EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSPAG00000007024 (Gene tree)
Gene ID: 103364467
Gene Symbol: chd1
Alias: fc26h11|fk85d05|si:dkey-106m21.4|wu:fc26h11|wu:fk85d05|zgc:173506
Full Name: chromodomain helicase DNA binding protein 1
Gene Type: protein_coding
Species: Stegastes_partitus
Status: putative
Strand: Minus strand
Length: 27116 bases
Position: chrKK580822.1:31219-58334
Accession: 103364467
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPAP00000009341	ResIII	PF04851.15	1.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPAT00000009436	-	7330	XM_008291597	ENSSPAP00000009271	1814 (aa)	XP_008289819	UPI0004953538
ENSSPAT00000009506	-	4248	-	ENSSPAP00000009341	1415 (aa)	-	-

Gene Model

Click here to download ENSSPAG00000007024's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPAG00000007024's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSPAG00000007024	chd1	84	62.599	ENSSPAG00000016452	chd2	74	61.715
ENSSPAG00000007024	chd1	55	38.462	ENSSPAG00000018749	-	59	42.942

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPAG00000007024	chd1	95	78.171	ENSG00000153922	CHD1	79	78.835	Homo_sapiens
ENSSPAG00000007024	chd1	81	95.678	ENSAPOG00000005764	chd1	98	95.678	Acanthochromis_polyacanthus
ENSSPAG00000007024	chd1	86	95.993	ENSAOCG00000023105	chd1	77	95.993	Amphiprion_ocellaris
ENSSPAG00000007024	chd1	91	93.740	ENSAPEG00000013544	chd1	82	93.740	Amphiprion_percula
ENSSPAG00000007024	chd1	95	91.549	ENSATEG00000010676	chd1	82	90.288	Anabas_testudineus
ENSSPAG00000007024	chd1	86	88.852	ENSAMXG00000010843	chd1	93	88.687	Astyanax_mexicanus
ENSSPAG00000007024	chd1	95	78.571	ENSCATG00000032035	CHD1	80	79.381	Cercocebus_atys
ENSSPAG00000007024	chd1	95	78.571	ENSCSAG00000015339	CHD1	79	79.381	Chlorocebus_sabaeus
ENSSPAG00000007024	chd1	95	76.271	ENSCANG00000036916	CHD1	79	76.012	Colobus_angolensis_palliatus
ENSSPAG00000007024	chd1	95	77.565	ENSCGRG00001023943	Chd1	79	77.712	Cricetulus_griseus_chok1gshd
ENSSPAG00000007024	chd1	95	77.565	ENSCGRG00000008652	Chd1	79	77.712	Cricetulus_griseus_crigri
ENSSPAG00000007024	chd1	86	92.144	ENSCSEG00000009553	chd1	77	92.144	Cynoglossus_semilaevis
ENSSPAG00000007024	chd1	95	78.777	ENSEASG00005016110	CHD1	96	78.777	Equus_asinus_asinus
ENSSPAG00000007024	chd1	86	88.744	ENSELUG00000017677	chd1	75	89.043	Esox_lucius
ENSSPAG00000007024	chd1	92	86.927	ENSFHEG00000021164	chd1	90	91.248	Fundulus_heteroclitus
ENSSPAG00000007024	chd1	95	85.131	ENSGMOG00000001537	chd1	75	84.846	Gadus_morhua
ENSSPAG00000007024	chd1	89	79.764	ENSGALG00000031327	-	76	80.624	Gallus_gallus
ENSSPAG00000007024	chd1	93	93.702	ENSGAFG00000019880	chd1	80	94.540	Gambusia_affinis
ENSSPAG00000007024	chd1	95	74.319	ENSGGOG00000011463	CHD1	79	74.982	Gorilla_gorilla
ENSSPAG00000007024	chd1	86	93.791	ENSHCOG00000014222	chd1	76	93.791	Hippocampus_comes
ENSSPAG00000007024	chd1	84	91.122	ENSIPUG00000001369	chd1	77	90.106	Ictalurus_punctatus
ENSSPAG00000007024	chd1	71	77.375	ENSLAFG00000023183	CHD1	94	77.067	Loxodonta_africana
