EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSPAG00000007938 (Gene tree)
Gene ID: 103357652
Gene Symbol: upf3a
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Stegastes_partitus
Status: putative
Strand: Plus strand
Length: 6293 bases
Position: chrKK580078.1:1357961-1364253
Accession: 103357652
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPAP00000010662	Smg4_UPF3	PF03467.15	1.1e-54	1	1
ENSSPAP00000010631	Smg4_UPF3	PF03467.15	1.4e-54	1	1
ENSSPAP00000010616	Smg4_UPF3	PF03467.15	1.5e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPAT00000010843	-	657	-	ENSSPAP00000010662	218 (aa)	-	-
ENSSPAT00000010812	-	1380	XM_008282295	ENSSPAP00000010631	459 (aa)	XP_008280517	-
ENSSPAT00000010797	-	1434	-	ENSSPAP00000010616	477 (aa)	-	-

Gene Model

Click here to download ENSSPAG00000007938's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPAG00000007938's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPAG00000007938	upf3a	74	80.745	ENSG00000169062	UPF3A	91	51.039	Homo_sapiens
ENSSPAG00000007938	upf3a	72	70.701	ENSG00000125351	UPF3B	76	70.732	Homo_sapiens
ENSSPAG00000007938	upf3a	100	96.976	ENSAPOG00000013484	upf3a	100	96.976	Acanthochromis_polyacanthus
ENSSPAG00000007938	upf3a	72	67.516	ENSACIG00000013582	upf3b	93	45.244	Amphilophus_citrinellus
ENSSPAG00000007938	upf3a	98	92.887	ENSACIG00000020468	upf3a	99	93.277	Amphilophus_citrinellus
ENSSPAG00000007938	upf3a	72	70.064	ENSAOCG00000000706	upf3b	93	48.718	Amphiprion_ocellaris
ENSSPAG00000007938	upf3a	100	97.624	ENSAOCG00000020784	upf3a	100	97.624	Amphiprion_ocellaris
ENSSPAG00000007938	upf3a	100	97.624	ENSAPEG00000003519	upf3a	100	97.624	Amphiprion_percula
ENSSPAG00000007938	upf3a	100	90.644	ENSATEG00000005843	upf3a	100	94.168	Anabas_testudineus
ENSSPAG00000007938	upf3a	73	81.875	ENSACAG00000001540	UPF3A	94	63.038	Anolis_carolinensis
ENSSPAG00000007938	upf3a	72	65.385	ENSANAG00000025598	-	70	66.667	Aotus_nancymaae
ENSSPAG00000007938	upf3a	62	66.176	ENSANAG00000033169	-	63	59.375	Aotus_nancymaae
ENSSPAG00000007938	upf3a	72	70.701	ENSANAG00000021894	-	77	70.303	Aotus_nancymaae
ENSSPAG00000007938	upf3a	100	92.100	ENSACLG00000026274	upf3a	100	93.139	Astatotilapia_calliptera
ENSSPAG00000007938	upf3a	99	79.167	ENSAMXG00000002608	upf3a	100	82.251	Astyanax_mexicanus
ENSSPAG00000007938	upf3a	70	67.532	ENSAMXG00000000199	upf3b	56	67.273	Astyanax_mexicanus
ENSSPAG00000007938	upf3a	65	80.282	ENSBTAG00000047365	-	71	77.564	Bos_taurus
ENSSPAG00000007938	upf3a	72	70.701	ENSBTAG00000035615	UPF3B	53	70.732	Bos_taurus
ENSSPAG00000007938	upf3a	72	70.064	ENSCJAG00000004975	UPF3B	77	69.697	Callithrix_jacchus
ENSSPAG00000007938	upf3a	66	70.833	ENSCAFG00020004074	UPF3B	64	72.603	Canis_lupus_dingo
