EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSPAG00000004648 (Gene tree)
Gene ID: 103367748
Gene Symbol: r3hdm1
Alias: WITHDRAWN: wu:fj35h04|fj35h04|fk85b04|id:ibd5043|sb:eu460|si:ch73-60i13.2|wu:fj35h04|wu:fk85b04
Full Name: R3H domain-containing protein 1-like
Gene Type: protein_coding
Species: Stegastes_partitus
Status: putative
Strand: Minus strand
Length: 50277 bases
Position: chrKK581152.1:17018-67294
Accession: 103367748
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPAP00000006149	R3H	PF01424.22	2.4e-12	1	1
ENSSPAP00000006097	R3H	PF01424.22	2.6e-12	1	1
ENSSPAP00000006039	R3H	PF01424.22	2.6e-12	1	1
ENSSPAP00000006009	R3H	PF01424.22	2.7e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPAT00000006161	-	5087	XM_008295868	ENSSPAP00000006039	1004 (aa)	XP_008294090	-
ENSSPAT00000006219	-	5033	XM_008295872	ENSSPAP00000006097	986 (aa)	XP_008294094	-
ENSSPAT00000006272	-	4997	XM_008295869	ENSSPAP00000006149	974 (aa)	XP_008294091	-
ENSSPAT00000006131	-	5105	XM_008295865	ENSSPAP00000006009	1010 (aa)	XP_008294087	-

Gene Model

Click here to download ENSSPAG00000004648's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPAG00000004648's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSPAG00000004648	r3hdm1	88	50.611	ENSSPAG00000022594	r3hdm2	86	50.440

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPAG00000004648	r3hdm1	91	63.467	ENSG00000048991	R3HDM1	97	66.312	Homo_sapiens
ENSSPAG00000004648	r3hdm1	100	91.635	ENSAPOG00000020850	r3hdm1	96	91.635	Acanthochromis_polyacanthus
ENSSPAG00000004648	r3hdm1	99	49.704	ENSAMEG00000014886	R3HDM1	89	49.714	Ailuropoda_melanoleuca
ENSSPAG00000004648	r3hdm1	100	91.255	ENSAOCG00000005192	r3hdm1	100	91.255	Amphiprion_ocellaris
ENSSPAG00000004648	r3hdm1	100	94.969	ENSAPEG00000016108	r3hdm1	100	94.969	Amphiprion_percula
ENSSPAG00000004648	r3hdm1	100	88.217	ENSATEG00000000232	r3hdm1	100	88.832	Anabas_testudineus
ENSSPAG00000004648	r3hdm1	99	48.162	ENSAPLG00000015231	R3HDM1	89	48.904	Anas_platyrhynchos
ENSSPAG00000004648	r3hdm1	99	48.106	ENSACAG00000001676	R3HDM1	89	47.738	Anolis_carolinensis
ENSSPAG00000004648	r3hdm1	91	63.733	ENSANAG00000035334	R3HDM1	87	63.733	Aotus_nancymaae
ENSSPAG00000004648	r3hdm1	100	89.139	ENSACLG00000027282	r3hdm1	100	89.139	Astatotilapia_calliptera
ENSSPAG00000004648	r3hdm1	91	65.375	ENSAMXG00000012861	R3HDM1	89	64.649	Astyanax_mexicanus
ENSSPAG00000004648	r3hdm1	98	51.553	ENSAMXG00000003536	r3hdm1	90	49.679	Astyanax_mexicanus
ENSSPAG00000004648	r3hdm1	99	48.448	ENSBTAG00000013302	R3HDM1	89	48.611	Bos_taurus
ENSSPAG00000004648	r3hdm1	91	63.467	ENSCJAG00000011718	R3HDM1	87	63.467	Callithrix_jacchus
ENSSPAG00000004648	r3hdm1	99	49.803	ENSCAFG00000005075	R3HDM1	89	49.619	Canis_familiaris
