EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSPAG00000006917 (Gene tree)
Gene ID: 103365581
Gene Symbol: trnau1apb
Alias: secp43|trnau1ap|trnau1apl|trspap1|wu:fa56b07|wu:fc12c07|wu:fc69f09|zgc:113964|zgc:77884
Full Name: tRNA selenocysteine 1-associated protein 1-like
Gene Type: protein_coding
Species: Stegastes_partitus
Status: putative
Strand: Plus strand
Length: 8961 bases
Position: chrKK580925.1:302725-311685
Accession: 103365581
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPAP00000009109	RRM_1	PF00076.22	1.4e-30	1	2
ENSSPAP00000009109	RRM_1	PF00076.22	1.4e-30	2	2
ENSSPAP00000009082	RRM_1	PF00076.22	1.9e-30	1	2
ENSSPAP00000009082	RRM_1	PF00076.22	1.9e-30	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPAT00000009245	-	2274	XM_008293052	ENSSPAP00000009082	340 (aa)	XP_008291274	UPI0004950392
ENSSPAT00000009273	-	924	-	ENSSPAP00000009109	307 (aa)	-	-

Gene Model

Click here to download ENSSPAG00000006917's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPAG00000006917's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSPAG00000006917	trnau1apb	56	31.034	ENSSPAG00000004511	-	72	31.034
ENSSPAG00000006917	trnau1apb	56	30.460	ENSSPAG00000000095	tial1	68	30.460
ENSSPAG00000006917	trnau1apb	95	46.780	ENSSPAG00000005029	trnau1apa	94	45.574