ENSSPAG00000007938	upf3a	72	70.701	ENSCHIG00000018011	-	53	70.732	Capra_hircus
ENSSPAG00000007938	upf3a	72	70.064	ENSTSYG00000014690	UPF3B	76	65.294	Carlito_syrichta
ENSSPAG00000007938	upf3a	69	58.667	ENSCCAG00000029813	-	52	59.494	Cebus_capucinus
ENSSPAG00000007938	upf3a	74	81.366	ENSCATG00000029733	UPF3A	95	51.204	Cercocebus_atys
ENSSPAG00000007938	upf3a	72	70.701	ENSCATG00000017506	UPF3B	77	70.303	Cercocebus_atys
ENSSPAG00000007938	upf3a	50	55.963	ENSCLAG00000000093	-	85	55.285	Chinchilla_lanigera
ENSSPAG00000007938	upf3a	74	46.914	ENSCING00000008396	-	91	52.381	Ciona_intestinalis
ENSSPAG00000007938	upf3a	72	70.701	ENSCANG00000029220	UPF3B	52	70.732	Colobus_angolensis_palliatus
ENSSPAG00000007938	upf3a	88	59.420	ENSCGRG00001013643	-	61	56.195	Cricetulus_griseus_chok1gshd
ENSSPAG00000007938	upf3a	99	87.500	ENSCSEG00000005106	upf3a	99	89.610	Cynoglossus_semilaevis
ENSSPAG00000007938	upf3a	100	88.362	ENSCVAG00000022333	upf3a	100	88.362	Cyprinodon_variegatus
ENSSPAG00000007938	upf3a	99	80.346	ENSDARG00000069297	upf3a	100	80.346	Danio_rerio
ENSSPAG00000007938	upf3a	74	82.609	ENSDNOG00000034391	UPF3A	90	54.135	Dasypus_novemcinctus
ENSSPAG00000007938	upf3a	92	51.078	ENSETEG00000010110	UPF3A	96	46.121	Echinops_telfairi
ENSSPAG00000007938	upf3a	72	70.253	ENSEASG00005012919	UPF3B	62	69.565	Equus_asinus_asinus
ENSSPAG00000007938	upf3a	72	70.253	ENSECAG00000016947	UPF3B	62	62.857	Equus_caballus
ENSSPAG00000007938	upf3a	98	82.251	ENSELUG00000011050	upf3a	99	82.251	Esox_lucius
ENSSPAG00000007938	upf3a	72	70.701	ENSFHEG00000017895	upf3b	89	49.878	Fundulus_heteroclitus
ENSSPAG00000007938	upf3a	69	80.795	ENSGALG00000016815	-	91	70.103	Gallus_gallus
ENSSPAG00000007938	upf3a	72	73.077	ENSGALG00000008618	UPF3B	86	49.757	Gallus_gallus
ENSSPAG00000007938	upf3a	72	70.701	ENSGAFG00000000829	upf3b	91	48.810	Gambusia_affinis
ENSSPAG00000007938	upf3a	100	90.517	ENSGAFG00000021170	upf3a	100	84.267	Gambusia_affinis
ENSSPAG00000007938	upf3a	74	96.273	ENSGACG00000001972	upf3a	50	96.273	Gasterosteus_aculeatus
ENSSPAG00000007938	upf3a	72	70.701	ENSGACG00000017435	upf3b	60	71.341	Gasterosteus_aculeatus
ENSSPAG00000007938	upf3a	72	73.718	ENSGAGG00000001219	UPF3B	86	50.611	Gopherus_agassizii
ENSSPAG00000007938	upf3a	65	84.507	ENSGAGG00000001952	UPF3A	81	84.507	Gopherus_agassizii
ENSSPAG00000007938	upf3a	72	70.701	ENSGGOG00000023995	UPF3B	58	71.681	Gorilla_gorilla
ENSSPAG00000007938	upf3a	82	58.989	ENSGGOG00000041219	-	85	46.719	Gorilla_gorilla
ENSSPAG00000007938	upf3a	74	63.354	ENSGGOG00000043074	-	80	46.475	Gorilla_gorilla
ENSSPAG00000007938	upf3a	100	95.464	ENSHBUG00000011325	upf3a	100	95.464	Haplochromis_burtoni
ENSSPAG00000007938	upf3a	74	75.155	ENSHGLG00000001544	UPF3A	50	65.385	Heterocephalus_glaber_female