ENSSPAG00000004648	r3hdm1	99	49.803	ENSCAFG00020016119	R3HDM1	99	57.857	Canis_lupus_dingo
ENSSPAG00000004648	r3hdm1	99	49.605	ENSCHIG00000020851	R3HDM1	89	50.000	Capra_hircus
ENSSPAG00000004648	r3hdm1	99	47.801	ENSCPOG00000012784	R3HDM1	100	62.457	Cavia_porcellus
ENSSPAG00000004648	r3hdm1	91	62.933	ENSCCAG00000027199	R3HDM1	87	62.933	Cebus_capucinus
ENSSPAG00000004648	r3hdm1	97	59.962	ENSCATG00000023642	R3HDM1	87	63.200	Cercocebus_atys
ENSSPAG00000004648	r3hdm1	99	46.991	ENSCLAG00000007962	R3HDM1	100	64.846	Chinchilla_lanigera
ENSSPAG00000004648	r3hdm1	99	47.642	ENSCSAG00000016356	R3HDM1	89	48.011	Chlorocebus_sabaeus
ENSSPAG00000004648	r3hdm1	80	65.649	ENSCHOG00000013638	R3HDM1	69	65.649	Choloepus_hoffmanni
ENSSPAG00000004648	r3hdm1	82	70.144	ENSCPBG00000009645	R3HDM1	86	70.144	Chrysemys_picta_bellii
ENSSPAG00000004648	r3hdm1	91	63.200	ENSCANG00000034748	R3HDM1	87	63.200	Colobus_angolensis_palliatus
ENSSPAG00000004648	r3hdm1	99	47.605	ENSCGRG00001012357	R3hdm1	86	47.359	Cricetulus_griseus_chok1gshd
ENSSPAG00000004648	r3hdm1	99	48.814	ENSCGRG00000012080	R3hdm1	100	65.870	Cricetulus_griseus_crigri
ENSSPAG00000004648	r3hdm1	100	72.553	ENSCSEG00000008944	r3hdm1	100	73.730	Cynoglossus_semilaevis
ENSSPAG00000004648	r3hdm1	100	81.836	ENSCVAG00000007582	r3hdm1	100	81.737	Cyprinodon_variegatus
ENSSPAG00000004648	r3hdm1	99	47.338	ENSDNOG00000000771	R3HDM1	89	47.818	Dasypus_novemcinctus
ENSSPAG00000004648	r3hdm1	99	44.667	ENSETEG00000013606	R3HDM1	89	45.472	Echinops_telfairi
ENSSPAG00000004648	r3hdm1	51	45.047	ENSEBUG00000014746	arpp21	97	40.501	Eptatretus_burgeri
ENSSPAG00000004648	r3hdm1	91	61.814	ENSEASG00005007392	R3HDM1	89	49.429	Equus_asinus_asinus
ENSSPAG00000004648	r3hdm1	91	61.814	ENSECAG00000019114	R3HDM1	89	49.429	Equus_caballus
ENSSPAG00000004648	r3hdm1	58	54.789	ENSEEUG00000012589	R3HDM1	56	52.594	Erinaceus_europaeus
ENSSPAG00000004648	r3hdm1	97	49.810	ENSELUG00000004909	R3HDM1	86	51.863	Esox_lucius
ENSSPAG00000004648	r3hdm1	90	53.603	ENSELUG00000014413	r3hdm1	83	54.208	Esox_lucius
ENSSPAG00000004648	r3hdm1	91	61.337	ENSFCAG00000027113	R3HDM1	88	62.053	Felis_catus
ENSSPAG00000004648	r3hdm1	85	48.953	ENSFALG00000013731	R3HDM1	90	44.259	Ficedula_albicollis
ENSSPAG00000004648	r3hdm1	99	47.564	ENSFDAG00000016478	R3HDM1	100	65.870	Fukomys_damarensis
ENSSPAG00000004648	r3hdm1	100	79.412	ENSFHEG00000018713	r3hdm1	100	79.317	Fundulus_heteroclitus
ENSSPAG00000004648	r3hdm1	65	62.017	ENSGMOG00000006042	-	79	54.799	Gadus_morhua
ENSSPAG00000004648	r3hdm1	91	61.333	ENSGALG00000012246	R3HDM1	85	65.049	Gallus_gallus
ENSSPAG00000004648	r3hdm1	100	80.082	ENSGAFG00000006203	r3hdm1	100	80.286	Gambusia_affinis
ENSSPAG00000004648	r3hdm1	95	79.820	ENSGACG00000014925	r3hdm1	95	79.620	Gasterosteus_aculeatus
