EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSPAG00000006174 (Gene tree)
Gene ID: 103373466
Gene Symbol: cpsf4
Alias: nar|no arches
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Stegastes_partitus
Status: putative
Strand: Plus strand
Length: 4372 bases
Position: chrKK582059.1:68749-73120
Accession: 103373466
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPAP00000008088	zf-CCCH	PF00642.24	1.6e-20	1	2
ENSSPAP00000008088	zf-CCCH	PF00642.24	1.6e-20	2	2
ENSSPAP00000008088	zf-CCHC	PF00098.23	3.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPAT00000008242	-	723	XM_008303356	ENSSPAP00000008088	240 (aa)	XP_008301578	-

Gene Model

Click here to download ENSSPAG00000006174's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPAG00000006174's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPAG00000006174	cpsf4	100	87.295	ENSG00000160917	CPSF4	100	98.214	Homo_sapiens
ENSSPAG00000006174	cpsf4	63	75.141	ENSAPOG00000004921	cpsf4	100	75.141	Acanthochromis_polyacanthus
ENSSPAG00000006174	cpsf4	100	76.952	ENSAMEG00000006252	CPSF4	100	79.926	Ailuropoda_melanoleuca
ENSSPAG00000006174	cpsf4	100	91.701	ENSACIG00000009248	cpsf4	100	93.776	Amphilophus_citrinellus
ENSSPAG00000006174	cpsf4	100	87.170	ENSAOCG00000019616	cpsf4	100	87.170	Amphiprion_ocellaris
ENSSPAG00000006174	cpsf4	100	87.170	ENSAPEG00000011679	cpsf4	100	87.170	Amphiprion_percula
ENSSPAG00000006174	cpsf4	100	91.093	ENSATEG00000007010	cpsf4	100	91.093	Anabas_testudineus
ENSSPAG00000006174	cpsf4	100	75.836	ENSACAG00000012941	CPSF4	89	77.695	Anolis_carolinensis
ENSSPAG00000006174	cpsf4	100	76.952	ENSANAG00000021360	CPSF4	100	79.182	Aotus_nancymaae
ENSSPAG00000006174	cpsf4	100	89.167	ENSACLG00000010374	cpsf4	100	89.167	Astatotilapia_calliptera
ENSSPAG00000006174	cpsf4	100	81.111	ENSAMXG00000031647	cpsf4	100	81.111	Astyanax_mexicanus
ENSSPAG00000006174	cpsf4	100	87.243	ENSBTAG00000002090	CPSF4	100	87.243	Bos_taurus
ENSSPAG00000006174	cpsf4	100	76.981	ENSCJAG00000015826	CPSF4	100	79.182	Callithrix_jacchus
ENSSPAG00000006174	cpsf4	100	76.952	ENSCAFG00000015036	CPSF4	99	86.826	Canis_familiaris
ENSSPAG00000006174	cpsf4	100	72.491	ENSCAFG00020014462	CPSF4	100	75.465	Canis_lupus_dingo
ENSSPAG00000006174	cpsf4	100	76.580	ENSCHIG00000014313	CPSF4	100	79.554	Capra_hircus
ENSSPAG00000006174	cpsf4	100	88.115	ENSTSYG00000005712	-	100	88.115	Carlito_syrichta
ENSSPAG00000006174	cpsf4	88	82.407	ENSTSYG00000008195	-	99	82.222	Carlito_syrichta