ENSSPAG00000007938	upf3a	74	75.155	ENSHGLG00100013244	UPF3A	50	65.385	Heterocephalus_glaber_male
ENSSPAG00000007938	upf3a	94	83.257	ENSHCOG00000013985	upf3a	94	83.257	Hippocampus_comes
ENSSPAG00000007938	upf3a	99	80.130	ENSIPUG00000023450	upf3a	100	80.130	Ictalurus_punctatus
ENSSPAG00000007938	upf3a	66	76.923	ENSSTOG00000030282	-	88	62.381	Ictidomys_tridecemlineatus
ENSSPAG00000007938	upf3a	66	77.622	ENSJJAG00000018099	-	77	70.909	Jaculus_jaculus
ENSSPAG00000007938	upf3a	100	94.397	ENSKMAG00000004381	upf3a	100	94.397	Kryptolebias_marmoratus
ENSSPAG00000007938	upf3a	98	88.914	ENSLBEG00000021570	upf3a	100	87.196	Labrus_bergylta
ENSSPAG00000007938	upf3a	59	43.917	ENSLACG00000006645	UPF3A	65	86.792	Latimeria_chalumnae
ENSSPAG00000007938	upf3a	97	75.381	ENSLOCG00000002665	upf3a	98	75.381	Lepisosteus_oculatus
ENSSPAG00000007938	upf3a	72	70.701	ENSMFAG00000045414	UPF3B	77	70.303	Macaca_fascicularis
ENSSPAG00000007938	upf3a	72	59.036	ENSMFAG00000045275	-	93	52.709	Macaca_fascicularis
ENSSPAG00000007938	upf3a	83	75.000	ENSMMUG00000007449	UPF3A	95	51.002	Macaca_mulatta
ENSSPAG00000007938	upf3a	72	70.701	ENSMMUG00000020222	UPF3B	77	70.303	Macaca_mulatta
ENSSPAG00000007938	upf3a	76	55.429	ENSMMUG00000046682	-	87	54.802	Macaca_mulatta
ENSSPAG00000007938	upf3a	72	70.701	ENSMNEG00000039794	UPF3B	77	70.303	Macaca_nemestrina
ENSSPAG00000007938	upf3a	74	81.988	ENSMNEG00000036402	UPF3A	83	52.812	Macaca_nemestrina
ENSSPAG00000007938	upf3a	72	58.434	ENSMNEG00000040898	-	90	56.989	Macaca_nemestrina
ENSSPAG00000007938	upf3a	74	81.988	ENSMLEG00000014726	UPF3A	94	53.000	Mandrillus_leucophaeus
ENSSPAG00000007938	upf3a	72	70.701	ENSMLEG00000010999	UPF3B	77	70.303	Mandrillus_leucophaeus
ENSSPAG00000007938	upf3a	100	91.892	ENSMAMG00000018364	upf3a	100	91.892	Mastacembelus_armatus
ENSSPAG00000007938	upf3a	100	92.100	ENSMZEG00005021571	upf3a	100	93.139	Maylandia_zebra
ENSSPAG00000007938	upf3a	66	86.014	ENSMGAG00000014837	UPF3A	99	63.325	Meleagris_gallopavo
ENSSPAG00000007938	upf3a	72	70.701	ENSMICG00000001743	UPF3B	51	70.732	Microcebus_murinus
ENSSPAG00000007938	upf3a	74	78.261	ENSMOCG00000000550	Upf3a	55	68.878	Microtus_ochrogaster
ENSSPAG00000007938	upf3a	100	89.397	ENSMMOG00000019751	upf3a	100	89.397	Mola_mola
ENSSPAG00000007938	upf3a	74	83.851	ENSMODG00000003159	UPF3A	99	64.252	Monodelphis_domestica
ENSSPAG00000007938	upf3a	51	93.694	ENSMALG00000002454	-	61	94.545	Monopterus_albus
ENSSPAG00000007938	upf3a	72	70.701	ENSMALG00000008042	upf3b	92	49.061	Monopterus_albus
ENSSPAG00000007938	upf3a	74	79.503	MGP_PahariEiJ_G0021311	Upf3a	87	50.674	Mus_pahari
ENSSPAG00000007938	upf3a	74	80.000	ENSMLUG00000015905	UPF3A	92	54.731	Myotis_lucifugus
ENSSPAG00000007938	upf3a	69	67.333	ENSNBRG00000011560	upf3b	76	75.000	Neolamprologus_brichardi
