EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSPAG00000006325 (Gene tree)
Gene ID: 103363422
Gene Symbol: urb1
Alias: mp:zf637-1-000544|zf637-1-000544
Full Name: URB1 ribosome biogenesis homolog
Gene Type: protein_coding
Species: Stegastes_partitus
Status: putative
Strand: Minus strand
Length: 12833 bases
Position: chrKK580730.1:31320-44152
Accession: 103363422
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPAP00000009151	Npa1	PF11707.8	1.6e-84	1	1
ENSSPAP00000009388	Npa1	PF11707.8	2e-84	1	1
ENSSPAP00000009311	Npa1	PF11707.8	2.3e-84	1	1
ENSSPAP00000009332	Npa1	PF11707.8	1.1e-57	1	2
ENSSPAP00000009332	Npa1	PF11707.8	1.1e-57	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPAT00000009553	-	6432	-	ENSSPAP00000009388	2143 (aa)	-	-
ENSSPAT00000009497	-	6561	-	ENSSPAP00000009332	2186 (aa)	-	-
ENSSPAT00000009313	-	6720	XM_008290177	ENSSPAP00000009151	2239 (aa)	XP_008288399	-
ENSSPAT00000009475	-	6627	-	ENSSPAP00000009311	2208 (aa)	-	-

Gene Model

Click here to download ENSSPAG00000006325's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPAG00000006325's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPAG00000006325	urb1	99	44.586	ENSG00000142207	URB1	99	44.222	Homo_sapiens
ENSSPAG00000006325	urb1	97	89.317	ENSAPOG00000020308	urb1	99	89.317	Acanthochromis_polyacanthus
ENSSPAG00000006325	urb1	99	43.951	ENSAMEG00000011998	URB1	99	44.038	Ailuropoda_melanoleuca
ENSSPAG00000006325	urb1	98	71.025	ENSACIG00000003248	urb1	99	71.025	Amphilophus_citrinellus
ENSSPAG00000006325	urb1	99	78.819	ENSAOCG00000010364	urb1	99	78.819	Amphiprion_ocellaris
ENSSPAG00000006325	urb1	97	87.821	ENSAPEG00000010758	urb1	99	87.821	Amphiprion_percula
ENSSPAG00000006325	urb1	99	76.376	ENSATEG00000011790	urb1	99	76.376	Anabas_testudineus
ENSSPAG00000006325	urb1	97	46.610	ENSAPLG00000012791	URB1	99	46.744	Anas_platyrhynchos
ENSSPAG00000006325	urb1	100	50.000	ENSACAG00000002817	URB1	99	44.723	Anolis_carolinensis
ENSSPAG00000006325	urb1	99	44.722	ENSANAG00000024617	URB1	99	44.512	Aotus_nancymaae
ENSSPAG00000006325	urb1	99	77.910	ENSACLG00000024865	urb1	99	77.778	Astatotilapia_calliptera
ENSSPAG00000006325	urb1	99	49.532	ENSAMXG00000012306	urb1	99	49.274	Astyanax_mexicanus
ENSSPAG00000006325	urb1	99	43.205	ENSBTAG00000012412	URB1	99	43.074	Bos_taurus
ENSSPAG00000006325	urb1	99	44.381	ENSCJAG00000009118	URB1	99	44.247	Callithrix_jacchus
ENSSPAG00000006325	urb1	99	43.424	ENSCAFG00000008892	URB1	99	43.338	Canis_familiaris
ENSSPAG00000006325	urb1	99	43.111	ENSCAFG00020025987	-	99	43.024	Canis_lupus_dingo