ENSSPAG00000007024	chd1	95	78.571	ENSMFAG00000031226	CHD1	79	79.381	Macaca_fascicularis
ENSSPAG00000007024	chd1	95	78.661	ENSMMUG00000014090	CHD1	95	79.412	Macaca_mulatta
ENSSPAG00000007024	chd1	95	79.176	ENSMNEG00000045073	CHD1	79	79.617	Macaca_nemestrina
ENSSPAG00000007024	chd1	88	76.164	ENSMLEG00000041096	CHD1	79	73.801	Mandrillus_leucophaeus
ENSSPAG00000007024	chd1	87	94.935	ENSMZEG00005010957	chd1	92	94.935	Maylandia_zebra
ENSSPAG00000007024	chd1	92	78.795	ENSMOCG00000019121	Chd1	77	78.818	Microtus_ochrogaster
ENSSPAG00000007024	chd1	53	82.563	ENSMODG00000019266	-	96	83.902	Monodelphis_domestica
ENSSPAG00000007024	chd1	95	93.162	ENSMALG00000013317	chd1	95	92.873	Monopterus_albus
ENSSPAG00000007024	chd1	95	78.424	MGP_CAROLIEiJ_G0021099	Chd1	93	78.325	Mus_caroli
ENSSPAG00000007024	chd1	95	77.835	ENSMUSG00000023852	Chd1	93	78.325	Mus_musculus
ENSSPAG00000007024	chd1	95	77.565	MGP_PahariEiJ_G0023414	Chd1	94	78.248	Mus_pahari
ENSSPAG00000007024	chd1	84	95.359	ENSNBRG00000006860	chd1	74	95.819	Neolamprologus_brichardi
ENSSPAG00000007024	chd1	95	78.171	ENSNLEG00000014493	CHD1	79	78.835	Nomascus_leucogenys
ENSSPAG00000007024	chd1	95	78.289	ENSOANG00000004891	CHD1	75	84.666	Ornithorhynchus_anatinus
ENSSPAG00000007024	chd1	71	87.463	ENSORLG00015016725	chd1	95	87.364	Oryzias_latipes_hsok
ENSSPAG00000007024	chd1	95	77.036	ENSPPAG00000043367	CHD1	80	77.623	Pan_paniscus
ENSSPAG00000007024	chd1	95	78.171	ENSPTRG00000017103	CHD1	79	78.835	Pan_troglodytes
ENSSPAG00000007024	chd1	95	78.571	ENSPANG00000006387	CHD1	79	79.381	Papio_anubis
ENSSPAG00000007024	chd1	87	81.204	ENSPKIG00000024719	chd1	73	81.286	Paramormyrops_kingsleyae
ENSSPAG00000007024	chd1	90	91.667	ENSPMGG00000005785	chd1	93	91.720	Periophthalmus_magnuspinnatus
ENSSPAG00000007024	chd1	94	77.893	ENSPEMG00000015939	Chd1	79	78.842	Peromyscus_maniculatus_bairdii
ENSSPAG00000007024	chd1	59	88.507	ENSPLAG00000006473	-	85	86.580	Poecilia_latipinna
ENSSPAG00000007024	chd1	95	89.536	ENSPREG00000004209	chd1	81	88.339	Poecilia_reticulata
ENSSPAG00000007024	chd1	95	78.088	ENSRNOG00000014434	Chd1	95	78.235	Rattus_norvegicus
ENSSPAG00000007024	chd1	93	78.824	ENSRBIG00000044325	CHD1	78	80.598	Rhinopithecus_bieti
ENSSPAG00000007024	chd1	95	79.133	ENSRROG00000001726	CHD1	80	80.059	Rhinopithecus_roxellana
ENSSPAG00000007024	chd1	88	85.076	ENSSFOG00015007161	chd1	90	87.052	Scleropages_formosus
ENSSPAG00000007024	chd1	95	95.203	ENSSDUG00000018314	chd1	95	94.838	Seriola_dumerili
ENSSPAG00000007024	chd1	63	95.941	ENSSLDG00000017244	chd1	88	96.591	Seriola_lalandi_dorsalis
ENSSPAG00000007024	chd1	95	78.351	ENSSSCG00000014177	CHD1	91	78.761	Sus_scrofa
ENSSPAG00000007024	chd1	95	86.603	ENSTRUG00000010282	chd1	79	87.870	Takifugu_rubripes
ENSSPAG00000007024	chd1	86	88.735	ENSTNIG00000007101	chd1	95	88.581	Tetraodon_nigroviridis
ENSSPAG00000007024	chd1	95	83.518	ENSXCOG00000017184	chd1	74	87.561	Xiphophorus_couchianus
ENSSPAG00000007024	chd1	93	89.601	ENSXMAG00000014538	chd1	96	88.226	Xiphophorus_maculatus