ENSSPAG00000007938	upf3a	100	95.680	ENSNBRG00000000828	upf3a	100	95.680	Neolamprologus_brichardi
ENSSPAG00000007938	upf3a	74	80.124	ENSNLEG00000007563	UPF3A	91	49.558	Nomascus_leucogenys
ENSSPAG00000007938	upf3a	72	70.701	ENSNLEG00000014897	UPF3B	60	71.681	Nomascus_leucogenys
ENSSPAG00000007938	upf3a	76	56.024	ENSNLEG00000027516	-	78	59.146	Nomascus_leucogenys
ENSSPAG00000007938	upf3a	61	59.398	ENSODEG00000000596	-	67	59.398	Octodon_degus
ENSSPAG00000007938	upf3a	72	55.625	ENSODEG00000007164	-	70	56.287	Octodon_degus
ENSSPAG00000007938	upf3a	72	59.873	ENSODEG00000006064	-	90	56.425	Octodon_degus
ENSSPAG00000007938	upf3a	69	72.667	ENSODEG00000009176	-	59	74.497	Octodon_degus
ENSSPAG00000007938	upf3a	100	95.279	ENSONIG00000006817	upf3a	100	95.279	Oreochromis_niloticus
ENSSPAG00000007938	upf3a	73	63.125	ENSOANG00000006985	-	95	55.228	Ornithorhynchus_anatinus
ENSSPAG00000007938	upf3a	100	86.510	ENSORLG00000010911	upf3a	100	86.510	Oryzias_latipes
ENSSPAG00000007938	upf3a	72	67.516	ENSORLG00020003758	upf3b	56	62.573	Oryzias_latipes_hni
ENSSPAG00000007938	upf3a	100	85.745	ENSORLG00020014317	upf3a	100	85.745	Oryzias_latipes_hni
ENSSPAG00000007938	upf3a	100	86.609	ENSORLG00015017339	upf3a	58	81.641	Oryzias_latipes_hsok
ENSSPAG00000007938	upf3a	100	88.121	ENSOMEG00000014425	upf3a	100	88.121	Oryzias_melastigma
ENSSPAG00000007938	upf3a	74	79.012	ENSOARG00000009004	UPF3A	84	51.990	Ovis_aries
ENSSPAG00000007938	upf3a	72	70.701	ENSPPAG00000040390	UPF3B	58	71.681	Pan_paniscus
ENSSPAG00000007938	upf3a	72	70.701	ENSPTIG00000015264	UPF3B	52	70.732	Panthera_tigris_altaica
ENSSPAG00000007938	upf3a	72	70.701	ENSPTRG00000022228	UPF3B	58	71.681	Pan_troglodytes
ENSSPAG00000007938	upf3a	82	58.989	ENSPTRG00000041187	-	85	45.692	Pan_troglodytes
ENSSPAG00000007938	upf3a	74	57.764	ENSPTRG00000051640	-	85	43.307	Pan_troglodytes
ENSSPAG00000007938	upf3a	72	70.701	ENSPANG00000000900	UPF3B	77	70.303	Papio_anubis
ENSSPAG00000007938	upf3a	74	81.988	ENSPANG00000004346	UPF3A	95	51.535	Papio_anubis
ENSSPAG00000007938	upf3a	72	58.434	ENSPANG00000029350	-	90	56.684	Papio_anubis
ENSSPAG00000007938	upf3a	73	72.327	ENSPKIG00000019226	upf3b	88	67.361	Paramormyrops_kingsleyae
ENSSPAG00000007938	upf3a	97	71.667	ENSPKIG00000004422	upf3a	100	69.684	Paramormyrops_kingsleyae
ENSSPAG00000007938	upf3a	74	84.472	ENSPSIG00000007468	UPF3A	96	66.667	Pelodiscus_sinensis
ENSSPAG00000007938	upf3a	72	68.790	ENSPMGG00000016067	upf3b	59	69.939	Periophthalmus_magnuspinnatus
ENSSPAG00000007938	upf3a	100	84.189	ENSPMGG00000012696	upf3a	100	84.189	Periophthalmus_magnuspinnatus
ENSSPAG00000007938	upf3a	73	83.750	ENSPCIG00000019590	-	90	68.932	Phascolarctos_cinereus
ENSSPAG00000007938	upf3a	100	87.734	ENSPFOG00000013222	upf3a	100	91.145	Poecilia_formosa