ENSSPAG00000006325	urb1	99	42.641	ENSCAFG00020025994	-	99	42.554	Canis_lupus_dingo
ENSSPAG00000006325	urb1	99	43.546	ENSCHIG00000015645	URB1	99	43.416	Capra_hircus
ENSSPAG00000006325	urb1	99	44.092	ENSTSYG00000013286	URB1	99	44.005	Carlito_syrichta
ENSSPAG00000006325	urb1	98	43.098	ENSCAPG00000015589	URB1	99	43.098	Cavia_aperea
ENSSPAG00000006325	urb1	99	44.137	ENSCPOG00000006748	URB1	99	44.137	Cavia_porcellus
ENSSPAG00000006325	urb1	99	44.508	ENSCCAG00000021299	URB1	99	44.372	Cebus_capucinus
ENSSPAG00000006325	urb1	99	44.343	ENSCATG00000042630	URB1	99	44.613	Cercocebus_atys
ENSSPAG00000006325	urb1	99	45.000	ENSCLAG00000005262	URB1	99	44.913	Chinchilla_lanigera
ENSSPAG00000006325	urb1	98	50.331	ENSCSAG00000009584	URB1	95	52.318	Chlorocebus_sabaeus
ENSSPAG00000006325	urb1	99	46.941	ENSCPBG00000006454	URB1	99	47.072	Chrysemys_picta_bellii
ENSSPAG00000006325	urb1	99	44.319	ENSCANG00000031088	URB1	99	44.657	Colobus_angolensis_palliatus
ENSSPAG00000006325	urb1	99	43.995	ENSCGRG00001010616	Urb1	99	43.777	Cricetulus_griseus_chok1gshd
ENSSPAG00000006325	urb1	98	43.966	ENSCGRG00000015840	Urb1	99	43.917	Cricetulus_griseus_crigri
ENSSPAG00000006325	urb1	99	68.521	ENSCSEG00000012616	urb1	99	68.521	Cynoglossus_semilaevis
ENSSPAG00000006325	urb1	93	72.932	ENSCVAG00000009076	urb1	98	74.125	Cyprinodon_variegatus
ENSSPAG00000006325	urb1	99	60.541	ENSDARG00000060308	urb1	97	60.541	Danio_rerio
ENSSPAG00000006325	urb1	85	52.910	ENSDNOG00000015586	URB1	99	47.980	Dasypus_novemcinctus
ENSSPAG00000006325	urb1	99	44.169	ENSDORG00000006735	Urb1	99	44.125	Dipodomys_ordii
ENSSPAG00000006325	urb1	93	52.000	ENSETEG00000009080	URB1	92	52.182	Echinops_telfairi
ENSSPAG00000006325	urb1	99	43.927	ENSEASG00005007711	URB1	99	45.696	Equus_asinus_asinus
ENSSPAG00000006325	urb1	95	54.638	ENSECAG00000013206	URB1	99	54.638	Equus_caballus
ENSSPAG00000006325	urb1	54	58.824	ENSEEUG00000003626	-	54	58.824	Erinaceus_europaeus
ENSSPAG00000006325	urb1	99	57.262	ENSELUG00000020516	urb1	99	57.394	Esox_lucius
ENSSPAG00000006325	urb1	99	43.448	ENSFCAG00000002177	URB1	99	43.404	Felis_catus
ENSSPAG00000006325	urb1	97	43.174	ENSFALG00000004636	URB1	98	43.218	Ficedula_albicollis
ENSSPAG00000006325	urb1	99	43.967	ENSFDAG00000007288	URB1	95	43.663	Fukomys_damarensis
ENSSPAG00000006325	urb1	99	66.977	ENSFHEG00000000202	urb1	99	69.651	Fundulus_heteroclitus
ENSSPAG00000006325	urb1	93	59.545	ENSGMOG00000001838	urb1	94	59.370	Gadus_morhua
ENSSPAG00000006325	urb1	99	47.030	ENSGALG00000015887	URB1	98	47.118	Gallus_gallus