ENSSPAG00000006174	cpsf4	100	80.000	ENSTSYG00000014604	-	100	80.000	Carlito_syrichta
ENSSPAG00000006174	cpsf4	80	74.324	ENSCAPG00000013881	CPSF4	88	77.928	Cavia_aperea
ENSSPAG00000006174	cpsf4	100	87.705	ENSCPOG00000001783	CPSF4	100	87.705	Cavia_porcellus
ENSSPAG00000006174	cpsf4	100	76.952	ENSCCAG00000028291	CPSF4	100	79.182	Cebus_capucinus
ENSSPAG00000006174	cpsf4	100	82.500	ENSCATG00000038440	CPSF4	100	82.500	Cercocebus_atys
ENSSPAG00000006174	cpsf4	100	76.952	ENSCLAG00000007050	CPSF4	100	79.182	Chinchilla_lanigera
ENSSPAG00000006174	cpsf4	100	76.952	ENSCSAG00000017795	CPSF4	100	79.182	Chlorocebus_sabaeus
ENSSPAG00000006174	cpsf4	69	78.313	ENSCPBG00000010269	-	100	78.313	Chrysemys_picta_bellii
ENSSPAG00000006174	cpsf4	78	74.537	ENSCPBG00000020869	CPSF4	100	77.778	Chrysemys_picta_bellii
ENSSPAG00000006174	cpsf4	96	55.906	ENSCING00000021080	-	97	56.299	Ciona_intestinalis
ENSSPAG00000006174	cpsf4	96	51.957	ENSCSAVG00000011469	-	97	51.957	Ciona_savignyi
ENSSPAG00000006174	cpsf4	100	82.158	ENSCANG00000019384	CPSF4	100	82.158	Colobus_angolensis_palliatus
ENSSPAG00000006174	cpsf4	100	87.705	ENSCGRG00001024184	Cpsf4	100	87.705	Cricetulus_griseus_chok1gshd
ENSSPAG00000006174	cpsf4	100	76.952	ENSCGRG00000013892	Cpsf4	100	79.926	Cricetulus_griseus_crigri
ENSSPAG00000006174	cpsf4	100	86.038	ENSCSEG00000019055	cpsf4	100	86.038	Cynoglossus_semilaevis
ENSSPAG00000006174	cpsf4	100	85.283	ENSCVAG00000016528	cpsf4	100	85.283	Cyprinodon_variegatus
ENSSPAG00000006174	cpsf4	100	78.967	ENSDARG00000020217	cpsf4	100	80.443	Danio_rerio
ENSSPAG00000006174	cpsf4	100	76.952	ENSDNOG00000006344	CPSF4	100	79.926	Dasypus_novemcinctus
ENSSPAG00000006174	cpsf4	78	74.654	ENSDORG00000000742	Cpsf4	100	78.341	Dipodomys_ordii
ENSSPAG00000006174	cpsf4	100	54.452	FBgn0015621	Clp	99	53.767	Drosophila_melanogaster
ENSSPAG00000006174	cpsf4	78	95.455	ENSETEG00000002608	CPSF4	70	95.455	Echinops_telfairi
ENSSPAG00000006174	cpsf4	99	71.667	ENSEBUG00000012552	cpsf4	98	71.667	Eptatretus_burgeri
ENSSPAG00000006174	cpsf4	100	87.705	ENSEASG00005002487	CPSF4	100	87.705	Equus_asinus_asinus
ENSSPAG00000006174	cpsf4	100	76.952	ENSECAG00000007525	CPSF4	100	79.926	Equus_caballus
ENSSPAG00000006174	cpsf4	59	94.030	ENSEEUG00000002158	CPSF4	73	94.030	Erinaceus_europaeus
ENSSPAG00000006174	cpsf4	100	80.882	ENSELUG00000011481	cpsf4	100	80.882	Esox_lucius
ENSSPAG00000006174	cpsf4	100	76.952	ENSFCAG00000015070	CPSF4	100	79.926	Felis_catus
