	Oryctolagus_cuniculus
ENSSPAG00000004345	smn1	94	53.137	ENSOCUG00000017097	-	92	53.030	Oryctolagus_cuniculus
ENSSPAG00000004345	smn1	100	79.152	ENSORLG00000010552	smn1	100	79.152	Oryzias_latipes
ENSSPAG00000004345	smn1	100	78.491	ENSORLG00020007936	smn1	100	78.491	Oryzias_latipes_hni
ENSSPAG00000004345	smn1	100	79.152	ENSORLG00015022425	smn1	100	79.152	Oryzias_latipes_hsok
ENSSPAG00000004345	smn1	100	80.565	ENSOMEG00000007824	smn1	100	80.565	Oryzias_melastigma
ENSSPAG00000004345	smn1	91	47.037	ENSOGAG00000031414	-	92	47.636	Otolemur_garnettii
ENSSPAG00000004345	smn1	94	51.087	ENSOARG00000005425	-	98	51.449	Ovis_aries
ENSSPAG00000004345	smn1	94	53.360	ENSPPAG00000036640	-	92	52.030	Pan_paniscus
ENSSPAG00000004345	smn1	94	53.360	ENSPPRG00000005575	-	92	53.333	Panthera_pardus
ENSSPAG00000004345	smn1	94	53.360	ENSPTIG00000007745	-	92	53.333	Panthera_tigris_altaica
ENSSPAG00000004345	smn1	94	53.360	ENSPTRG00000016955	-	92	52.015	Pan_troglodytes
ENSSPAG00000004345	smn1	94	51.383	ENSPANG00000000253	-	91	52.569	Papio_anubis
ENSSPAG00000004345	smn1	94	54.545	ENSPANG00000013601	-	91	52.878	Papio_anubis
ENSSPAG00000004345	smn1	100	59.774	ENSPKIG00000011096	smn1	100	59.398	Paramormyrops_kingsleyae
ENSSPAG00000004345	smn1	92	49.091	ENSPSIG00000014787	-	83	52.778	Pelodiscus_sinensis
ENSSPAG00000004345	smn1	100	72.727	ENSPMGG00000012285	smn1	100	70.463	Periophthalmus_magnuspinnatus
ENSSPAG00000004345	smn1	92	40.892	ENSPMAG00000005004	smn1	91	40.672	Petromyzon_marinus
ENSSPAG00000004345	smn1	94	56.204	ENSPCIG00000025764	-	93	50.558	Phascolarctos_cinereus
ENSSPAG00000004345	smn1	100	81.625	ENSPFOG00000007786	smn1	100	81.625	Poecilia_formosa
ENSSPAG00000004345	smn1	100	81.979	ENSPLAG00000012071	smn1	100	81.979	Poecilia_latipinna
ENSSPAG00000004345	smn1	100	81.625	ENSPMEG00000017085	smn1	100	81.625	Poecilia_mexicana
ENSSPAG00000004345	smn1	100	81.979	ENSPREG00000005824	smn1	100	81.979	Poecilia_reticulata
ENSSPAG00000004345	smn1	87	40.343	ENSPPYG00000019189	-	99	41.202	Pongo_abelii
ENSSPAG00000004345	smn1	92	50.923	ENSPPYG00000015533	-	95	50.545	Pongo_abelii
ENSSPAG00000004345	smn1	91	51.136	ENSPCAG00000004187	-	98	48.175	Procavia_capensis
ENSSPAG00000004345	smn1	67	49.451	ENSPCOG00000022307	-	65	56.250	Propithecus_coquereli
ENSSPAG00000004345	smn1	94	53.623	ENSPVAG00000005977	-	92	51.986	Pteropus_vampyrus
ENSSPAG00000004345	smn1	100	84.806	ENSPNYG00000014148	smn1	100	84.806	Pundamilia_nyererei
ENSSPAG00000004345	smn1	100	66.084	ENSPNAG00000014007	smn1	87	66.084	Pygocentrus_nattereri
ENSSPAG00000004345	smn1	94	52.000	ENSRNOG00000018067	Smn1	92	52.222	Rattus_norvegicus
ENSSPAG00000004345	smn1	97	50.000	ENSRBIG00000036775	-	93	47.670	Rhinopithecus_bieti
ENSSPAG00000004345	smn1	94	53.571	ENSRBIG00000037052	-	91	52.518	Rhinopithecus_bieti
ENSSPAG00000004345	smn1	94	50.800	ENSRROG00000031088	-	91	46.886	Rhinopithecus_roxellana
ENSSPAG00000004345	smn1	94	53.571	ENSRROG00000039399	-	94	50.877	Rhinopithecus_roxellana
ENSSPAG00000004345	smn1	55	57.333	ENSSBOG00000020112	-	87	44.882	Saimiri_boliviensis_boliviensis
ENSSPAG00000004345	smn1	94	54.150	ENSSBOG00000011665	-	91	53.759	Saimiri_boliviensis_boliviensis
ENSSPAG00000004345	smn1	94	56.410	ENSSHAG00000001499	-	98	48.327	Sarcophilus_harrisii
ENSSPAG00000004345	smn1	100	60.345	ENSSFOG00015015507	smn1	100	60.223	Scleropages_formosus
ENSSPAG00000004345	smn1	100	78.799	ENSSMAG00000007922	smn1	100	81.272	Scophthalmus_maximus
ENSSPAG00000004345	smn1	100	89.085	ENSSDUG00000018533	smn1	100	88.732	Seriola_dumerili
ENSSPAG00000004345	smn1	100	89.437	ENSSLDG00000021135	smn1	100	89.085	Seriola_lalandi_dorsalis
ENSSPAG00000004345	smn1	96	55.556	ENSSPUG00000000373	-	98	54.244	Sphenodon_punctatus
ENSSPAG00000004345	smn1	94	43.145	ENSSSCG00000029127	-	74	65.625	Sus_scrofa
ENSSPAG00000004345	smn1	94	52.708	ENSSSCG00000016970	-	92	54.317	Sus_scrofa
ENSSPAG00000004345	smn1	93	50.538	ENSTGUG00000001548	-	97	46.886	Taeniopygia_guttata
ENSSPAG00000004345	smn1	100	69.611	ENSTRUG00000000736	smn	100	71.378	Takifugu_rubripes
ENSSPAG00000004345	smn1	100	68.966	ENSTNIG00000009892	smn1	100	70.000	Tetraodon_nigroviridis
ENSSPAG00000004345	smn1	58	60.510	ENSTBEG00000002399	-	91	54.167	Tupaia_belangeri
ENSSPAG00000004345	smn1	58	60.256	ENSTTRG00000005080	-	91	53.137	Tursiops_truncatus
ENSSPAG00000004345	smn1	58	62.179	ENSUAMG00000024947	-	57	62.179	Ursus_americanus
ENSSPAG00000004345	smn1	94	53.623	ENSUMAG00000007842	-	69	51.625	Ursus_maritimus
ENSSPAG00000004345	smn1	91	49.042	ENSVPAG00000009887	-	93	47.810	Vicugna_pacos
ENSSPAG00000004345	smn1	94	50.355	ENSVVUG00000006934	-	93	51.812	Vulpes_vulpes
ENSSPAG00000004345	smn1	87	33.588	ENSXETG00000004912	-	82	56.897	Xenopus_tropicalis
ENSSPAG00000004345	smn1	98	55.088	ENSXETG00000018189	smn2	95	54.348	Xenopus_tropicalis
ENSSPAG00000004345	smn1	100	80.919	ENSXMAG00000001521	smn1	100	80.919	Xiphophorus_maculatus