EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSPAG00000009856 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: 5'-3' exoribonuclease 1-like
Gene Type: protein_coding
Species: Stegastes_partitus
Status: putative
Strand: Minus strand
Length: 11641 bases
Position: chrKK580205.1:189575-201215
Accession: 103355155
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPAP00000013172	XRN_N	PF03159.18	7.2e-50	1	1
ENSSPAP00000013155	XRN_N	PF03159.18	8.5e-50	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPAT00000013395	-	1533	XM_008278846	ENSSPAP00000013172	510 (aa)	XP_008277068	-
ENSSPAT00000013378	-	1689	-	ENSSPAP00000013155	562 (aa)	-	-

Gene Model

Click here to download ENSSPAG00000009856's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPAG00000009856's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSPAG00000009856	-	95	39.076	ENSSPAG00000016027	xrn2	57	38.011

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPAG00000009856	-	96	76.065	ENSG00000114127	XRN1	100	82.530	Homo_sapiens
ENSSPAG00000009856	-	95	93.840	ENSAPOG00000000622	xrn1	97	91.975	Acanthochromis_polyacanthus
ENSSPAG00000009856	-	95	94.251	ENSAOCG00000014097	xrn1	92	84.265	Amphiprion_ocellaris
ENSSPAG00000009856	-	96	74.291	ENSAMXG00000019370	xrn1	99	72.600	Astyanax_mexicanus
ENSSPAG00000009856	-	96	76.876	ENSCAFG00020009120	XRN1	50	73.494	Canis_lupus_dingo
ENSSPAG00000009856	-	96	59.229	ENSCAPG00000004604	-	51	59.026	Cavia_aperea
ENSSPAG00000009856	-	96	76.673	ENSCCAG00000034800	XRN1	50	76.268	Cebus_capucinus
ENSSPAG00000009856	-	96	76.673	ENSCLAG00000001451	XRN1	50	76.471	Chinchilla_lanigera
ENSSPAG00000009856	-	92	57.447	ENSCING00000001334	-	92	57.447	Ciona_intestinalis
ENSSPAG00000009856	-	96	76.673	ENSCANG00000037495	XRN1	50	76.268	Colobus_angolensis_palliatus
ENSSPAG00000009856	-	96	77.172	ENSCGRG00001019411	Xrn1	50	77.172	Cricetulus_griseus_chok1gshd
ENSSPAG00000009856	-	96	77.172	ENSCGRG00000012464	Xrn1	50	77.172	Cricetulus_griseus_crigri
ENSSPAG00000009856	-	95	85.421	ENSCSEG00000021285	xrn1	97	86.765	Cynoglossus_semilaevis
ENSSPAG00000009856	-	95	80.041	ENSDARG00000091652	xrn1	99	81.856	Danio_rerio
ENSSPAG00000009856	-	96	77.033	ENSEASG00005002687	XRN1	50	76.923	Equus_asinus_asinus
ENSSPAG00000009856	-	96	64.980	ENSFCAG00000027589	XRN1	80	74.194	Felis_catus
ENSSPAG00000009856	-	96	76.673	ENSFDAG00000020494	XRN1	50	76.471	Fukomys_damarensis
ENSSPAG00000009856	-	95	78.261	ENSFHEG00000017356	-	98	77.386	Fundulus_heteroclitus
ENSSPAG00000009856	-	95	87.552	ENSHBUG00000005908	xrn1	97	87.552	Haplochromis_burtoni
ENSSPAG00000009856	-	96	76.876	ENSHGLG00000014476	XRN1	50	76.673	Heterocephalus_glaber_female
ENSSPAG00000009856	-	96	76.876	ENSHGLG00100015130	XRN1	50	76.673	Heterocephalus_glaber_male
ENSSPAG00000009856	-	96	76.268	ENSSTOG00000013552	XRN1	50	76.065	Ictidomys_tridecemlineatus
ENSSPAG00000009856	-	96	76.411	ENSJJAG00000010863	Xrn1	52	76.613	Jaculus_jaculus
ENSSPAG00000009856	-	95	86.653	ENSKMAG00000021356	xrn1	94	87.872	Kryptolebias_marmoratus
ENSSPAG00000009856	-	95	85.832	ENSLBEG00000018656	xrn1	95	85.773	Labrus_bergylta
ENSSPAG00000009856	-	96	76.626	ENSLAFG00000015426	XRN1	82	63.375	Loxodonta_africana
ENSSPAG00000009856	-	72	73.585	ENSMLEG00000041349	-	80	73.585	Mandrillus_leucophaeus
ENSSPAG00000009856	-	96	88.753	ENSMAMG00000013219	xrn1	95	89.072	Mastacembelus_armatus
ENSSPAG00000009856	-	96	76.673	ENSMOCG00000008665	Xrn1	50	76.268	Microtus_ochrogaster
ENSSPAG00000009856	-	91	87.069	ENSMMOG00000020896	-	82	87.069	Mola_mola
ENSSPAG00000009856	-	96	76.970	MGP_CAROLIEiJ_G0032535	Xrn1	88	60.526	Mus_caroli
ENSSPAG00000009856	-	96	76.970	ENSMUSG00000032410	Xrn1	88	60.526	Mus_musculus
ENSSPAG00000009856	-	96	76.829	MGP_PahariEiJ_G0015404	Xrn1	88	60.526	Mus_pahari
ENSSPAG00000009856	-	96	76.970	MGP_SPRETEiJ_G0033678	Xrn1	88	60.526	Mus_spretus
ENSSPAG00000009856	-	96	84.350	ENSPMGG00000002648	xrn1	50	84.553	Periophthalmus_magnuspinnatus
ENSSPAG00000009856	-	96	77.079	ENSPEMG00000020610	Xrn1	50	76.673	Peromyscus_maniculatus_bairdii
ENSSPAG00000009856	-	96	76.829	ENSPCIG00000028735	XRN1	50	76.829	Phascolarctos_cinereus
ENSSPAG00000009856	-	96	76.268	ENSPCOG00000013089	XRN1	50	76.065	Propithecus_coquereli
ENSSPAG00000009856	-	72	73.315	ENSRROG00000033764	-	80	73.315	Rhinopithecus_roxellana
ENSSPAG00000009856	-	95	76.639	ENSSPUG00000010779	-	99	75.351	Sphenodon_punctatus
ENSSPAG00000009856	-	95	84.805	ENSTRUG00000004895	xrn1	97	86.864	Takifugu_rubripes
ENSSPAG00000009856	-	96	72.470	ENSUAMG00000001608	XRN1	50	72.211	Ursus_americanus
ENSSPAG00000009856	-	96	76.923	ENSVVUG00000024461	XRN1	99	78.390	Vulpes_vulpes
ENSSPAG00000009856	-	96	75.456	ENSXETG00000000619	xrn1	76	78.114	Xenopus_tropicalis