EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSPAG00000011615 (Gene tree)
Gene ID: 103360782
Gene Symbol: lsm4
Alias: zgc:73057|zgc:77848
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Stegastes_partitus
Status: putative
Strand: Plus strand
Length: 4210 bases
Position: chrKK580535.1:137868-142077
Accession: 103360782
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPAP00000015410	LSM	PF01423.22	1.1e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPAT00000015661	-	1602	XM_008286679	ENSSPAP00000015410	151 (aa)	XP_008284901	UPI000496452D

Gene Model

Click here to download ENSSPAG00000011615's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPAG00000011615's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSPAG00000011615	lsm4	65	32.673	ENSSPAG00000016904	si:ch73-14h10.2	100	32.673

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPAG00000011615	lsm4	58	98.864	ENSG00000130520	LSM4	99	75.000	Homo_sapiens
ENSSPAG00000011615	lsm4	100	99.338	ENSAPOG00000005643	lsm4	100	99.338	Acanthochromis_polyacanthus
ENSSPAG00000011615	lsm4	58	98.851	ENSAMEG00000011162	LSM4	67	96.939	Ailuropoda_melanoleuca
ENSSPAG00000011615	lsm4	100	98.013	ENSAOCG00000006414	lsm4	100	98.013	Amphiprion_ocellaris
ENSSPAG00000011615	lsm4	100	98.675	ENSAPEG00000006238	lsm4	100	98.675	Amphiprion_percula
ENSSPAG00000011615	lsm4	100	95.395	ENSATEG00000016559	lsm4	100	95.395	Anabas_testudineus
ENSSPAG00000011615	lsm4	58	98.864	ENSANAG00000034659	LSM4	99	73.510	Aotus_nancymaae
ENSSPAG00000011615	lsm4	100	94.040	ENSACLG00000022738	lsm4	100	94.040	Astatotilapia_calliptera
ENSSPAG00000011615	lsm4	100	85.526	ENSAMXG00000016932	lsm4	100	84.868	Astyanax_mexicanus
ENSSPAG00000011615	lsm4	58	98.864	ENSBTAG00000008578	LSM4	99	73.510	Bos_taurus
ENSSPAG00000011615	lsm4	55	75.904	WBGene00003078	lsm-4	83	66.667	Caenorhabditis_elegans
ENSSPAG00000011615	lsm4	58	98.864	ENSCJAG00000014171	LSM4	99	73.510	Callithrix_jacchus
ENSSPAG00000011615	lsm4	58	98.864	ENSCAFG00000014900	LSM4	65	96.970	Canis_familiaris
ENSSPAG00000011615	lsm4	58	98.864	ENSCAFG00020012137	LSM4	99	73.510	Canis_lupus_dingo
ENSSPAG00000011615	lsm4	58	98.851	ENSCHIG00000010928	LSM4	90	73.333	Capra_hircus
ENSSPAG00000011615	lsm4	58	97.727	ENSTSYG00000030906	LSM4	99	72.848	Carlito_syrichta
ENSSPAG00000011615	lsm4	58	97.727	ENSCAPG00000014140	LSM4	71	95.960	Cavia_aperea
ENSSPAG00000011615	lsm4	58	97.727	ENSCPOG00000024117	LSM4	71	95.960	Cavia_porcellus
ENSSPAG00000011615	lsm4	58	98.864	ENSCCAG00000036308	LSM4	99	73.510	Cebus_capucinus
ENSSPAG00000011615	lsm4	58	98.864	ENSCATG00000029311	LSM4	99	73.510	Cercocebus_atys
ENSSPAG00000011615	lsm4	58	98.864	ENSCLAG00000010828	LSM4	99	73.649	Chinchilla_lanigera
ENSSPAG00000011615	lsm4	58	98.864	ENSCSAG00000005370	LSM4	99	73.510	Chlorocebus_sabaeus
ENSSPAG00000011615	lsm4	58	100.000	ENSCPBG00000012925	LSM4	72	97.980	Chrysemys_picta_bellii
