EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSPAG00000015633 (Gene tree)
Gene ID: 103366482
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Stegastes_partitus
Status: putative
Strand: Plus strand
Length: 16214 bases
Position: chrKK581020.1:220611-236824
Accession: 103366482
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPAP00000020724	EST1	PF10374.9	6.6e-15	1	1
ENSSPAP00000020724	EST1_DNA_bind	PF10373.9	2.7e-57	1	1
ENSSPAP00000020724	PIN_4	PF13638.6	1.2e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPAT00000021040	-	7171	XM_008294225	ENSSPAP00000020724	1647 (aa)	XP_008292447	UPI00049634DF

Gene Model

Click here to download ENSSPAG00000015633's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPAG00000015633's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPAG00000015633	smg6	91	49.104	ENSG00000070366	SMG6	100	58.059	Homo_sapiens
ENSSPAG00000015633	smg6	100	91.631	ENSAPOG00000019448	smg6	100	91.692	Acanthochromis_polyacanthus
ENSSPAG00000015633	smg6	74	54.758	ENSAMEG00000007632	SMG6	72	59.016	Ailuropoda_melanoleuca
ENSSPAG00000015633	smg6	93	80.672	ENSACIG00000012997	smg6	100	80.090	Amphilophus_citrinellus
ENSSPAG00000015633	smg6	100	92.359	ENSAOCG00000002630	smg6	100	92.480	Amphiprion_ocellaris
ENSSPAG00000015633	smg6	100	92.298	ENSAPEG00000019101	smg6	100	92.420	Amphiprion_percula
ENSSPAG00000015633	smg6	100	79.356	ENSATEG00000006483	smg6	100	79.356	Anabas_testudineus
ENSSPAG00000015633	smg6	69	46.502	ENSACAG00000011783	SMG6	72	52.260	Anolis_carolinensis
ENSSPAG00000015633	smg6	74	54.609	ENSANAG00000035760	SMG6	71	59.174	Aotus_nancymaae
ENSSPAG00000015633	smg6	100	80.502	ENSACLG00000005288	smg6	100	81.161	Astatotilapia_calliptera
ENSSPAG00000015633	smg6	81	70.000	ENSAMXG00000017326	smg6	94	68.885	Astyanax_mexicanus
ENSSPAG00000015633	smg6	75	54.405	ENSBTAG00000000267	SMG6	85	53.757	Bos_taurus
ENSSPAG00000015633	smg6	74	54.867	ENSCJAG00000001820	SMG6	71	59.266	Callithrix_jacchus
ENSSPAG00000015633	smg6	74	54.945	ENSCAFG00000019260	SMG6	83	54.631	Canis_familiaris
ENSSPAG00000015633	smg6	74	54.945	ENSCAFG00020009770	SMG6	83	54.631	Canis_lupus_dingo
ENSSPAG00000015633	smg6	74	54.867	ENSCHIG00000021998	SMG6	83	54.445	Capra_hircus
ENSSPAG00000015633	smg6	74	54.553	ENSTSYG00000003406	SMG6	100	57.509	Carlito_syrichta
ENSSPAG00000015633	smg6	67	53.409	ENSCAPG00000016197	SMG6	67	52.023	Cavia_aperea
ENSSPAG00000015633	smg6	74	54.351	ENSCPOG00000014878	SMG6	92	57.205	Cavia_porcellus
ENSSPAG00000015633	smg6	75	54.096	ENSCCAG00000035801	SMG6	71	59.083	Cebus_capucinus
ENSSPAG00000015633	smg6	74	54.867	ENSCATG00000031956	SMG6	71	59.174	Cercocebus_atys
ENSSPAG00000015633	smg6	74	54.206	ENSCLAG00000006748	SMG6	91	56.579	Chinchilla_lanigera
ENSSPAG00000015633	smg6	74	55.024	ENSCSAG00000013800	SMG6	71	59.450	Chlorocebus_sabaeus
ENSSPAG00000015633	smg6	75	54.914	ENSCPBG00000020369	SMG6	83	54.602	Chrysemys_picta_bellii
ENSSPAG00000015633	smg6	74	54.631	ENSCANG00000031764	SMG6	100	58.425	Colobus_angolensis_palliatus