ENSSPAG00000006325	urb1	99	69.501	ENSGAFG00000020694	urb1	99	73.348	Gambusia_affinis
ENSSPAG00000006325	urb1	99	75.477	ENSGACG00000011703	urb1	99	75.477	Gasterosteus_aculeatus
ENSSPAG00000006325	urb1	99	47.051	ENSGAGG00000022544	URB1	99	47.051	Gopherus_agassizii
ENSSPAG00000006325	urb1	99	44.605	ENSGGOG00000000285	URB1	99	44.309	Gorilla_gorilla
ENSSPAG00000006325	urb1	99	77.690	ENSHBUG00000001904	urb1	99	77.557	Haplochromis_burtoni
ENSSPAG00000006325	urb1	99	43.152	ENSHGLG00000004907	URB1	99	42.980	Heterocephalus_glaber_female
ENSSPAG00000006325	urb1	99	43.652	ENSHGLG00100010749	URB1	99	43.478	Heterocephalus_glaber_male
ENSSPAG00000006325	urb1	79	67.683	ENSHCOG00000018683	urb1	98	68.605	Hippocampus_comes
ENSSPAG00000006325	urb1	99	49.079	ENSIPUG00000014721	urb1	99	49.079	Ictalurus_punctatus
ENSSPAG00000006325	urb1	99	44.562	ENSSTOG00000004539	URB1	99	44.150	Ictidomys_tridecemlineatus
ENSSPAG00000006325	urb1	93	74.393	ENSKMAG00000006001	urb1	99	74.393	Kryptolebias_marmoratus
ENSSPAG00000006325	urb1	97	68.829	ENSLBEG00000027208	urb1	100	68.756	Labrus_bergylta
ENSSPAG00000006325	urb1	97	58.621	ENSLACG00000017059	URB1	94	58.621	Latimeria_chalumnae
ENSSPAG00000006325	urb1	99	53.444	ENSLOCG00000009190	urb1	99	53.444	Lepisosteus_oculatus
ENSSPAG00000006325	urb1	99	44.522	ENSLAFG00000010407	URB1	99	44.653	Loxodonta_africana
ENSSPAG00000006325	urb1	99	44.170	ENSMFAG00000034391	URB1	96	44.396	Macaca_fascicularis
ENSSPAG00000006325	urb1	99	44.194	ENSMMUG00000010295	URB1	99	44.464	Macaca_mulatta
ENSSPAG00000006325	urb1	99	43.720	ENSMNEG00000032981	URB1	99	43.807	Macaca_nemestrina
ENSSPAG00000006325	urb1	99	44.613	ENSMLEG00000041435	URB1	99	44.700	Mandrillus_leucophaeus
ENSSPAG00000006325	urb1	100	72.703	ENSMAMG00000011238	urb1	99	72.703	Mastacembelus_armatus
ENSSPAG00000006325	urb1	99	78.235	ENSMZEG00005011862	urb1	99	78.098	Maylandia_zebra
ENSSPAG00000006325	urb1	97	47.196	ENSMGAG00000014512	URB1	98	47.465	Meleagris_gallopavo
ENSSPAG00000006325	urb1	92	52.108	ENSMAUG00000010516	Urb1	99	51.684	Mesocricetus_auratus
ENSSPAG00000006325	urb1	99	44.387	ENSMICG00000016424	URB1	99	44.125	Microcebus_murinus
ENSSPAG00000006325	urb1	99	43.423	ENSMOCG00000012613	Urb1	99	43.516	Microtus_ochrogaster
ENSSPAG00000006325	urb1	99	44.435	ENSMODG00000021076	URB1	99	44.319	Monodelphis_domestica
ENSSPAG00000006325	urb1	99	71.776	ENSMALG00000017411	urb1	99	71.776	Monopterus_albus
ENSSPAG00000006325	urb1	99	43.654	MGP_CAROLIEiJ_G0020948	Urb1	99	43.654	Mus_caroli
ENSSPAG00000006325	urb1	99	43.703	ENSMUSG00000039929	Urb1	99	43.703	Mus_musculus