ENSSPAG00000007938	upf3a	72	71.338	ENSPLAG00000019922	upf3b	91	48.810	Poecilia_latipinna
ENSSPAG00000007938	upf3a	98	83.151	ENSPLAG00000011960	upf3a	100	89.934	Poecilia_latipinna
ENSSPAG00000007938	upf3a	72	71.338	ENSPLAG00000005105	upf3b	91	48.810	Poecilia_latipinna
ENSSPAG00000007938	upf3a	72	71.338	ENSPMEG00000023532	upf3b	91	48.810	Poecilia_mexicana
ENSSPAG00000007938	upf3a	100	87.785	ENSPMEG00000000836	upf3a	100	87.785	Poecilia_mexicana
ENSSPAG00000007938	upf3a	74	80.124	ENSPPYG00000005536	UPF3A	91	51.039	Pongo_abelii
ENSSPAG00000007938	upf3a	72	70.701	ENSPPYG00000020675	-	50	70.732	Pongo_abelii
ENSSPAG00000007938	upf3a	72	70.701	ENSPCOG00000021960	UPF3B	51	70.732	Propithecus_coquereli
ENSSPAG00000007938	upf3a	100	92.100	ENSPNYG00000011289	upf3a	100	93.139	Pundamilia_nyererei
ENSSPAG00000007938	upf3a	99	80.952	ENSPNAG00000019532	upf3a	100	81.182	Pygocentrus_nattereri
ENSSPAG00000007938	upf3a	72	73.418	ENSPNAG00000021528	upf3b	54	73.620	Pygocentrus_nattereri
ENSSPAG00000007938	upf3a	73	81.875	ENSRBIG00000034007	UPF3A	93	52.174	Rhinopithecus_bieti
ENSSPAG00000007938	upf3a	72	70.701	ENSRROG00000041031	UPF3B	77	70.303	Rhinopithecus_roxellana
ENSSPAG00000007938	upf3a	73	81.875	ENSRROG00000012212	UPF3A	85	53.133	Rhinopithecus_roxellana
ENSSPAG00000007938	upf3a	72	70.701	ENSSBOG00000019740	UPF3B	78	71.166	Saimiri_boliviensis_boliviensis
ENSSPAG00000007938	upf3a	82	77.654	ENSSHAG00000009895	UPF3A	94	67.254	Sarcophilus_harrisii
ENSSPAG00000007938	upf3a	100	86.151	ENSSMAG00000003858	upf3a	100	87.373	Scophthalmus_maximus
ENSSPAG00000007938	upf3a	72	73.077	ENSSMAG00000012913	upf3b	88	49.282	Scophthalmus_maximus
ENSSPAG00000007938	upf3a	100	93.555	ENSSDUG00000009680	upf3a	100	93.555	Seriola_dumerili
ENSSPAG00000007938	upf3a	100	96.112	ENSSLDG00000009700	upf3a	100	96.112	Seriola_lalandi_dorsalis
ENSSPAG00000007938	upf3a	74	84.472	ENSTGUG00000009493	UPF3A	99	67.595	Taeniopygia_guttata
ENSSPAG00000007938	upf3a	98	78.901	ENSTRUG00000012730	upf3a	99	84.176	Takifugu_rubripes
ENSSPAG00000007938	upf3a	80	86.034	ENSTNIG00000014973	upf3a	100	76.923	Tetraodon_nigroviridis
ENSSPAG00000007938	upf3a	72	54.140	ENSTBEG00000003229	UPF3B	51	55.215	Tupaia_belangeri
ENSSPAG00000007938	upf3a	66	70.833	ENSUAMG00000024565	UPF3B	65	68.116	Ursus_americanus
ENSSPAG00000007938	upf3a	72	70.253	ENSVVUG00000011594	UPF3B	77	70.303	Vulpes_vulpes
ENSSPAG00000007938	upf3a	72	70.701	ENSXETG00000007440	upf3b	71	71.779	Xenopus_tropicalis
ENSSPAG00000007938	upf3a	75	68.902	ENSXCOG00000016586	upf3b	83	71.687	Xiphophorus_couchianus
ENSSPAG00000007938	upf3a	72	70.253	ENSXMAG00000013680	upf3b	89	47.529	Xiphophorus_maculatus
ENSSPAG00000007938	upf3a	100	91.164	ENSXMAG00000013452	upf3a	100	91.164	Xiphophorus_maculatus