ENSSPAG00000011615	lsm4	57	93.023	ENSCING00000007519	-	72	92.391	Ciona_intestinalis
ENSSPAG00000011615	lsm4	57	93.023	ENSCSAVG00000008596	-	78	87.629	Ciona_savignyi
ENSSPAG00000011615	lsm4	58	98.864	ENSCANG00000043686	LSM4	99	73.510	Colobus_angolensis_palliatus
ENSSPAG00000011615	lsm4	58	95.455	ENSCGRG00001014436	Lsm4	71	93.939	Cricetulus_griseus_chok1gshd
ENSSPAG00000011615	lsm4	58	95.402	ENSCGRG00000009398	Lsm4	71	93.878	Cricetulus_griseus_crigri
ENSSPAG00000011615	lsm4	100	82.781	ENSCSEG00000016127	lsm4	100	90.066	Cynoglossus_semilaevis
ENSSPAG00000011615	lsm4	90	88.235	ENSCVAG00000021828	lsm4	98	88.235	Cyprinodon_variegatus
ENSSPAG00000011615	lsm4	100	89.404	ENSCVAG00000010601	lsm4	100	89.404	Cyprinodon_variegatus
ENSSPAG00000011615	lsm4	95	82.000	ENSDARG00000023852	lsm4	98	81.818	Danio_rerio
ENSSPAG00000011615	lsm4	58	97.727	ENSDORG00000024225	Lsm4	71	95.960	Dipodomys_ordii
ENSSPAG00000011615	lsm4	66	81.000	FBgn0032240	CG17768	63	81.443	Drosophila_melanogaster
ENSSPAG00000011615	lsm4	50	93.333	ENSEBUG00000003639	-	64	77.083	Eptatretus_burgeri
ENSSPAG00000011615	lsm4	86	91.538	ENSELUG00000012821	lsm4	93	93.496	Esox_lucius
ENSSPAG00000011615	lsm4	58	98.864	ENSFCAG00000040580	LSM4	99	73.510	Felis_catus
ENSSPAG00000011615	lsm4	58	100.000	ENSFALG00000009478	LSM4	71	97.959	Ficedula_albicollis
ENSSPAG00000011615	lsm4	58	98.851	ENSFDAG00000010124	LSM4	71	96.939	Fukomys_damarensis
ENSSPAG00000011615	lsm4	99	80.000	ENSGMOG00000007729	lsm4	99	77.483	Gadus_morhua
ENSSPAG00000011615	lsm4	58	100.000	ENSGALG00000003385	LSM4	72	97.980	Gallus_gallus
ENSSPAG00000011615	lsm4	100	88.079	ENSGAFG00000004903	lsm4	97	85.294	Gambusia_affinis
ENSSPAG00000011615	lsm4	100	86.928	ENSGACG00000008140	lsm4	100	87.582	Gasterosteus_aculeatus
ENSSPAG00000011615	lsm4	58	100.000	ENSGAGG00000017812	LSM4	72	97.980	Gopherus_agassizii
ENSSPAG00000011615	lsm4	58	98.864	ENSGGOG00000012914	-	99	73.510	Gorilla_gorilla
ENSSPAG00000011615	lsm4	100	93.377	ENSHBUG00000008858	lsm4	80	93.377	Haplochromis_burtoni
ENSSPAG00000011615	lsm4	97	74.324	ENSHGLG00000006568	LSM4	99	73.649	Heterocephalus_glaber_female
ENSSPAG00000011615	lsm4	61	98.913	ENSHGLG00100007894	LSM4	99	98.913	Heterocephalus_glaber_male
ENSSPAG00000011615	lsm4	100	90.728	ENSHCOG00000008819	lsm4	100	90.728	Hippocampus_comes
ENSSPAG00000011615	lsm4	100	85.526	ENSIPUG00000005368	Lsm4	100	84.868	Ictalurus_punctatus
ENSSPAG00000011615	lsm4	58	98.864	ENSSTOG00000016494	LSM4	99	73.510	Ictidomys_tridecemlineatus
ENSSPAG00000011615	lsm4	58	96.591	ENSJJAG00000017420	Lsm4	71	94.949	Jaculus_jaculus
ENSSPAG00000011615	lsm4	100	87.417	ENSKMAG00000005073	lsm4	100	90.066	Kryptolebias_marmoratus
ENSSPAG00000011615	lsm4	100	96.689	ENSLBEG00000027930	lsm4	100	96.689	Labrus_bergylta
ENSSPAG00000011615	lsm4	58	100.000	ENSLACG00000015861	LSM4	71	97.980	Latimeria_chalumnae
ENSSPAG00000011615	lsm4	84	91.406	ENSLOCG00000002025	lsm4	100	82.895	Lepisosteus_oculatus