ENSSPAG00000004648	r3hdm1	91	61.029	ENSGAGG00000007840	R3HDM1	84	61.029	Gopherus_agassizii
ENSSPAG00000004648	r3hdm1	91	63.467	ENSGGOG00000008156	R3HDM1	87	63.467	Gorilla_gorilla
ENSSPAG00000004648	r3hdm1	56	89.531	ENSHBUG00000015737	R3HDM1	99	89.531	Haplochromis_burtoni
ENSSPAG00000004648	r3hdm1	99	47.863	ENSHGLG00000015718	R3HDM1	100	65.529	Heterocephalus_glaber_female
ENSSPAG00000004648	r3hdm1	99	47.768	ENSHGLG00100003184	-	100	65.870	Heterocephalus_glaber_male
ENSSPAG00000004648	r3hdm1	99	40.383	ENSHGLG00100015374	-	91	40.644	Heterocephalus_glaber_male
ENSSPAG00000004648	r3hdm1	100	70.245	ENSHCOG00000013366	r3hdm1	100	70.143	Hippocampus_comes
ENSSPAG00000004648	r3hdm1	100	46.819	ENSIPUG00000013629	r3hdm1	82	69.935	Ictalurus_punctatus
ENSSPAG00000004648	r3hdm1	100	52.700	ENSIPUG00000001676	R3HDM1	100	52.161	Ictalurus_punctatus
ENSSPAG00000004648	r3hdm1	99	50.000	ENSSTOG00000007572	R3HDM1	100	66.212	Ictidomys_tridecemlineatus
ENSSPAG00000004648	r3hdm1	91	63.357	ENSLACG00000005334	R3HDM1	89	62.648	Latimeria_chalumnae
ENSSPAG00000004648	r3hdm1	100	51.805	ENSLOCG00000001641	r3hdm1	89	52.381	Lepisosteus_oculatus
ENSSPAG00000004648	r3hdm1	99	47.801	ENSLAFG00000009065	R3HDM1	89	47.882	Loxodonta_africana
ENSSPAG00000004648	r3hdm1	91	63.467	ENSMFAG00000030331	R3HDM1	88	62.530	Macaca_fascicularis
ENSSPAG00000004648	r3hdm1	91	63.467	ENSMMUG00000009844	R3HDM1	87	63.467	Macaca_mulatta
ENSSPAG00000004648	r3hdm1	91	63.467	ENSMNEG00000027793	R3HDM1	88	62.530	Macaca_nemestrina
ENSSPAG00000004648	r3hdm1	91	63.467	ENSMLEG00000043189	R3HDM1	87	63.467	Mandrillus_leucophaeus
ENSSPAG00000004648	r3hdm1	100	88.142	ENSMAMG00000004532	r3hdm1	100	88.142	Mastacembelus_armatus
ENSSPAG00000004648	r3hdm1	100	89.879	ENSMZEG00005003157	r3hdm1	100	89.526	Maylandia_zebra
ENSSPAG00000004648	r3hdm1	98	49.018	ENSMGAG00000012461	R3HDM1	88	49.044	Meleagris_gallopavo
ENSSPAG00000004648	r3hdm1	99	48.187	ENSMAUG00000010315	R3hdm1	100	65.870	Mesocricetus_auratus
ENSSPAG00000004648	r3hdm1	91	63.200	ENSMICG00000005900	-	87	63.200	Microcebus_murinus
ENSSPAG00000004648	r3hdm1	91	62.933	ENSMICG00000042655	-	92	62.933	Microcebus_murinus
ENSSPAG00000004648	r3hdm1	51	59.195	ENSMOCG00000019833	-	100	65.529	Microtus_ochrogaster
ENSSPAG00000004648	r3hdm1	99	46.147	ENSMODG00000000923	R3HDM1	96	45.725	Monodelphis_domestica
ENSSPAG00000004648	r3hdm1	100	86.495	ENSMALG00000009000	r3hdm1	90	86.395	Monopterus_albus
ENSSPAG00000004648	r3hdm1	99	47.323	MGP_CAROLIEiJ_G0014543	R3hdm1	100	65.870	Mus_caroli
ENSSPAG00000004648	r3hdm1	99	47.228	ENSMUSG00000056211	R3hdm1	100	65.870	Mus_musculus
ENSSPAG00000004648	r3hdm1	99	46.845	MGP_PahariEiJ_G0027779	R3hdm1	100	65.870	Mus_pahari