ENSSPAG00000006174	cpsf4	69	55.814	ENSFALG00000012906	-	100	55.814	Ficedula_albicollis
ENSSPAG00000006174	cpsf4	100	86.831	ENSFALG00000013799	CPSF4	100	86.831	Ficedula_albicollis
ENSSPAG00000006174	cpsf4	89	75.309	ENSFDAG00000014092	CPSF4	100	78.601	Fukomys_damarensis
ENSSPAG00000006174	cpsf4	100	84.151	ENSFHEG00000010880	cpsf4	100	84.151	Fundulus_heteroclitus
ENSSPAG00000006174	cpsf4	100	85.659	ENSGMOG00000002330	cpsf4	100	85.659	Gadus_morhua
ENSSPAG00000006174	cpsf4	64	35.714	ENSGALG00000004441	-	92	35.714	Gallus_gallus
ENSSPAG00000006174	cpsf4	100	87.243	ENSGALG00000004714	CPSF4	100	87.243	Gallus_gallus
ENSSPAG00000006174	cpsf4	100	84.470	ENSGAFG00000010580	cpsf4	100	84.470	Gambusia_affinis
ENSSPAG00000006174	cpsf4	100	87.795	ENSGACG00000007792	cpsf4	100	87.795	Gasterosteus_aculeatus
ENSSPAG00000006174	cpsf4	76	75.275	ENSGAGG00000020579	-	100	75.275	Gopherus_agassizii
ENSSPAG00000006174	cpsf4	100	77.323	ENSGAGG00000021835	CPSF4	100	79.926	Gopherus_agassizii
ENSSPAG00000006174	cpsf4	100	76.952	ENSGGOG00000015131	CPSF4	100	79.182	Gorilla_gorilla
ENSSPAG00000006174	cpsf4	100	86.792	ENSHBUG00000013699	cpsf4	100	86.792	Haplochromis_burtoni
ENSSPAG00000006174	cpsf4	100	76.384	ENSHGLG00000017150	CPSF4	100	78.967	Heterocephalus_glaber_female
ENSSPAG00000006174	cpsf4	85	72.881	ENSHGLG00100009215	-	100	75.847	Heterocephalus_glaber_male
ENSSPAG00000006174	cpsf4	100	57.917	ENSHGLG00100017302	-	100	57.917	Heterocephalus_glaber_male
ENSSPAG00000006174	cpsf4	100	84.906	ENSHCOG00000004397	cpsf4	100	84.906	Hippocampus_comes
ENSSPAG00000006174	cpsf4	100	79.705	ENSIPUG00000017147	cpsf4	100	80.074	Ictalurus_punctatus
ENSSPAG00000006174	cpsf4	100	87.654	ENSSTOG00000001688	CPSF4	100	87.654	Ictidomys_tridecemlineatus
ENSSPAG00000006174	cpsf4	100	76.952	ENSJJAG00000019426	Cpsf4	100	79.182	Jaculus_jaculus
ENSSPAG00000006174	cpsf4	100	83.774	ENSKMAG00000015642	cpsf4	100	83.774	Kryptolebias_marmoratus
ENSSPAG00000006174	cpsf4	100	63.673	ENSLACG00000018470	-	100	63.673	Latimeria_chalumnae
ENSSPAG00000006174	cpsf4	100	78.519	ENSLACG00000010938	CPSF4	100	78.519	Latimeria_chalumnae
ENSSPAG00000006174	cpsf4	100	76.952	ENSLOCG00000004814	cpsf4	100	80.297	Lepisosteus_oculatus
ENSSPAG00000006174	cpsf4	100	77.323	ENSLAFG00000000159	CPSF4	100	80.297	Loxodonta_africana
ENSSPAG00000006174	cpsf4	100	82.158	ENSMFAG00000001462	CPSF4	100	87.958	Macaca_fascicularis
ENSSPAG00000006174	cpsf4	100	76.952	ENSMMUG00000019191	CPSF4	100	79.182	Macaca_mulatta