ENSSPAG00000011615	lsm4	58	97.701	ENSLAFG00000017459	LSM4	71	95.918	Loxodonta_africana
ENSSPAG00000011615	lsm4	58	98.864	ENSMFAG00000031194	LSM4	99	73.510	Macaca_fascicularis
ENSSPAG00000011615	lsm4	58	98.864	ENSMMUG00000004405	LSM4	99	73.510	Macaca_mulatta
ENSSPAG00000011615	lsm4	58	98.864	ENSMNEG00000042899	LSM4	99	73.510	Macaca_nemestrina
ENSSPAG00000011615	lsm4	72	94.495	ENSMLEG00000027948	LSM4	99	73.510	Mandrillus_leucophaeus
ENSSPAG00000011615	lsm4	100	91.391	ENSMAMG00000006190	lsm4	100	91.391	Mastacembelus_armatus
ENSSPAG00000011615	lsm4	100	93.377	ENSMZEG00005016420	lsm4	100	93.377	Maylandia_zebra
ENSSPAG00000011615	lsm4	87	77.612	ENSMGAG00000004976	LSM4	71	97.959	Meleagris_gallopavo
ENSSPAG00000011615	lsm4	66	95.960	ENSMICG00000000222	LSM4	99	72.848	Microcebus_murinus
ENSSPAG00000011615	lsm4	58	95.455	ENSMOCG00000020861	Lsm4	71	93.939	Microtus_ochrogaster
ENSSPAG00000011615	lsm4	100	90.728	ENSMALG00000018159	lsm4	100	90.728	Monopterus_albus
ENSSPAG00000011615	lsm4	58	95.455	MGP_CAROLIEiJ_G0031158	Lsm4	71	93.939	Mus_caroli
ENSSPAG00000011615	lsm4	58	95.455	ENSMUSG00000031848	Lsm4	96	87.879	Mus_musculus
ENSSPAG00000011615	lsm4	58	95.455	MGP_PahariEiJ_G0021623	Lsm4	71	93.939	Mus_pahari
ENSSPAG00000011615	lsm4	58	95.455	MGP_SPRETEiJ_G0032276	Lsm4	71	93.939	Mus_spretus
ENSSPAG00000011615	lsm4	58	98.864	ENSMPUG00000015589	LSM4	99	73.510	Mustela_putorius_furo
ENSSPAG00000011615	lsm4	58	98.851	ENSMLUG00000004010	LSM4	98	73.333	Myotis_lucifugus
ENSSPAG00000011615	lsm4	58	95.455	ENSNGAG00000008644	Lsm4	98	70.345	Nannospalax_galili
ENSSPAG00000011615	lsm4	72	98.148	ENSNBRG00000022150	lsm4	67	98.148	Neolamprologus_brichardi
ENSSPAG00000011615	lsm4	87	69.466	ENSOPRG00000005575	LSM4	98	70.992	Ochotona_princeps
ENSSPAG00000011615	lsm4	58	98.864	ENSODEG00000020549	-	71	96.970	Octodon_degus
ENSSPAG00000011615	lsm4	58	88.636	ENSODEG00000004519	-	72	86.869	Octodon_degus
ENSSPAG00000011615	lsm4	97	59.459	ENSODEG00000011712	-	70	60.215	Octodon_degus
ENSSPAG00000011615	lsm4	100	94.040	ENSONIG00000012724	lsm4	100	94.040	Oreochromis_niloticus
ENSSPAG00000011615	lsm4	58	94.505	ENSOANG00000007434	LSM4	88	93.137	Ornithorhynchus_anatinus
ENSSPAG00000011615	lsm4	100	90.066	ENSORLG00000008391	lsm4	100	90.066	Oryzias_latipes
ENSSPAG00000011615	lsm4	100	90.728	ENSORLG00020014829	lsm4	100	90.066	Oryzias_latipes_hni
ENSSPAG00000011615	lsm4	100	90.066	ENSORLG00015010205	lsm4	100	89.404	Oryzias_latipes_hsok
ENSSPAG00000011615	lsm4	100	88.742	ENSOMEG00000003606	lsm4	100	88.079	Oryzias_melastigma
ENSSPAG00000011615	lsm4	65	95.918	ENSOGAG00000027992	LSM4	67	95.918	Otolemur_garnettii
ENSSPAG00000011615	lsm4	87	70.229	ENSOARG00000012553	LSM4	96	72.059	Ovis_aries
ENSSPAG00000011615	lsm4	58	98.864	ENSPPAG00000044045	-	99	73.510	Pan_paniscus
ENSSPAG00000011615	lsm4	58	98.864	ENSPPRG00000018264	LSM4	99	73.510	Panthera_pardus