ENSSPAG00000006325	urb1	99	43.654	MGP_PahariEiJ_G0016653	Urb1	99	43.610	Mus_pahari
ENSSPAG00000006325	urb1	99	43.514	MGP_SPRETEiJ_G0021854	Urb1	99	43.514	Mus_spretus
ENSSPAG00000006325	urb1	99	44.270	ENSMPUG00000001123	URB1	99	44.183	Mustela_putorius_furo
ENSSPAG00000006325	urb1	99	52.000	ENSNGAG00000001905	Urb1	96	52.000	Nannospalax_galili
ENSSPAG00000006325	urb1	83	74.005	ENSNBRG00000001049	urb1	99	73.731	Neolamprologus_brichardi
ENSSPAG00000006325	urb1	99	43.039	ENSNLEG00000026872	URB1	99	42.807	Nomascus_leucogenys
ENSSPAG00000006325	urb1	93	54.737	ENSMEUG00000010828	URB1	96	41.105	Notamacropus_eugenii
ENSSPAG00000006325	urb1	99	43.065	ENSOPRG00000013482	URB1	99	43.065	Ochotona_princeps
ENSSPAG00000006325	urb1	99	43.802	ENSODEG00000002587	URB1	99	43.647	Octodon_degus
ENSSPAG00000006325	urb1	99	78.184	ENSONIG00000005599	urb1	99	78.140	Oreochromis_niloticus
ENSSPAG00000006325	urb1	99	44.507	ENSOCUG00000009381	URB1	99	44.512	Oryctolagus_cuniculus
ENSSPAG00000006325	urb1	100	69.947	ENSORLG00000003429	urb1	100	69.947	Oryzias_latipes
ENSSPAG00000006325	urb1	100	69.339	ENSORLG00020013785	urb1	100	69.339	Oryzias_latipes_hni
ENSSPAG00000006325	urb1	93	76.243	ENSORLG00015019421	urb1	99	76.243	Oryzias_latipes_hsok
ENSSPAG00000006325	urb1	75	77.113	ENSOMEG00000002094	urb1	97	77.113	Oryzias_melastigma
ENSSPAG00000006325	urb1	99	44.488	ENSOGAG00000017140	URB1	99	44.357	Otolemur_garnettii
ENSSPAG00000006325	urb1	95	47.719	ENSOARG00000013679	URB1	98	47.314	Ovis_aries
ENSSPAG00000006325	urb1	99	44.518	ENSPPAG00000003423	URB1	99	44.222	Pan_paniscus
ENSSPAG00000006325	urb1	99	43.391	ENSPPRG00000023131	URB1	99	43.348	Panthera_pardus
ENSSPAG00000006325	urb1	88	45.450	ENSPTIG00000016125	URB1	94	44.648	Panthera_tigris_altaica
ENSSPAG00000006325	urb1	99	44.430	ENSPTRG00000013852	URB1	99	44.136	Pan_troglodytes
ENSSPAG00000006325	urb1	99	44.387	ENSPANG00000021964	URB1	99	44.657	Papio_anubis
ENSSPAG00000006325	urb1	99	53.409	ENSPKIG00000003683	urb1	99	53.671	Paramormyrops_kingsleyae
ENSSPAG00000006325	urb1	99	43.946	ENSPEMG00000021205	Urb1	99	43.995	Peromyscus_maniculatus_bairdii
ENSSPAG00000006325	urb1	73	35.282	ENSPMAG00000009733	URB1	99	33.352	Petromyzon_marinus
ENSSPAG00000006325	urb1	99	43.728	ENSPCIG00000016350	URB1	99	44.151	Phascolarctos_cinereus
ENSSPAG00000006325	urb1	97	71.162	ENSPLAG00000004371	urb1	99	71.207	Poecilia_latipinna
ENSSPAG00000006325	urb1	99	71.447	ENSPMEG00000006634	urb1	99	71.492	Poecilia_mexicana
ENSSPAG00000006325	urb1	99	71.233	ENSPREG00000013453	urb1	99	71.322	Poecilia_reticulata