ENSSPAG00000015633	smg6	100	71.497	ENSCSEG00000012757	smg6	100	71.617	Cynoglossus_semilaevis
ENSSPAG00000015633	smg6	100	71.721	ENSCVAG00000012789	smg6	100	71.119	Cyprinodon_variegatus
ENSSPAG00000015633	smg6	100	58.353	ENSDARG00000100481	smg6	100	56.963	Danio_rerio
ENSSPAG00000015633	smg6	74	54.595	ENSDNOG00000048283	SMG6	71	58.532	Dasypus_novemcinctus
ENSSPAG00000015633	smg6	74	51.288	ENSDORG00000016614	Smg6	92	57.018	Dipodomys_ordii
ENSSPAG00000015633	smg6	67	90.000	ENSETEG00000016790	SMG6	71	90.000	Echinops_telfairi
ENSSPAG00000015633	smg6	59	47.507	ENSEBUG00000005059	smg6	63	47.343	Eptatretus_burgeri
ENSSPAG00000015633	smg6	74	54.510	ENSEASG00005009318	SMG6	71	58.937	Equus_asinus_asinus
ENSSPAG00000015633	smg6	74	54.510	ENSECAG00000006519	SMG6	71	58.937	Equus_caballus
ENSSPAG00000015633	smg6	74	47.286	ENSEEUG00000003493	SMG6	72	50.138	Erinaceus_europaeus
ENSSPAG00000015633	smg6	100	65.761	ENSELUG00000005934	smg6	96	70.362	Esox_lucius
ENSSPAG00000015633	smg6	74	54.602	ENSFCAG00000028817	SMG6	83	54.082	Felis_catus
ENSSPAG00000015633	smg6	78	54.346	ENSFALG00000006538	SMG6	86	54.667	Ficedula_albicollis
ENSSPAG00000015633	smg6	74	54.382	ENSFDAG00000015106	SMG6	91	56.140	Fukomys_damarensis
ENSSPAG00000015633	smg6	100	72.453	ENSFHEG00000013282	smg6	100	71.867	Fundulus_heteroclitus
ENSSPAG00000015633	smg6	78	54.014	ENSGALG00000003108	SMG6	85	53.289	Gallus_gallus
ENSSPAG00000015633	smg6	100	72.700	ENSGAFG00000000379	smg6	100	72.262	Gambusia_affinis
ENSSPAG00000015633	smg6	85	78.529	ENSGACG00000020521	smg6	100	77.290	Gasterosteus_aculeatus
ENSSPAG00000015633	smg6	75	53.685	ENSGAGG00000025617	SMG6	85	53.079	Gopherus_agassizii
ENSSPAG00000015633	smg6	74	54.788	ENSGGOG00000017156	SMG6	71	59.266	Gorilla_gorilla
ENSSPAG00000015633	smg6	100	80.562	ENSHBUG00000021311	smg6	100	80.084	Haplochromis_burtoni
ENSSPAG00000015633	smg6	74	53.882	ENSHGLG00000012882	SMG6	91	56.579	Heterocephalus_glaber_female
ENSSPAG00000015633	smg6	74	53.882	ENSHGLG00100017815	SMG6	91	56.579	Heterocephalus_glaber_male
ENSSPAG00000015633	smg6	65	71.918	ENSHCOG00000008761	smg6	83	72.295	Hippocampus_comes
ENSSPAG00000015633	smg6	100	55.496	ENSIPUG00000012493	smg6	100	54.955	Ictalurus_punctatus
ENSSPAG00000015633	smg6	74	54.474	ENSSTOG00000028127	SMG6	92	57.018	Ictidomys_tridecemlineatus
ENSSPAG00000015633	smg6	55	50.738	ENSJJAG00000015367	Smg6	61	55.346	Jaculus_jaculus
ENSSPAG00000015633	smg6	100	75.404	ENSKMAG00000000279	smg6	100	75.404	Kryptolebias_marmoratus
ENSSPAG00000015633	smg6	100	78.661	ENSLBEG00000002184	smg6	100	78.422	Labrus_bergylta
ENSSPAG00000015633	smg6	74	54.254	ENSLAFG00000001261	SMG6	71	58.188	Loxodonta_africana
ENSSPAG00000015633	smg6	74	55.024	ENSMFAG00000003394	SMG6	71	59.450	Macaca_fascicularis
ENSSPAG00000015633	smg6	74	54.945	ENSMMUG00000023161	SMG6	71	58.991	Macaca_mulatta
ENSSPAG00000015633	smg6	74	52.913	ENSMNEG00000044592	SMG6	83	52.441	Macaca_nemestrina