ENSSPAG00000011615	lsm4	58	98.851	ENSPTIG00000006306	LSM4	99	73.333	Panthera_tigris_altaica
ENSSPAG00000011615	lsm4	72	94.545	ENSPTRG00000031470	LSM4	99	73.510	Pan_troglodytes
ENSSPAG00000011615	lsm4	72	94.495	ENSPANG00000014399	LSM4	99	73.510	Papio_anubis
ENSSPAG00000011615	lsm4	100	84.868	ENSPKIG00000006154	lsm4	100	84.868	Paramormyrops_kingsleyae
ENSSPAG00000011615	lsm4	58	100.000	ENSPSIG00000012358	LSM4	72	97.959	Pelodiscus_sinensis
ENSSPAG00000011615	lsm4	58	95.455	ENSPEMG00000001358	Lsm4	71	93.939	Peromyscus_maniculatus_bairdii
ENSSPAG00000011615	lsm4	100	88.079	ENSPFOG00000000570	lsm4	76	88.079	Poecilia_formosa
ENSSPAG00000011615	lsm4	100	88.079	ENSPLAG00000016267	lsm4	100	88.079	Poecilia_latipinna
ENSSPAG00000011615	lsm4	100	88.079	ENSPMEG00000016378	lsm4	100	88.079	Poecilia_mexicana
ENSSPAG00000011615	lsm4	100	88.742	ENSPREG00000011290	lsm4	76	88.742	Poecilia_reticulata
ENSSPAG00000011615	lsm4	58	98.864	ENSPPYG00000009736	LSM4	99	73.510	Pongo_abelii
ENSSPAG00000011615	lsm4	66	95.960	ENSPCOG00000019837	LSM4	99	72.848	Propithecus_coquereli
ENSSPAG00000011615	lsm4	58	98.864	ENSPVAG00000015383	LSM4	99	73.510	Pteropus_vampyrus
ENSSPAG00000011615	lsm4	100	93.377	ENSPNYG00000016794	lsm4	100	93.377	Pundamilia_nyererei
ENSSPAG00000011615	lsm4	95	87.413	ENSPNAG00000016598	lsm4	99	87.413	Pygocentrus_nattereri
ENSSPAG00000011615	lsm4	58	95.455	ENSRNOG00000019572	Lsm4	71	93.939	Rattus_norvegicus
ENSSPAG00000011615	lsm4	58	98.864	ENSRBIG00000024717	LSM4	99	73.510	Rhinopithecus_bieti
ENSSPAG00000011615	lsm4	58	98.864	ENSRROG00000045706	LSM4	99	73.510	Rhinopithecus_roxellana
ENSSPAG00000011615	lsm4	55	40.860	YER112W	LSM4	51	41.053	Saccharomyces_cerevisiae
ENSSPAG00000011615	lsm4	58	100.000	ENSSHAG00000011559	LSM4	71	97.980	Sarcophilus_harrisii
ENSSPAG00000011615	lsm4	100	84.868	ENSSFOG00015021067	lsm4	100	84.868	Scleropages_formosus
ENSSPAG00000011615	lsm4	100	86.755	ENSSMAG00000021020	lsm4	100	89.474	Scophthalmus_maximus
ENSSPAG00000011615	lsm4	100	88.623	ENSSDUG00000009588	lsm4	100	88.623	Seriola_dumerili
ENSSPAG00000011615	lsm4	100	88.095	ENSSLDG00000006827	lsm4	100	88.095	Seriola_lalandi_dorsalis
ENSSPAG00000011615	lsm4	58	100.000	ENSSPUG00000010166	LSM4	63	97.959	Sphenodon_punctatus
ENSSPAG00000011615	lsm4	58	98.864	ENSSSCG00000034314	LSM4	99	73.510	Sus_scrofa
ENSSPAG00000011615	lsm4	100	89.404	ENSTRUG00000021737	lsm4	100	89.404	Takifugu_rubripes
ENSSPAG00000011615	lsm4	100	84.211	ENSTNIG00000010191	lsm4	100	84.211	Tetraodon_nigroviridis
ENSSPAG00000011615	lsm4	72	94.545	ENSUAMG00000000665	LSM4	91	94.545	Ursus_americanus
ENSSPAG00000011615	lsm4	58	98.864	ENSUMAG00000009013	LSM4	99	73.510	Ursus_maritimus
ENSSPAG00000011615	lsm4	58	98.851	ENSVVUG00000008136	LSM4	70	73.333	Vulpes_vulpes
ENSSPAG00000011615	lsm4	65	96.939	ENSXETG00000024933	lsm4	71	96.939	Xenopus_tropicalis
ENSSPAG00000011615	lsm4	100	87.417	ENSXMAG00000026672	lsm4	76	87.417	Xiphophorus_maculatus