ENSSPAG00000006174	cpsf4	100	82.158	ENSMNEG00000032306	CPSF4	100	82.158	Macaca_nemestrina
ENSSPAG00000006174	cpsf4	100	82.500	ENSMLEG00000034721	CPSF4	100	82.500	Mandrillus_leucophaeus
ENSSPAG00000006174	cpsf4	100	86.466	ENSMAMG00000006244	cpsf4	100	86.466	Mastacembelus_armatus
ENSSPAG00000006174	cpsf4	100	86.792	ENSMZEG00005007515	cpsf4	100	86.792	Maylandia_zebra
ENSSPAG00000006174	cpsf4	86	86.603	ENSMGAG00000004235	CPSF4	100	86.603	Meleagris_gallopavo
ENSSPAG00000006174	cpsf4	100	76.952	ENSMAUG00000021253	Cpsf4	100	79.926	Mesocricetus_auratus
ENSSPAG00000006174	cpsf4	100	77.323	ENSMICG00000017429	CPSF4	100	79.554	Microcebus_murinus
ENSSPAG00000006174	cpsf4	100	76.952	ENSMOCG00000014901	Cpsf4	100	79.926	Microtus_ochrogaster
ENSSPAG00000006174	cpsf4	100	86.090	ENSMMOG00000001813	cpsf4	100	86.090	Mola_mola
ENSSPAG00000006174	cpsf4	100	77.695	ENSMODG00000001367	CPSF4	100	80.669	Monodelphis_domestica
ENSSPAG00000006174	cpsf4	100	84.586	ENSMALG00000012611	cpsf4	100	84.586	Monopterus_albus
ENSSPAG00000006174	cpsf4	100	87.705	MGP_CAROLIEiJ_G0028012	Cpsf4	100	87.705	Mus_caroli
ENSSPAG00000006174	cpsf4	100	87.705	ENSMUSG00000029625	Cpsf4	100	87.705	Mus_musculus
ENSSPAG00000006174	cpsf4	100	87.705	MGP_PahariEiJ_G0024581	Cpsf4	100	87.705	Mus_pahari
ENSSPAG00000006174	cpsf4	100	87.295	MGP_SPRETEiJ_G0029013	Cpsf4	100	87.295	Mus_spretus
ENSSPAG00000006174	cpsf4	100	76.952	ENSMPUG00000016508	CPSF4	100	79.926	Mustela_putorius_furo
ENSSPAG00000006174	cpsf4	86	86.603	ENSMLUG00000010980	CPSF4	100	86.603	Myotis_lucifugus
ENSSPAG00000006174	cpsf4	100	77.323	ENSNGAG00000001567	Cpsf4	100	80.297	Nannospalax_galili
ENSSPAG00000006174	cpsf4	90	85.062	ENSNBRG00000003943	cpsf4	98	85.062	Neolamprologus_brichardi
ENSSPAG00000006174	cpsf4	100	87.295	ENSNLEG00000011074	CPSF4	100	87.295	Nomascus_leucogenys
ENSSPAG00000006174	cpsf4	100	77.695	ENSMEUG00000006955	CPSF4	100	80.669	Notamacropus_eugenii
ENSSPAG00000006174	cpsf4	100	76.580	ENSOPRG00000013663	CPSF4	100	78.810	Ochotona_princeps
ENSSPAG00000006174	cpsf4	100	67.729	ENSODEG00000009779	-	100	67.729	Octodon_degus
ENSSPAG00000006174	cpsf4	98	74.167	ENSODEG00000018283	-	91	74.167	Octodon_degus
ENSSPAG00000006174	cpsf4	100	76.952	ENSODEG00000011181	-	100	79.926	Octodon_degus
ENSSPAG00000006174	cpsf4	100	87.170	ENSONIG00000008495	cpsf4	100	87.170	Oreochromis_niloticus
ENSSPAG00000006174	cpsf4	100	50.719	ENSOANG00000009568	-	100	50.719	Ornithorhynchus_anatinus