ENSSPAG00000015633	smg6	70	59.965	ENSMLEG00000029353	SMG6	71	62.416	Mandrillus_leucophaeus
ENSSPAG00000015633	smg6	100	80.502	ENSMAMG00000020119	smg6	100	81.842	Mastacembelus_armatus
ENSSPAG00000015633	smg6	100	80.323	ENSMZEG00005024736	smg6	100	79.952	Maylandia_zebra
ENSSPAG00000015633	smg6	67	45.353	ENSMGAG00000005401	-	82	50.053	Meleagris_gallopavo
ENSSPAG00000015633	smg6	74	54.910	ENSMICG00000012913	SMG6	83	54.595	Microcebus_murinus
ENSSPAG00000015633	smg6	100	72.744	ENSMMOG00000010883	smg6	100	72.380	Mola_mola
ENSSPAG00000015633	smg6	74	55.599	ENSMODG00000010622	SMG6	72	59.103	Monodelphis_domestica
ENSSPAG00000015633	smg6	100	79.593	ENSMALG00000001106	smg6	100	79.473	Monopterus_albus
ENSSPAG00000015633	smg6	74	54.718	MGP_CAROLIEiJ_G0016729	Smg6	98	63.934	Mus_caroli
ENSSPAG00000015633	smg6	74	54.239	ENSMUSG00000038290	Smg6	96	64.507	Mus_musculus
ENSSPAG00000015633	smg6	74	53.931	MGP_PahariEiJ_G0017866	Smg6	96	64.225	Mus_pahari
ENSSPAG00000015633	smg6	74	54.160	MGP_SPRETEiJ_G0017572	Smg6	96	64.225	Mus_spretus
ENSSPAG00000015633	smg6	74	55.024	ENSMPUG00000013046	SMG6	72	59.103	Mustela_putorius_furo
ENSSPAG00000015633	smg6	74	55.189	ENSMLUG00000005739	SMG6	83	54.874	Myotis_lucifugus
ENSSPAG00000015633	smg6	74	54.610	ENSNGAG00000007287	Smg6	92	56.579	Nannospalax_galili
ENSSPAG00000015633	smg6	98	77.368	ENSNBRG00000009511	smg6	99	79.354	Neolamprologus_brichardi
ENSSPAG00000015633	smg6	74	54.788	ENSNLEG00000017171	SMG6	100	58.059	Nomascus_leucogenys
ENSSPAG00000015633	smg6	74	54.431	ENSMEUG00000015804	SMG6	85	53.622	Notamacropus_eugenii
ENSSPAG00000015633	smg6	51	62.827	ENSOPRG00000000579	SMG6	82	61.979	Ochotona_princeps
ENSSPAG00000015633	smg6	74	48.442	ENSODEG00000008038	SMG6	81	54.386	Octodon_degus
ENSSPAG00000015633	smg6	100	80.921	ENSONIG00000005594	smg6	100	83.191	Oreochromis_niloticus
ENSSPAG00000015633	smg6	76	53.852	ENSOCUG00000013018	SMG6	87	53.206	Oryctolagus_cuniculus
ENSSPAG00000015633	smg6	100	71.139	ENSORLG00000003317	smg6	100	70.553	Oryzias_latipes
ENSSPAG00000015633	smg6	100	71.249	ENSORLG00020015343	smg6	100	71.112	Oryzias_latipes_hni
ENSSPAG00000015633	smg6	100	71.386	ENSORLG00015020454	smg6	100	71.189	Oryzias_latipes_hsok
ENSSPAG00000015633	smg6	100	69.922	ENSOMEG00000010838	smg6	100	70.384	Oryzias_melastigma
ENSSPAG00000015633	smg6	74	55.186	ENSOGAG00000004483	SMG6	71	59.266	Otolemur_garnettii
ENSSPAG00000015633	smg6	74	54.945	ENSOARG00000015076	SMG6	85	54.524	Ovis_aries
ENSSPAG00000015633	smg6	91	48.592	ENSPPAG00000043296	SMG6	71	59.083	Pan_paniscus
ENSSPAG00000015633	smg6	74	54.602	ENSPPRG00000014581	SMG6	83	54.082	Panthera_pardus
ENSSPAG00000015633	smg6	74	54.602	ENSPTIG00000008925	SMG6	100	58.242	Panthera_tigris_altaica
ENSSPAG00000015633	smg6	74	54.710	ENSPTRG00000008544	SMG6	100	58.059	Pan_troglodytes
ENSSPAG00000015633	smg6	74	54.945	ENSPANG00000024588	SMG6	71	59.358	Papio_anubis
ENSSPAG00000015633	smg6	67	52.369	ENSPSIG00000006660	SMG6	81	52.368	Pelodiscus_sinensis
ENSSPAG00000015633	smg6	95	81.608	ENSPMGG00000000844	smg6	99	80.790	Periophthalmus_magnuspinnatus