ENSSPAG00000004648	r3hdm1	99	47.132	MGP_SPRETEiJ_G0015350	R3hdm1	100	65.870	Mus_spretus
ENSSPAG00000004648	r3hdm1	99	49.408	ENSMPUG00000002412	R3HDM1	89	49.714	Mustela_putorius_furo
ENSSPAG00000004648	r3hdm1	99	49.654	ENSMLUG00000013824	R3HDM1	89	49.380	Myotis_lucifugus
ENSSPAG00000004648	r3hdm1	91	63.467	ENSNLEG00000008622	R3HDM1	87	63.467	Nomascus_leucogenys
ENSSPAG00000004648	r3hdm1	94	43.802	ENSMEUG00000011784	R3HDM1	93	43.741	Notamacropus_eugenii
ENSSPAG00000004648	r3hdm1	99	47.182	ENSODEG00000008607	R3HDM1	100	65.529	Octodon_degus
ENSSPAG00000004648	r3hdm1	95	86.673	ENSONIG00000012017	r3hdm1	89	86.673	Oreochromis_niloticus
ENSSPAG00000004648	r3hdm1	99	47.805	ENSOANG00000007987	R3HDM1	89	48.718	Ornithorhynchus_anatinus
ENSSPAG00000004648	r3hdm1	99	50.198	ENSOCUG00000017366	R3HDM1	97	49.713	Oryctolagus_cuniculus
ENSSPAG00000004648	r3hdm1	100	75.767	ENSORLG00000004297	r3hdm1	100	76.278	Oryzias_latipes
ENSSPAG00000004648	r3hdm1	100	76.355	ENSORLG00015017355	r3hdm1	100	76.946	Oryzias_latipes_hsok
ENSSPAG00000004648	r3hdm1	54	81.835	ENSOMEG00000003882	-	99	82.931	Oryzias_melastigma
ENSSPAG00000004648	r3hdm1	99	50.000	ENSOGAG00000003136	R3HDM1	89	49.714	Otolemur_garnettii
ENSSPAG00000004648	r3hdm1	99	49.506	ENSOARG00000010788	R3HDM1	89	50.000	Ovis_aries
ENSSPAG00000004648	r3hdm1	91	63.467	ENSPPAG00000027858	R3HDM1	87	63.467	Pan_paniscus
ENSSPAG00000004648	r3hdm1	91	62.933	ENSPPRG00000002626	R3HDM1	87	62.933	Panthera_pardus
ENSSPAG00000004648	r3hdm1	91	63.200	ENSPTIG00000016581	R3HDM1	87	63.200	Panthera_tigris_altaica
ENSSPAG00000004648	r3hdm1	91	63.467	ENSPTRG00000012494	R3HDM1	87	63.467	Pan_troglodytes
ENSSPAG00000004648	r3hdm1	91	63.467	ENSPANG00000026448	R3HDM1	87	63.467	Papio_anubis
ENSSPAG00000004648	r3hdm1	83	74.013	ENSPKIG00000004328	r3hdm1	78	73.026	Paramormyrops_kingsleyae
ENSSPAG00000004648	r3hdm1	51	57.255	ENSPKIG00000011224	R3HDM1	96	56.863	Paramormyrops_kingsleyae
ENSSPAG00000004648	r3hdm1	99	49.360	ENSPSIG00000012915	R3HDM1	88	49.380	Pelodiscus_sinensis
ENSSPAG00000004648	r3hdm1	99	47.419	ENSPEMG00000015187	R3hdm1	100	65.870	Peromyscus_maniculatus_bairdii
ENSSPAG00000004648	r3hdm1	95	39.101	ENSPMAG00000003369	-	95	39.943	Petromyzon_marinus
ENSSPAG00000004648	r3hdm1	91	60.142	ENSPCIG00000002491	R3HDM1	88	60.377	Phascolarctos_cinereus
ENSSPAG00000004648	r3hdm1	100	77.851	ENSPFOG00000015036	r3hdm1	100	77.757	Poecilia_formosa
ENSSPAG00000004648	r3hdm1	100	80.448	ENSPLAG00000018042	r3hdm1	100	80.346	Poecilia_latipinna
ENSSPAG00000004648	r3hdm1	100	80.163	ENSPMEG00000023947	r3hdm1	100	80.061	Poecilia_mexicana
ENSSPAG00000004648	r3hdm1	100	80.887	ENSPREG00000007902	r3hdm1	100	80.788	Poecilia_reticulata