ENSSPAG00000006174	cpsf4	86	78.632	ENSOANG00000007729	CPSF4	100	78.632	Ornithorhynchus_anatinus
ENSSPAG00000006174	cpsf4	100	76.580	ENSOCUG00000002437	CPSF4	70	78.810	Oryctolagus_cuniculus
ENSSPAG00000006174	cpsf4	100	85.283	ENSORLG00000022798	cpsf4	100	85.283	Oryzias_latipes
ENSSPAG00000006174	cpsf4	100	85.283	ENSORLG00020008548	cpsf4	100	85.283	Oryzias_latipes_hni
ENSSPAG00000006174	cpsf4	100	84.906	ENSORLG00015019575	cpsf4	100	84.906	Oryzias_latipes_hsok
ENSSPAG00000006174	cpsf4	100	85.283	ENSOMEG00000005176	cpsf4	100	85.283	Oryzias_melastigma
ENSSPAG00000006174	cpsf4	100	76.952	ENSOGAG00000010884	CPSF4	100	79.182	Otolemur_garnettii
ENSSPAG00000006174	cpsf4	100	69.231	ENSOARG00000018668	CPSF4	100	69.231	Ovis_aries
ENSSPAG00000006174	cpsf4	100	76.952	ENSPPAG00000043355	CPSF4	100	79.182	Pan_paniscus
ENSSPAG00000006174	cpsf4	100	76.952	ENSPPRG00000003134	CPSF4	100	79.926	Panthera_pardus
ENSSPAG00000006174	cpsf4	89	76.033	ENSPTIG00000005604	CPSF4	90	78.512	Panthera_tigris_altaica
ENSSPAG00000006174	cpsf4	100	76.952	ENSPTRG00000019453	CPSF4	100	79.182	Pan_troglodytes
ENSSPAG00000006174	cpsf4	100	82.158	ENSPANG00000023123	CPSF4	100	82.158	Papio_anubis
ENSSPAG00000006174	cpsf4	100	79.927	ENSPKIG00000014278	cpsf4	100	79.927	Paramormyrops_kingsleyae
ENSSPAG00000006174	cpsf4	79	65.625	ENSPSIG00000018198	-	100	65.625	Pelodiscus_sinensis
ENSSPAG00000006174	cpsf4	78	74.074	ENSPSIG00000011229	CPSF4	100	77.315	Pelodiscus_sinensis
ENSSPAG00000006174	cpsf4	100	87.500	ENSPMGG00000017735	cpsf4	100	87.500	Periophthalmus_magnuspinnatus
ENSSPAG00000006174	cpsf4	100	76.952	ENSPEMG00000004508	Cpsf4	100	79.926	Peromyscus_maniculatus_bairdii
ENSSPAG00000006174	cpsf4	100	77.695	ENSPCIG00000024776	CPSF4	100	80.669	Phascolarctos_cinereus
ENSSPAG00000006174	cpsf4	100	84.470	ENSPFOG00000014912	cpsf4	100	84.470	Poecilia_formosa
ENSSPAG00000006174	cpsf4	100	83.740	ENSPLAG00000009599	cpsf4	100	83.740	Poecilia_latipinna
ENSSPAG00000006174	cpsf4	100	84.470	ENSPMEG00000009790	cpsf4	100	84.470	Poecilia_mexicana
ENSSPAG00000006174	cpsf4	100	84.091	ENSPREG00000018166	cpsf4	100	84.091	Poecilia_reticulata
ENSSPAG00000006174	cpsf4	85	74.786	ENSPPYG00000017378	CPSF4	100	77.350	Pongo_abelii
ENSSPAG00000006174	cpsf4	100	77.323	ENSPCAG00000001892	CPSF4	100	80.297	Procavia_capensis
ENSSPAG00000006174	cpsf4	100	77.323	ENSPCOG00000012771	CPSF4	100	79.926	Propithecus_coquereli
ENSSPAG00000006174	cpsf4	100	71.747	ENSPVAG00000007531	CPSF4	100	74.721	Pteropus_vampyrus