ENSSPAG00000015633	smg6	74	54.964	ENSPEMG00000020707	Smg6	93	56.140	Peromyscus_maniculatus_bairdii
ENSSPAG00000015633	smg6	100	73.916	ENSPFOG00000012035	smg6	100	77.962	Poecilia_formosa
ENSSPAG00000015633	smg6	100	74.096	ENSPLAG00000017660	smg6	100	73.418	Poecilia_latipinna
ENSSPAG00000015633	smg6	100	74.036	ENSPMEG00000000258	smg6	100	73.418	Poecilia_mexicana
ENSSPAG00000015633	smg6	100	73.149	ENSPREG00000010066	smg6	100	72.530	Poecilia_reticulata
ENSSPAG00000015633	smg6	74	50.782	ENSPPYG00000007790	SMG6	83	50.548	Pongo_abelii
ENSSPAG00000015633	smg6	71	59.545	ENSPCAG00000000552	SMG6	83	51.681	Procavia_capensis
ENSSPAG00000015633	smg6	74	54.553	ENSPCOG00000020925	SMG6	71	58.899	Propithecus_coquereli
ENSSPAG00000015633	smg6	70	62.388	ENSPVAG00000002159	SMG6	67	62.131	Pteropus_vampyrus
ENSSPAG00000015633	smg6	93	77.849	ENSPNYG00000024151	smg6	99	79.024	Pundamilia_nyererei
ENSSPAG00000015633	smg6	100	53.750	ENSPNAG00000015480	smg6	100	53.123	Pygocentrus_nattereri
ENSSPAG00000015633	smg6	74	54.438	ENSRNOG00000003041	Smg6	97	64.208	Rattus_norvegicus
ENSSPAG00000015633	smg6	74	55.024	ENSRBIG00000024746	SMG6	71	59.358	Rhinopithecus_bieti
ENSSPAG00000015633	smg6	74	55.024	ENSRROG00000030423	SMG6	100	58.425	Rhinopithecus_roxellana
ENSSPAG00000015633	smg6	74	54.474	ENSSBOG00000022518	SMG6	71	57.064	Saimiri_boliviensis_boliviensis
ENSSPAG00000015633	smg6	74	55.145	ENSSHAG00000010045	SMG6	71	59.028	Sarcophilus_harrisii
ENSSPAG00000015633	smg6	100	50.632	ENSSFOG00015005436	smg6	100	51.803	Scleropages_formosus
ENSSPAG00000015633	smg6	100	78.469	ENSSMAG00000019777	smg6	100	78.695	Scophthalmus_maximus
ENSSPAG00000015633	smg6	100	83.861	ENSSDUG00000016412	smg6	100	83.742	Seriola_dumerili
ENSSPAG00000015633	smg6	91	84.352	ENSSLDG00000020747	smg6	98	84.221	Seriola_lalandi_dorsalis
ENSSPAG00000015633	smg6	75	54.286	ENSSPUG00000007152	SMG6	84	53.751	Sphenodon_punctatus
ENSSPAG00000015633	smg6	74	54.917	ENSSSCG00000017826	SMG6	72	59.358	Sus_scrofa
ENSSPAG00000015633	smg6	78	53.598	ENSTGUG00000005836	SMG6	85	53.995	Taeniopygia_guttata
ENSSPAG00000015633	smg6	94	81.250	ENSTRUG00000000358	smg6	99	81.250	Takifugu_rubripes
ENSSPAG00000015633	smg6	95	77.636	ENSTNIG00000016164	smg6	100	79.048	Tetraodon_nigroviridis
ENSSPAG00000015633	smg6	66	56.509	ENSTTRG00000001175	SMG6	74	56.509	Tursiops_truncatus
ENSSPAG00000015633	smg6	74	55.148	ENSUAMG00000025152	SMG6	73	59.070	Ursus_americanus
ENSSPAG00000015633	smg6	74	54.965	ENSUMAG00000009306	SMG6	73	59.012	Ursus_maritimus
ENSSPAG00000015633	smg6	60	95.833	ENSVPAG00000000225	SMG6	58	95.833	Vicugna_pacos
ENSSPAG00000015633	smg6	74	55.430	ENSVVUG00000021727	SMG6	84	54.867	Vulpes_vulpes
ENSSPAG00000015633	smg6	66	54.201	ENSXETG00000023799	SMG6	73	53.769	Xenopus_tropicalis
ENSSPAG00000015633	smg6	98	71.666	ENSXCOG00000009867	smg6	99	70.787	Xiphophorus_couchianus
ENSSPAG00000015633	smg6	100	73.526	ENSXMAG00000010321	smg6	100	72.908	Xiphophorus_maculatus