ENSSPAG00000006325	urb1	99	44.444	ENSPPYG00000011359	URB1	99	44.289	Pongo_abelii
ENSSPAG00000006325	urb1	99	39.747	ENSPCAG00000007430	URB1	99	39.616	Procavia_capensis
ENSSPAG00000006325	urb1	99	44.730	ENSPCOG00000022695	URB1	99	44.604	Propithecus_coquereli
ENSSPAG00000006325	urb1	99	43.567	ENSPVAG00000000889	URB1	99	43.437	Pteropus_vampyrus
ENSSPAG00000006325	urb1	99	74.721	ENSPNYG00000010589	urb1	99	74.721	Pundamilia_nyererei
ENSSPAG00000006325	urb1	99	61.622	ENSPNAG00000019324	urb1	97	61.622	Pygocentrus_nattereri
ENSSPAG00000006325	urb1	99	43.175	ENSRNOG00000002080	Urb1	99	43.106	Rattus_norvegicus
ENSSPAG00000006325	urb1	99	44.125	ENSRBIG00000033122	URB1	99	44.261	Rhinopithecus_bieti
ENSSPAG00000006325	urb1	99	44.125	ENSRROG00000040237	URB1	99	44.261	Rhinopithecus_roxellana
ENSSPAG00000006325	urb1	99	44.654	ENSSBOG00000027672	URB1	99	44.444	Saimiri_boliviensis_boliviensis
ENSSPAG00000006325	urb1	99	44.766	ENSSHAG00000005140	URB1	100	44.766	Sarcophilus_harrisii
ENSSPAG00000006325	urb1	93	56.339	ENSSFOG00015000339	urb1	99	56.569	Scleropages_formosus
ENSSPAG00000006325	urb1	99	77.373	ENSSMAG00000003782	urb1	99	77.504	Scophthalmus_maximus
ENSSPAG00000006325	urb1	99	80.740	ENSSDUG00000012313	urb1	99	80.740	Seriola_dumerili
ENSSPAG00000006325	urb1	99	80.212	ENSSLDG00000023179	urb1	99	80.212	Seriola_lalandi_dorsalis
ENSSPAG00000006325	urb1	99	45.143	ENSSPUG00000012447	URB1	99	45.186	Sphenodon_punctatus
ENSSPAG00000006325	urb1	99	43.739	ENSSSCG00000032024	URB1	99	43.651	Sus_scrofa
ENSSPAG00000006325	urb1	74	47.927	ENSTGUG00000013442	URB1	100	47.927	Taeniopygia_guttata
ENSSPAG00000006325	urb1	99	69.571	ENSTRUG00000009372	urb1	99	69.571	Takifugu_rubripes
ENSSPAG00000006325	urb1	99	66.977	ENSTNIG00000016277	urb1	99	66.977	Tetraodon_nigroviridis
ENSSPAG00000006325	urb1	78	49.858	ENSTBEG00000010044	URB1	79	49.858	Tupaia_belangeri
ENSSPAG00000006325	urb1	88	62.500	ENSTTRG00000007712	URB1	87	62.500	Tursiops_truncatus
ENSSPAG00000006325	urb1	99	43.685	ENSUAMG00000012231	URB1	99	43.728	Ursus_americanus
ENSSPAG00000006325	urb1	88	45.770	ENSUMAG00000017419	URB1	94	45.848	Ursus_maritimus
ENSSPAG00000006325	urb1	65	64.286	ENSVPAG00000001164	URB1	67	63.889	Vicugna_pacos
ENSSPAG00000006325	urb1	95	52.899	ENSVVUG00000000551	URB1	99	43.341	Vulpes_vulpes
ENSSPAG00000006325	urb1	99	58.824	ENSXETG00000009895	urb1	97	58.824	Xenopus_tropicalis
ENSSPAG00000006325	urb1	99	68.064	ENSXCOG00000005500	urb1	99	69.921	Xiphophorus_couchianus
ENSSPAG00000006325	urb1	99	69.090	ENSXMAG00000007253	urb1	99	70.222	Xiphophorus_maculatus