ENSSPAG00000006174	cpsf4	100	86.792	ENSPNYG00000018559	cpsf4	100	86.792	Pundamilia_nyererei
ENSSPAG00000006174	cpsf4	100	81.481	ENSPNAG00000003736	cpsf4	100	82.222	Pygocentrus_nattereri
ENSSPAG00000006174	cpsf4	100	87.654	ENSRNOG00000000985	Cpsf4	100	87.654	Rattus_norvegicus
ENSSPAG00000006174	cpsf4	85	75.214	ENSRBIG00000033886	CPSF4	100	77.778	Rhinopithecus_bieti
ENSSPAG00000006174	cpsf4	100	87.295	ENSRROG00000040431	CPSF4	100	87.295	Rhinopithecus_roxellana
ENSSPAG00000006174	cpsf4	100	76.952	ENSSBOG00000020493	CPSF4	100	87.958	Saimiri_boliviensis_boliviensis
ENSSPAG00000006174	cpsf4	100	77.695	ENSSHAG00000011533	CPSF4	100	80.669	Sarcophilus_harrisii
ENSSPAG00000006174	cpsf4	100	78.261	ENSSFOG00015007883	cpsf4	100	78.261	Scleropages_formosus
ENSSPAG00000006174	cpsf4	100	91.393	ENSSMAG00000006374	cpsf4	100	91.393	Scophthalmus_maximus
ENSSPAG00000006174	cpsf4	100	88.346	ENSSDUG00000018887	cpsf4	100	88.346	Seriola_dumerili
ENSSPAG00000006174	cpsf4	100	88.346	ENSSLDG00000019078	cpsf4	100	88.346	Seriola_lalandi_dorsalis
ENSSPAG00000006174	cpsf4	85	75.214	ENSSARG00000012416	CPSF4	100	77.778	Sorex_araneus
ENSSPAG00000006174	cpsf4	95	63.478	ENSSPUG00000014803	-	97	63.478	Sphenodon_punctatus
ENSSPAG00000006174	cpsf4	100	79.182	ENSSPUG00000003549	CPSF4	100	79.182	Sphenodon_punctatus
ENSSPAG00000006174	cpsf4	100	87.295	ENSSSCG00000026896	CPSF4	100	87.295	Sus_scrofa
ENSSPAG00000006174	cpsf4	100	85.714	ENSTGUG00000007552	CPSF4	100	85.714	Taeniopygia_guttata
ENSSPAG00000006174	cpsf4	100	84.411	ENSTRUG00000024220	cpsf4	100	84.411	Takifugu_rubripes
ENSSPAG00000006174	cpsf4	100	85.171	ENSTNIG00000006265	cpsf4	100	85.171	Tetraodon_nigroviridis
ENSSPAG00000006174	cpsf4	85	68.376	ENSTBEG00000011406	CPSF4	100	69.658	Tupaia_belangeri
ENSSPAG00000006174	cpsf4	83	95.455	ENSTTRG00000003007	CPSF4	100	72.862	Tursiops_truncatus
ENSSPAG00000006174	cpsf4	91	86.878	ENSUAMG00000008051	CPSF4	85	86.878	Ursus_americanus
ENSSPAG00000006174	cpsf4	100	87.654	ENSUMAG00000009474	CPSF4	100	87.654	Ursus_maritimus
ENSSPAG00000006174	cpsf4	100	87.705	ENSVVUG00000008824	CPSF4	100	87.705	Vulpes_vulpes
ENSSPAG00000006174	cpsf4	99	58.647	ENSXETG00000004641	cpsf4l	99	58.647	Xenopus_tropicalis
ENSSPAG00000006174	cpsf4	100	73.118	ENSXETG00000009892	cpsf4	100	75.986	Xenopus_tropicalis
ENSSPAG00000006174	cpsf4	100	84.091	ENSXCOG00000016040	cpsf4	100	84.091	Xiphophorus_couchianus
ENSSPAG00000006174	cpsf4	100	84.470	ENSXMAG00000024670	cpsf4	100	84.470	Xiphophorus_maculatus