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPAG00000006917	trnau1apb	100	84.227	ENSAPOG00000010086	trnau1apb	100	82.166	Acanthochromis_polyacanthus
ENSSPAG00000006917	trnau1apb	100	88.272	ENSACIG00000001863	trnau1apb	100	87.963	Amphilophus_citrinellus
ENSSPAG00000006917	trnau1apb	100	97.353	ENSAOCG00000011891	trnau1apb	100	97.353	Amphiprion_ocellaris
ENSSPAG00000006917	trnau1apb	100	97.353	ENSAPEG00000008029	trnau1apb	100	97.353	Amphiprion_percula
ENSSPAG00000006917	trnau1apb	100	93.529	ENSATEG00000002196	trnau1apb	100	93.529	Anabas_testudineus
ENSSPAG00000006917	trnau1apb	100	87.613	ENSACLG00000003016	trnau1apb	100	87.273	Astatotilapia_calliptera
ENSSPAG00000006917	trnau1apb	99	67.974	ENSAMXG00000001805	trnau1apb	99	66.864	Astyanax_mexicanus
ENSSPAG00000006917	trnau1apb	99	86.471	ENSCSEG00000018215	trnau1apb	99	86.471	Cynoglossus_semilaevis
ENSSPAG00000006917	trnau1apb	95	81.818	ENSCVAG00000017866	trnau1apb	100	82.727	Cyprinodon_variegatus
ENSSPAG00000006917	trnau1apb	100	64.327	ENSDARG00000056475	trnau1apb	98	66.272	Danio_rerio
ENSSPAG00000006917	trnau1apb	100	63.743	ENSELUG00000016683	trnau1apb	99	65.116	Esox_lucius
ENSSPAG00000006917	trnau1apb	100	85.057	ENSFHEG00000001267	trnau1apb	100	85.758	Fundulus_heteroclitus
ENSSPAG00000006917	trnau1apb	100	74.405	ENSGMOG00000001160	trnau1apb	100	75.953	Gadus_morhua
ENSSPAG00000006917	trnau1apb	58	94.915	ENSGAFG00000006770	trnau1apb	100	75.439	Gambusia_affinis
ENSSPAG00000006917	trnau1apb	100	82.353	ENSGACG00000014944	trnau1apb	100	82.941	Gasterosteus_aculeatus
ENSSPAG00000006917	trnau1apb	71	39.592	ENSGAGG00000022384	-	78	40.408	Gopherus_agassizii
ENSSPAG00000006917	trnau1apb	100	94.118	ENSHBUG00000018944	trnau1apb	99	94.118	Haplochromis_burtoni
ENSSPAG00000006917	trnau1apb	75	81.818	ENSHCOG00000011350	trnau1apb	77	82.231	Hippocampus_comes
ENSSPAG00000006917	trnau1apb	99	64.516	ENSIPUG00000008843	tsp1l	99	67.456	Ictalurus_punctatus
ENSSPAG00000006917	trnau1apb	71	92.694	ENSKMAG00000010082	trnau1apb	99	89.213	Kryptolebias_marmoratus
ENSSPAG00000006917	trnau1apb	100	90.000	ENSLBEG00000020480	trnau1apb	100	89.706	Labrus_bergylta
ENSSPAG00000006917	trnau1apb	100	53.333	ENSLOCG00000013175	trnau1apb	99	54.519	Lepisosteus_oculatus
ENSSPAG00000006917	trnau1apb	100	92.353	ENSMAMG00000012192	trnau1apb	100	93.824	Mastacembelus_armatus
ENSSPAG00000006917	trnau1apb	100	94.118	ENSMZEG00005014852	trnau1apb	99	94.118	Maylandia_zebra
ENSSPAG00000006917	trnau1apb	71	38.115	ENSMGAG00000003234	-	99	40.000	Meleagris_gallopavo
ENSSPAG00000006917	trnau1apb	97	78.841	ENSMMOG00000021521	trnau1apb	100	78.841	Mola_mola
ENSSPAG00000006917	trnau1apb	100	80.757	ENSMALG00000003772	trnau1apb	100	80.126	Monopterus_albus
ENSSPAG00000006917	trnau1apb	97	87.539	ENSNBRG00000000751	trnau1apb	99	87.188	Neolamprologus_brichardi
ENSSPAG00000006917	trnau1apb	99	85.948	ENSONIG00000016639	trnau1apb	100	83.713	Oreochromis_niloticus
ENSSPAG00000006917	trnau1apb	100	76.744	ENSORLG00000013265	trnau1apb	99	86.628	Oryzias_latipes
ENSSPAG00000006917	trnau1apb	100	87.427	ENSORLG00020004464	trnau1apb	100	86.810	Oryzias_latipes_hni
ENSSPAG00000006917	trnau1apb	100	87.427	ENSORLG00015021098	trnau1apb	99	87.427	Oryzias_latipes_hsok
ENSSPAG00000006917	trnau1apb	100	79.651	ENSOMEG00000016531	trnau1apb	99	88.663	Oryzias_melastigma
ENSSPAG00000006917	trnau1apb	100	58.480	ENSPKIG00000007995	trnau1apb	99	62.029	Paramormyrops_kingsleyae
ENSSPAG00000006917	trnau1apb	71	41.224	ENSPSIG00000004189	-	78	41.365	Pelodiscus_sinensis
ENSSPAG00000006917	trnau1apb	99	68.536	ENSPMGG00000018509	trnau1apb	99	70.093	Periophthalmus_magnuspinnatus
ENSSPAG00000006917	trnau1apb	100	83.908	ENSPFOG00000003938	trnau1apb	99	84.971	Poecilia_formosa
ENSSPAG00000006917	trnau1apb	100	83.908	ENSPLAG00000015480	trnau1apb	99	84.971	Poecilia_latipinna
ENSSPAG00000006917	trnau1apb	100	83.908	ENSPMEG00000012743	trnau1apb	99	84.971	Poecilia_mexicana
ENSSPAG00000006917	trnau1apb	100	82.471	ENSPREG00000015035	trnau1apb	99	83.526	Poecilia_reticulata
ENSSPAG00000006917	trnau1apb	100	84.894	ENSPNYG00000012127	trnau1apb	100	84.545	Pundamilia_nyererei
ENSSPAG00000006917	trnau1apb	99	66.862	ENSPNAG00000019138	trnau1apb	98	68.639	Pygocentrus_nattereri
ENSSPAG00000006917	trnau1apb	99	61.329	ENSSFOG00015014158	trnau1apb	99	64.348	Scleropages_formosus
ENSSPAG00000006917	trnau1apb	99	89.381	ENSSMAG00000001745	trnau1apb	99	89.381	Scophthalmus_maximus
ENSSPAG00000006917	trnau1apb	99	94.690	ENSSDUG00000011109	trnau1apb	99	94.690	Seriola_dumerili
ENSSPAG00000006917	trnau1apb	99	94.395	ENSSLDG00000012947	trnau1apb	99	94.395	Seriola_lalandi_dorsalis
ENSSPAG00000006917	trnau1apb	71	35.271	ENSSPUG00000016701	-	82	36.546	Sphenodon_punctatus
ENSSPAG00000006917	trnau1apb	100	80.347	ENSTRUG00000008608	trnau1apb	99	80.115	Takifugu_rubripes
ENSSPAG00000006917	trnau1apb	99	74.277	ENSTNIG00000000916	trnau1apb	100	75.000	Tetraodon_nigroviridis
ENSSPAG00000006917	trnau1apb	94	74.772	ENSXCOG00000007974	trnau1apb	94	81.379	Xiphophorus_couchianus
ENSSPAG00000006917	trnau1apb	100	84.195	ENSXMAG00000029918	trnau1apb	99	85.260	Xiphophorus_maculatus