ENSSPAG00000004648	r3hdm1	99	48.491	ENSPPYG00000012815	R3HDM1	89	49.048	Pongo_abelii
ENSSPAG00000004648	r3hdm1	86	59.821	ENSPCAG00000006208	R3HDM1	75	60.534	Procavia_capensis
ENSSPAG00000004648	r3hdm1	91	59.517	ENSPCOG00000012698	R3HDM1	87	59.517	Propithecus_coquereli
ENSSPAG00000004648	r3hdm1	99	44.335	ENSPVAG00000006098	R3HDM1	89	43.947	Pteropus_vampyrus
ENSSPAG00000004648	r3hdm1	83	73.856	ENSPNAG00000013952	r3hdm1	83	68.011	Pygocentrus_nattereri
ENSSPAG00000004648	r3hdm1	85	72.876	ENSPNAG00000005436	R3HDM1	84	71.895	Pygocentrus_nattereri
ENSSPAG00000004648	r3hdm1	99	47.323	ENSRNOG00000004099	R3hdm1	89	47.315	Rattus_norvegicus
ENSSPAG00000004648	r3hdm1	82	71.942	ENSRBIG00000033317	R3HDM1	86	71.942	Rhinopithecus_bieti
ENSSPAG00000004648	r3hdm1	91	63.467	ENSRROG00000034534	R3HDM1	87	63.467	Rhinopithecus_roxellana
ENSSPAG00000004648	r3hdm1	91	63.200	ENSSBOG00000020389	R3HDM1	87	63.200	Saimiri_boliviensis_boliviensis
ENSSPAG00000004648	r3hdm1	99	49.116	ENSSHAG00000016999	R3HDM1	89	48.430	Sarcophilus_harrisii
ENSSPAG00000004648	r3hdm1	100	50.143	ENSSFOG00015019851	-	94	57.815	Scleropages_formosus
ENSSPAG00000004648	r3hdm1	86	72.930	ENSSFOG00015014134	r3hdm1	89	53.032	Scleropages_formosus
ENSSPAG00000004648	r3hdm1	100	85.029	ENSSMAG00000001669	r3hdm1	90	85.029	Scophthalmus_maximus
ENSSPAG00000004648	r3hdm1	100	90.702	ENSSDUG00000010749	r3hdm1	100	90.900	Seriola_dumerili
ENSSPAG00000004648	r3hdm1	100	90.730	ENSSLDG00000004499	r3hdm1	90	90.730	Seriola_lalandi_dorsalis
ENSSPAG00000004648	r3hdm1	58	53.746	ENSSARG00000000352	-	52	54.723	Sorex_araneus
ENSSPAG00000004648	r3hdm1	99	49.365	ENSSPUG00000004167	R3HDM1	88	49.523	Sphenodon_punctatus
ENSSPAG00000004648	r3hdm1	91	60.215	ENSSSCG00000015692	R3HDM1	87	60.215	Sus_scrofa
ENSSPAG00000004648	r3hdm1	98	49.258	ENSTGUG00000011750	R3HDM1	89	48.618	Taeniopygia_guttata
ENSSPAG00000004648	r3hdm1	100	78.953	ENSTRUG00000011654	r3hdm1	99	78.852	Takifugu_rubripes
ENSSPAG00000004648	r3hdm1	98	72.997	ENSTNIG00000010362	r3hdm1	99	73.393	Tetraodon_nigroviridis
ENSSPAG00000004648	r3hdm1	91	48.017	ENSTTRG00000003935	R3HDM1	80	48.770	Tursiops_truncatus
ENSSPAG00000004648	r3hdm1	69	64.000	ENSUAMG00000024806	R3HDM1	99	58.348	Ursus_americanus
ENSSPAG00000004648	r3hdm1	91	63.200	ENSUMAG00000005552	R3HDM1	87	63.200	Ursus_maritimus
ENSSPAG00000004648	r3hdm1	87	50.000	ENSVPAG00000007333	R3HDM1	74	49.716	Vicugna_pacos
ENSSPAG00000004648	r3hdm1	91	63.200	ENSVVUG00000006457	R3HDM1	88	63.200	Vulpes_vulpes
ENSSPAG00000004648	r3hdm1	99	44.413	ENSXETG00000019330	r3hdm1	99	45.524	Xenopus_tropicalis
ENSSPAG00000004648	r3hdm1	78	75.393	ENSXCOG00000017448	r3hdm1	93	75.916	Xiphophorus_couchianus
ENSSPAG00000004648	r3hdm1	100	79.469	ENSXMAG00000007885	r3hdm1	100	77.200	Xiphophorus_maculatus